Date: Mon, 4 Dec 2006 17:44:45 +0800 (CST) From: chinsan <chinsan@FreeBSD.org> To: FreeBSD-gnats-submit@FreeBSD.org Cc: razi@genet.sickkids.on.ca Subject: ports/106300: [PATCH] biology/p5-Bio-Das: update to 1.03 Message-ID: <20061204094445.DD3EB11454@chinsan.twbbs.org> Resent-Message-ID: <200612040950.kB49o3cD033367@freefall.freebsd.org>
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>Number: 106300 >Category: ports >Synopsis: [PATCH] biology/p5-Bio-Das: update to 1.03 >Confidential: no >Severity: non-critical >Priority: low >Responsible: freebsd-ports-bugs >State: open >Quarter: >Keywords: >Date-Required: >Class: update >Submitter-Id: current-users >Arrival-Date: Mon Dec 04 09:50:03 GMT 2006 >Closed-Date: >Last-Modified: >Originator: chinsan >Release: FreeBSD 6.2-PRERELEASE i386 >Organization: Taiwan >Environment: System: FreeBSD chinsan.twbbs.org 6.2-PRERELEASE FreeBSD 6.2-PRERELEASE #3: Mon Dec 4 02:04:40 CST >Description: - Update to 1.03 Port maintainer (razi@genet.sickkids.on.ca) is cc'd. Generated with FreeBSD Port Tools 0.77 >How-To-Repeat: >Fix: --- p5-Bio-Das-1.03.patch begins here --- diff -ruN --exclude=CVS /usr/ports/biology/p5-Bio-Das/Makefile /usr/home/chinsan/project/p5-Bio-Das/Makefile --- /usr/ports/biology/p5-Bio-Das/Makefile Sun Dec 3 22:57:37 2006 +++ /usr/home/chinsan/project/p5-Bio-Das/Makefile Mon Dec 4 13:25:49 2006 @@ -6,7 +6,7 @@ # PORTNAME= Bio-Das -PORTVERSION= 1.02 +PORTVERSION= 1.03 CATEGORIES= biology MASTER_SITES= http://www.biodas.org/download/Bio::Das/ \ ${MASTER_SITE_PERL_CPAN} @@ -25,57 +25,22 @@ PERL_CONFIGURE= YES -MAN3= Bio::Das.3 \ - Bio::Das::AGPServer::Config.3 \ - Bio::Das::AGPServer::Daemon.3 \ - Bio::Das::AGPServer::Parser.3 \ - Bio::Das::AGPServer::SQLStorage.3 \ +MAN3= Bio::Das.3 Bio::Das::AGPServer::Config.3 Bio::Das::AGPServer::Daemon.3 \ + Bio::Das::AGPServer::Parser.3 Bio::Das::AGPServer::SQLStorage.3 \ Bio::Das::AGPServer::SQLStorage::CSV::DB.3 \ Bio::Das::AGPServer::SQLStorage::MySQL::DB.3 \ - Bio::Das::DSN.3 \ - Bio::Das::Feature.3 \ - Bio::Das::FeatureIterator.3 \ - Bio::Das::HTTP::Fetch.3 \ - Bio::Das::Map.3 \ - Bio::Das::ProServer::Config.3 \ - Bio::Das::ProServer::Daemon.3 \ - Bio::Das::ProServer::Loader::agp.3 \ - Bio::Das::ProServer::SourceAdaptor.3 \ - Bio::Das::ProServer::SourceAdaptor::Transport::dbi.3 \ - Bio::Das::ProServer::SourceAdaptor::Transport::file.3 \ - Bio::Das::ProServer::SourceAdaptor::Transport::generic.3 \ - Bio::Das::ProServer::SourceAdaptor::Transport::getz.3 \ - Bio::Das::ProServer::SourceAdaptor::Transport::getzc.3 \ - Bio::Das::ProServer::SourceAdaptor::Transport::oracle.3 \ - Bio::Das::ProServer::SourceAdaptor::agp.3 \ - Bio::Das::ProServer::SourceAdaptor::cosmic.3 \ - Bio::Das::ProServer::SourceAdaptor::gensat.3 \ - Bio::Das::ProServer::SourceAdaptor::haplotype.3 \ - Bio::Das::ProServer::SourceAdaptor::image.3 \ - Bio::Das::ProServer::SourceAdaptor::interpro.3 \ - Bio::Das::ProServer::SourceAdaptor::simple.3 \ - Bio::Das::ProServer::SourceAdaptor::snp.3 \ - Bio::Das::ProServer::SourceAdaptor::sts.3 \ - Bio::Das::ProServer::SourceAdaptor::swissprot.3 \ - Bio::Das::ProServer::SourceAdaptor::trace.3 \ - Bio::Das::Request.3 \ - Bio::Das::Request::Dnas.3 \ - Bio::Das::Request::Dsn.3 \ - Bio::Das::Request::Entry_points.3 \ - Bio::Das::Request::Feature2Segments.3 \ - Bio::Das::Request::Sequences.3 \ - Bio::Das::Request::Stylesheet.3 \ - Bio::Das::Request::Types.3 \ - Bio::Das::Segment.3 \ - Bio::Das::Stylesheet.3 \ - Bio::Das::Type.3 \ - Bio::Das::TypeHandler.3 \ - Bio::Das::Util.3 + Bio::Das::DSN.3 Bio::Das::Feature.3 Bio::Das::FeatureIterator.3 \ + Bio::Das::HTTP::Fetch.3 Bio::Das::Map.3 Bio::Das::Request.3 \ + Bio::Das::Request::Dnas.3 Bio::Das::Request::Dsn.3 \ + Bio::Das::Request::Entry_points.3 Bio::Das::Request::Feature2Segments.3 \ + Bio::Das::Request::Sequences.3 Bio::Das::Request::Stylesheet.3 \ + Bio::Das::Request::Types.3 Bio::Das::Segment.3 Bio::Das::Stylesheet.3 \ + Bio::Das::Type.3 Bio::Das::TypeHandler.3 Bio::Das::Util.3 .include <bsd.port.pre.mk> .if (${PERL_LEVEL} < 500601) -BROKEN= "Some dependencies doesn't work with Perl < 5.6.1" +BROKEN= Some dependencies requires at least 5.6.1 Please install lang/perl5.8 and try again .endif .include <bsd.port.post.mk> diff -ruN --exclude=CVS /usr/ports/biology/p5-Bio-Das/distinfo /usr/home/chinsan/project/p5-Bio-Das/distinfo --- /usr/ports/biology/p5-Bio-Das/distinfo Sun Jan 22 16:20:32 2006 +++ /usr/home/chinsan/project/p5-Bio-Das/distinfo Mon Dec 4 13:09:04 2006 @@ -1,3 +1,3 @@ -MD5 (Bio-Das-1.02.tar.gz) = 6b3706f1ca52da18bd7c6376cf89b244 -SHA256 (Bio-Das-1.02.tar.gz) = 3aad2bbd746d1ce3468f26521793c7a9bad417b9670e061a9ef355f10a506705 -SIZE (Bio-Das-1.02.tar.gz) = 127150 +MD5 (Bio-Das-1.03.tar.gz) = 9971a1ab003d66c8e055ee00b31fede8 +SHA256 (Bio-Das-1.03.tar.gz) = af77f83d294ab6c720af49dbac58655325e2a9be79149d5437d67c888d1042a9 +SIZE (Bio-Das-1.03.tar.gz) = 101698 diff -ruN --exclude=CVS /usr/ports/biology/p5-Bio-Das/pkg-plist /usr/home/chinsan/project/p5-Bio-Das/pkg-plist --- /usr/ports/biology/p5-Bio-Das/pkg-plist Fri Jan 6 06:31:12 2006 +++ /usr/home/chinsan/project/p5-Bio-Das/pkg-plist Mon Dec 4 16:24:00 2006 @@ -1,63 +1,35 @@ +%%SITE_PERL%%/%%PERL_ARCH%%/auto/Bio/Das/.packlist %%SITE_PERL%%/Bio/Das.pm -%%SITE_PERL%%/Bio/Das/AGPServer/Config.pm -%%SITE_PERL%%/Bio/Das/AGPServer/Daemon.pm -%%SITE_PERL%%/Bio/Das/AGPServer/Parser.pm -%%SITE_PERL%%/Bio/Das/AGPServer/Proxy.pm -%%SITE_PERL%%/Bio/Das/AGPServer/SQLStorage.pm -%%SITE_PERL%%/Bio/Das/AGPServer/SQLStorage/CSV/DB.pm -%%SITE_PERL%%/Bio/Das/AGPServer/SQLStorage/MySQL/DB.pm %%SITE_PERL%%/Bio/Das/DSN.pm -%%SITE_PERL%%/Bio/Das/Feature.pm -%%SITE_PERL%%/Bio/Das/FeatureIterator.pm -%%SITE_PERL%%/Bio/Das/HTTP/Fetch.pm -%%SITE_PERL%%/Bio/Das/Map.pm -%%SITE_PERL%%/Bio/Das/ProServer/Config.pm -%%SITE_PERL%%/Bio/Das/ProServer/Daemon.pm -%%SITE_PERL%%/Bio/Das/ProServer/Loader/agp.pm -%%SITE_PERL%%/Bio/Das/ProServer/SourceAdaptor.pm -%%SITE_PERL%%/Bio/Das/ProServer/SourceAdaptor/Transport/bioseqio.pm -%%SITE_PERL%%/Bio/Das/ProServer/SourceAdaptor/Transport/dbi.pm -%%SITE_PERL%%/Bio/Das/ProServer/SourceAdaptor/Transport/file.pm -%%SITE_PERL%%/Bio/Das/ProServer/SourceAdaptor/Transport/generic.pm -%%SITE_PERL%%/Bio/Das/ProServer/SourceAdaptor/Transport/getz.pm -%%SITE_PERL%%/Bio/Das/ProServer/SourceAdaptor/Transport/getzc.pm -%%SITE_PERL%%/Bio/Das/ProServer/SourceAdaptor/Transport/oracle.pm -%%SITE_PERL%%/Bio/Das/ProServer/SourceAdaptor/Transport/wgetz.pm -%%SITE_PERL%%/Bio/Das/ProServer/SourceAdaptor/agp.pm -%%SITE_PERL%%/Bio/Das/ProServer/SourceAdaptor/bioseq.pm -%%SITE_PERL%%/Bio/Das/ProServer/SourceAdaptor/cosmic.pm -%%SITE_PERL%%/Bio/Das/ProServer/SourceAdaptor/gensat.pm -%%SITE_PERL%%/Bio/Das/ProServer/SourceAdaptor/haplotype.pm -%%SITE_PERL%%/Bio/Das/ProServer/SourceAdaptor/image.pm -%%SITE_PERL%%/Bio/Das/ProServer/SourceAdaptor/interpro.pm -%%SITE_PERL%%/Bio/Das/ProServer/SourceAdaptor/simple.pm -%%SITE_PERL%%/Bio/Das/ProServer/SourceAdaptor/snp.pm -%%SITE_PERL%%/Bio/Das/ProServer/SourceAdaptor/sts.pm -%%SITE_PERL%%/Bio/Das/ProServer/SourceAdaptor/swissprot.pm -%%SITE_PERL%%/Bio/Das/ProServer/SourceAdaptor/trace.pm %%SITE_PERL%%/Bio/Das/Request.pm -%%SITE_PERL%%/Bio/Das/Request/Dnas.pm -%%SITE_PERL%%/Bio/Das/Request/Dsn.pm -%%SITE_PERL%%/Bio/Das/Request/Entry_points.pm -%%SITE_PERL%%/Bio/Das/Request/Feature2Segments.pm -%%SITE_PERL%%/Bio/Das/Request/Features.pm -%%SITE_PERL%%/Bio/Das/Request/Sequences.pm -%%SITE_PERL%%/Bio/Das/Request/Stylesheet.pm -%%SITE_PERL%%/Bio/Das/Request/Types.pm -%%SITE_PERL%%/Bio/Das/Segment.pm %%SITE_PERL%%/Bio/Das/Stylesheet.pm +%%SITE_PERL%%/Bio/Das/Map.pm +%%SITE_PERL%%/Bio/Das/FeatureIterator.pm +%%SITE_PERL%%/Bio/Das/Segment.pm %%SITE_PERL%%/Bio/Das/Type.pm +%%SITE_PERL%%/Bio/Das/Feature.pm %%SITE_PERL%%/Bio/Das/TypeHandler.pm %%SITE_PERL%%/Bio/Das/Util.pm -%%SITE_PERL%%/mach/auto/Bio/Das/.packlist -@dirrm %%SITE_PERL%%/mach/auto/Bio/Das -@dirrm %%SITE_PERL%%/Bio/Das/Request -@dirrm %%SITE_PERL%%/Bio/Das/ProServer/SourceAdaptor/Transport -@dirrm %%SITE_PERL%%/Bio/Das/ProServer/SourceAdaptor -@dirrm %%SITE_PERL%%/Bio/Das/ProServer/Loader -@dirrm %%SITE_PERL%%/Bio/Das/ProServer -@dirrm %%SITE_PERL%%/Bio/Das/HTTP -@dirrm %%SITE_PERL%%/Bio/Das/AGPServer/SQLStorage/MySQL -@dirrm %%SITE_PERL%%/Bio/Das/AGPServer/SQLStorage/CSV -@dirrm %%SITE_PERL%%/Bio/Das/AGPServer/SQLStorage -@dirrm %%SITE_PERL%%/Bio/Das/AGPServer +%%SITE_PERL%%/Bio/Das/Request/Sequences.pm +%%SITE_PERL%%/Bio/Das/Request/Dnas.pm +%%SITE_PERL%%/Bio/Das/Request/Types.pm +%%SITE_PERL%%/Bio/Das/Request/Feature2Segments.pm +%%SITE_PERL%%/Bio/Das/Request/Features.pm +%%SITE_PERL%%/Bio/Das/Request/Dsn.pm +%%SITE_PERL%%/Bio/Das/Request/Entry_points.pm +%%SITE_PERL%%/Bio/Das/Request/Stylesheet.pm +%%SITE_PERL%%/Bio/Das/AGPServer/SQLStorage.pm +%%SITE_PERL%%/Bio/Das/AGPServer/Proxy.pm +%%SITE_PERL%%/Bio/Das/AGPServer/Parser.pm +%%SITE_PERL%%/Bio/Das/AGPServer/Daemon.pm +%%SITE_PERL%%/Bio/Das/AGPServer/Config.pm +%%SITE_PERL%%/Bio/Das/AGPServer/SQLStorage/CSV/DB.pm +%%SITE_PERL%%/Bio/Das/AGPServer/SQLStorage/MySQL/DB.pm +%%SITE_PERL%%/Bio/Das/HTTP/Fetch.pm +@dirrmtry %%SITE_PERL%%/%%PERL_ARCH%%/auto/Bio/Das +@dirrmtry %%SITE_PERL%%/Bio/Das/Request +@dirrmtry %%SITE_PERL%%/Bio/Das/HTTP +@dirrmtry %%SITE_PERL%%/Bio/Das/AGPServer/SQLStorage/MySQL +@dirrmtry %%SITE_PERL%%/Bio/Das/AGPServer/SQLStorage/CSV +@dirrmtry %%SITE_PERL%%/Bio/Das/AGPServer/SQLStorage +@dirrmtry %%SITE_PERL%%/Bio/Das/AGPServer --- p5-Bio-Das-1.03.patch ends here --- >Release-Note: >Audit-Trail: >Unformatted:
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