From owner-freebsd-pkg-fallout@freebsd.org Thu Jan 7 10:31:49 2021 Return-Path: Delivered-To: freebsd-pkg-fallout@mailman.nyi.freebsd.org Received: from mx1.freebsd.org (mx1.freebsd.org [IPv6:2610:1c1:1:606c::19:1]) by mailman.nyi.freebsd.org (Postfix) with ESMTP id 4714E4CBEE5 for ; Thu, 7 Jan 2021 10:31:49 +0000 (UTC) (envelope-from pkg-fallout@FreeBSD.org) Received: from mailman.nyi.freebsd.org (unknown [127.0.1.3]) by mx1.freebsd.org (Postfix) with ESMTP id 4DBMwj1XHsz4rn1 for ; Thu, 7 Jan 2021 10:31:49 +0000 (UTC) (envelope-from pkg-fallout@FreeBSD.org) Received: by mailman.nyi.freebsd.org (Postfix) id 348AB4CBCE7; Thu, 7 Jan 2021 10:31:49 +0000 (UTC) Delivered-To: pkg-fallout@mailman.nyi.freebsd.org Received: from mx1.freebsd.org (mx1.freebsd.org [IPv6:2610:1c1:1:606c::19:1]) by mailman.nyi.freebsd.org (Postfix) with ESMTP id 345024CBFAA for ; Thu, 7 Jan 2021 10:31:49 +0000 (UTC) (envelope-from pkg-fallout@FreeBSD.org) Received: from mxrelay.nyi.freebsd.org (mxrelay.nyi.freebsd.org [IPv6:2610:1c1:1:606c::19:3]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) key-exchange X25519 server-signature RSA-PSS (4096 bits) server-digest SHA256 client-signature RSA-PSS (4096 bits) client-digest SHA256) (Client CN "mxrelay.nyi.freebsd.org", Issuer "Let's Encrypt Authority X3" (verified OK)) by mx1.freebsd.org (Postfix) with ESMTPS id 4DBMwj0zgnz4rhK; Thu, 7 Jan 2021 10:31:49 +0000 (UTC) (envelope-from pkg-fallout@FreeBSD.org) Received: from package19.nyi.freebsd.org (package19.nyi.freebsd.org [IPv6:2610:1c1:1:6082::16:f5]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) key-exchange X25519 server-signature RSA-PSS (4096 bits) server-digest SHA256) (Client did not present a certificate) by mxrelay.nyi.freebsd.org (Postfix) with ESMTPS id 146E17660; Thu, 7 Jan 2021 10:31:49 +0000 (UTC) (envelope-from pkg-fallout@FreeBSD.org) Received: from package19.nyi.freebsd.org (localhost [127.0.0.1]) by package19.nyi.freebsd.org (8.16.1/8.16.1) with ESMTP id 107AVnUW015426; Thu, 7 Jan 2021 10:31:49 GMT (envelope-from pkg-fallout@FreeBSD.org) Received: (from root@localhost) by package19.nyi.freebsd.org (8.16.1/8.16.1/Submit) id 107AVmmF015241; Thu, 7 Jan 2021 10:31:48 GMT (envelope-from pkg-fallout@FreeBSD.org) Date: Thu, 7 Jan 2021 10:31:48 GMT From: pkg-fallout@FreeBSD.org Message-Id: <202101071031.107AVmmF015241@package19.nyi.freebsd.org> To: ssb22@cam.ac.uk Subject: [exp - 121amd64-default-build-as-user][biology/pooler] Failed for pooler-1.75 in build Cc: pkg-fallout@FreeBSD.org X-BeenThere: freebsd-pkg-fallout@freebsd.org X-Mailman-Version: 2.1.34 Precedence: list List-Id: Fallout logs from package building List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , X-List-Received-Date: Thu, 07 Jan 2021 10:31:49 -0000 You are receiving this mail as a port that you maintain is failing to build on the FreeBSD package build server. Please investigate the failure and submit a PR to fix build. Maintainer: ssb22@cam.ac.uk Last committer: jwb@FreeBSD.org Ident: $FreeBSD: head/biology/pooler/Makefile 555418 2020-11-15 18:50:17Z jwb $ Log URL: http://package19.nyi.freebsd.org/data/121amd64-default-build-as-user/560357/logs/pooler-1.75.log Build URL: http://package19.nyi.freebsd.org/build.html?mastername=121amd64-default-build-as-user&build=560357 Log: =>> Building biology/pooler build started at Thu Jan 7 10:31:37 UTC 2021 port directory: /usr/ports/biology/pooler package name: pooler-1.75 building for: FreeBSD 121amd64-default-build-as-user-job-02 12.1-RELEASE-p12 FreeBSD 12.1-RELEASE-p12 amd64 maintained by: ssb22@cam.ac.uk Makefile ident: $FreeBSD: head/biology/pooler/Makefile 555418 2020-11-15 18:50:17Z jwb $ Poudriere version: 3.2.8-8-gaf08dbda Host OSVERSION: 1300121 Jail OSVERSION: 1201000 Job Id: 02 ---Begin Environment--- SHELL=/bin/csh OSVERSION=1201000 UNAME_v=FreeBSD 12.1-RELEASE-p12 UNAME_r=12.1-RELEASE-p12 BLOCKSIZE=K MAIL=/var/mail/root STATUS=1 HOME=/root PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin LOCALBASE=/usr/local USER=root LIBEXECPREFIX=/usr/local/libexec/poudriere POUDRIERE_VERSION=3.2.8-8-gaf08dbda MASTERMNT=/poudriere/data/.m/121amd64-default-build-as-user/ref POUDRIERE_BUILD_TYPE=bulk PACKAGE_BUILDING=yes SAVED_TERM= GID=0 UID=0 PWD=/poudriere/data/.m/121amd64-default-build-as-user/ref/.p/pool P_PORTS_FEATURES=FLAVORS SELECTED_OPTIONS MASTERNAME=121amd64-default-build-as-user SCRIPTPREFIX=/usr/local/share/poudriere OLDPWD=/poudriere/data/.m/121amd64-default-build-as-user/ref/.p SCRIPTPATH=/usr/local/share/poudriere/bulk.sh POUDRIEREPATH=/usr/local/bin/poudriere ---End Environment--- ---Begin Poudriere Port Flags/Env--- PORT_FLAGS= PKGENV= FLAVOR= DEPENDS_ARGS= MAKE_ARGS= ---End Poudriere Port Flags/Env--- ---Begin OPTIONS List--- ---End OPTIONS List--- --MAINTAINER-- ssb22@cam.ac.uk --End MAINTAINER-- --CONFIGURE_ARGS-- --End CONFIGURE_ARGS-- --CONFIGURE_ENV-- XDG_DATA_HOME=/wrkdirs/usr/ports/biology/pooler/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/pooler/work HOME=/wrkdirs/usr/ports/biology/pooler/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/pooler/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin SHELL=/bin/sh CONFIG_SHELL=/bin/sh --End CONFIGURE_ENV-- --MAKE_ENV-- XDG_DATA_HOME=/wrkdirs/usr/ports/biology/pooler/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/pooler/work HOME=/wrkdirs/usr/ports/biology/pooler/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/pooler/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin NO_PIE=yes MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES ADDR2LINE="/usr/local/bin/addr2line" AR="/usr/local/bin/ar" AS="/usr/local/bin/as" CPPFILT="/usr/local/bin/c++filt" GPROF="/usr/local/bin/gprof" LD="/usr/local/bin/ld" NM="/usr/local/bin/nm" OBJCOPY="/usr/local/bin/objcopy" OBJDUMP="/usr/local/bin/objdump" RANLIB="/usr/local/bin/ranlib" READELF="/usr/local/bin/readelf" SIZE="/usr/local/bin/size" STRINGS="/usr/local/bin/strings" PREFIX=/usr/local LOCALBASE=/usr/local CC="gcc9" CFLAGS="-O2 -pipe -fopenmp -fstack-protector-strong -Wl,-rpath=/usr/local/lib/gcc9 -fno-strict-aliasing " CPP="cpp9" CPPFLAGS="" LDFLAGS=" -fstack-protector-strong -Wl,-rpath=/usr/local/lib/gcc9 -L/u sr/local/lib/gcc9 " LIBS="" CXX="g++9" CXXFLAGS="-O2 -pipe -fopenmp -fstack-protector-strong -Wl,-rpath=/usr/local/lib/gcc9 -Wl,-rpath=/usr/local/lib/gcc9 " MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" --End MAKE_ENV-- --PLIST_SUB-- OSREL=12.1 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib DOCSDIR="share/doc/pooler" EXAMPLESDIR="share/examples/pooler" DATADIR="share/pooler" WWWDIR="www/pooler" ETCDIR="etc/pooler" --End PLIST_SUB-- --SUB_LIST-- PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/pooler DOCSDIR=/usr/local/share/doc/pooler EXAMPLESDIR=/usr/local/share/examples/pooler WWWDIR=/usr/local/www/pooler ETCDIR=/usr/local/etc/pooler --End SUB_LIST-- ---Begin make.conf--- USE_PACKAGE_DEPENDS=yes BATCH=yes WRKDIRPREFIX=/wrkdirs PORTSDIR=/usr/ports PACKAGES=/packages DISTDIR=/distfiles FORCE_PACKAGE=yes PACKAGE_BUILDING=yes PACKAGE_BUILDING_FLAVORS=yes #### /usr/local/etc/poudriere.d/make.conf #### # Build ALLOW_MAKE_JOBS_PACKAGES with 2 jobs MAKE_JOBS_NUMBER=2 #### /usr/ports/Mk/Scripts/ports_env.sh #### _CCVERSION_921dbbb2=FreeBSD clang version 8.0.1 (tags/RELEASE_801/final 366581) (based on LLVM 8.0.1) Target: x86_64-unknown-freebsd12.1 Thread model: posix InstalledDir: /usr/bin _ALTCCVERSION_921dbbb2=none _CXXINTERNAL_acaad9ca=FreeBSD clang version 8.0.1 (tags/RELEASE_801/final 366581) (based on LLVM 8.0.1) Target: x86_64-unknown-freebsd12.1 Thread model: posix InstalledDir: /usr/bin "/usr/bin/ld" "--eh-frame-hdr" "-dynamic-linker" "/libexec/ld-elf.so.1" "--hash-style=both" "--enable-new-dtags" "-o" "a.out" "/usr/lib/crt1.o" "/usr/lib/crti.o" "/usr/lib/crtbegin.o" "-L/usr/lib" "/dev/null" "-lc++" "-lm" "-lgcc" "--as-needed" "-lgcc_s" "--no-as-needed" "-lc" "-lgcc" "--as-needed" "-lgcc_s" "--no-as-needed" "/usr/lib/crtend.o" "/usr/lib/crtn.o" CC_OUTPUT_921dbbb2_58173849=yes CC_OUTPUT_921dbbb2_9bdba57c=yes CC_OUTPUT_921dbbb2_6a4fe7f5=yes CC_OUTPUT_921dbbb2_6bcac02b=yes CC_OUTPUT_921dbbb2_67d20829=yes CC_OUTPUT_921dbbb2_bfa62e83=yes CC_OUTPUT_921dbbb2_f0b4d593=yes CC_OUTPUT_921dbbb2_308abb44=yes CC_OUTPUT_921dbbb2_f00456e5=yes CC_OUTPUT_921dbbb2_65ad290d=yes CC_OUTPUT_921dbbb2_f2776b26=yes CC_OUTPUT_921dbbb2_b2657cc3=yes CC_OUTPUT_921dbbb2_380987f7=yes CC_OUTPUT_921dbbb2_160933ec=yes CC_OUTPUT_921dbbb2_fb62803b=yes _OBJC_CCVERSION_921dbbb2=FreeBSD clang version 8.0.1 (tags/RELEASE_801/final 366581) (based on LLVM 8.0.1) Target: x86_64-unknown-freebsd12.1 Thread model: posix InstalledDir: /usr/bin _OBJC_ALTCCVERSION_921dbbb2=none ARCH=amd64 OPSYS=FreeBSD _OSRELEASE=12.1-RELEASE-p12 OSREL=12.1 OSVERSION=1201000 PYTHONBASE=/usr/local HAVE_COMPAT_IA32_KERN=YES CONFIGURE_MAX_CMD_LEN=524288 HAVE_PORTS_ENV=1 #### Misc Poudriere #### ---End make.conf--- --Resource limits-- cpu time (seconds, -t) unlimited file size (512-blocks, -f) unlimited data seg size (kbytes, -d) 33554432 stack size (kbytes, -s) 524288 core file size (512-blocks, -c) unlimited max memory size (kbytes, -m) unlimited locked memory (kbytes, -l) unlimited max user processes (-u) 89999 open files (-n) 1024 virtual mem size (kbytes, -v) unlimited swap limit (kbytes, -w) unlimited socket buffer size (bytes, -b) unlimited pseudo-terminals (-p) unlimited kqueues (-k) unlimited umtx shared locks (-o) unlimited --End resource limits-- =================================================== ===> License APACHE20 accepted by the user =========================================================================== =================================================== ===> pooler-1.75 depends on file: /usr/local/sbin/pkg - not found ===> Installing existing package /packages/All/pkg-1.16.1.txz [121amd64-default-build-as-user-job-02] Installing pkg-1.16.1... [121amd64-default-build-as-user-job-02] Extracting pkg-1.16.1: .......... done ===> pooler-1.75 depends on file: /usr/local/sbin/pkg - found ===> Returning to build of pooler-1.75 =========================================================================== =================================================== =========================================================================== =================================================== ===> License APACHE20 accepted by the user ===> Fetching all distfiles required by pooler-1.75 for building =========================================================================== =================================================== ===> License APACHE20 accepted by the user ===> Fetching all distfiles required by pooler-1.75 for building => SHA256 Checksum OK for ssb22-PrimerPooler-v1.75_GH0.tar.gz. =========================================================================== =================================================== =========================================================================== =================================================== ===> License APACHE20 accepted by the user ===> Fetching all distfiles required by pooler-1.75 for building ===> Extracting for pooler-1.75 => SHA256 Checksum OK for ssb22-PrimerPooler-v1.75_GH0.tar.gz. =========================================================================== =================================================== =========================================================================== =================================================== ===> Patching for pooler-1.75 =========================================================================== =================================================== ===> pooler-1.75 depends on executable: gcc9 - not found ===> Installing existing package /packages/All/gcc9-9.3.0_1.txz [121amd64-default-build-as-user-job-02] Installing gcc9-9.3.0_1... [121amd64-default-build-as-user-job-02] `-- Installing binutils-2.33.1_4,1... [121amd64-default-build-as-user-job-02] | `-- Installing gettext-runtime-0.21... [121amd64-default-build-as-user-job-02] | | `-- Installing indexinfo-0.3.1... [121amd64-default-build-as-user-job-02] | | `-- Extracting indexinfo-0.3.1: .... done [121amd64-default-build-as-user-job-02] | `-- Extracting gettext-runtime-0.21: .......... done [121amd64-default-build-as-user-job-02] `-- Extracting binutils-2.33.1_4,1: .......... done [121amd64-default-build-as-user-job-02] `-- Installing gmp-6.2.1... [121amd64-default-build-as-user-job-02] `-- Extracting gmp-6.2.1: .......... done [121amd64-default-build-as-user-job-02] `-- Installing mpc-1.1.0_2... [121amd64-default-build-as-user-job-02] | `-- Installing mpfr-4.1.0... [121amd64-default-build-as-user-job-02] | `-- Extracting mpfr-4.1.0: .......... done [121amd64-default-build-as-user-job-02] `-- Extracting mpc-1.1.0_2: ......... done [121amd64-default-build-as-user-job-02] Extracting gcc9-9.3.0_1: .......... done ===== Message from gcc9-9.3.0_1: -- To ensure binaries built with this toolchain find appropriate versions of the necessary run-time libraries, you may want to link using -Wl,-rpath=/usr/local/lib/gcc9 For ports leveraging USE_GCC, USES=compiler, or USES=fortran this happens transparently. ===> pooler-1.75 depends on executable: gcc9 - found ===> Returning to build of pooler-1.75 ===> pooler-1.75 depends on file: /usr/local/bin/as - found =========================================================================== =================================================== =========================================================================== =================================================== ===> Configuring for pooler-1.75 =========================================================================== =================================================== ===> Building for pooler-1.75 --- 32.h --- --- 32-64.h --- --- 32.h --- chmod +w 128.h 32.h 32-64.h 2>/dev/null || true --- 32-64.h --- chmod +w 128.h 32.h 32-64.h 2>/dev/null || true --- 32.h --- sed -e s/64/128/g < 64.h > 128.h --- 32-64.h --- sed -e s/64/128/g < 64.h > 128.h --- 32.h --- sed -e s/64/32/g < 64.h > 32.h sed -e s/64/32/g -e s/128/64/g < 64-128.h > 32-64.h --- 32-64.h --- sed -e s/64/32/g < 64.h > 32.h --- 32.h --- chmod -w 128.h 32.h 32-64.h --- 32-64.h --- sed -e s/64/32/g -e s/128/64/g < 64-128.h > 32-64.h sh: cannot create 32-64.h: Permission denied *** [32-64.h] Error code 2 make[1]: stopped in /wrkdirs/usr/ports/biology/pooler/work/PrimerPooler-1.75/pooler 1 error make[1]: stopped in /wrkdirs/usr/ports/biology/pooler/work/PrimerPooler-1.75/pooler ===> Compilation failed unexpectedly. Try to set MAKE_JOBS_UNSAFE=yes and rebuild before reporting the failure to the maintainer. *** Error code 1 Stop. make: stopped in /usr/ports/biology/pooler