Skip site navigation (1)Skip section navigation (2)
Date:      Tue, 09 Feb 2016 02:46:44 +0000
From:      bugzilla-noreply@freebsd.org
To:        freebsd-ports-bugs@FreeBSD.org
Subject:   [Bug 207032] [change request] biology/samtools: add samtools headers
Message-ID:  <bug-207032-13-qGj4mb4lRJ@https.bugs.freebsd.org/bugzilla/>
In-Reply-To: <bug-207032-13@https.bugs.freebsd.org/bugzilla/>
References:  <bug-207032-13@https.bugs.freebsd.org/bugzilla/>

next in thread | previous in thread | raw e-mail | index | archive | help
https://bugs.freebsd.org/bugzilla/show_bug.cgi?id=3D207032

--- Comment #7 from Jason Bacon <bacon4000@gmail.com> ---

They require both.  E.g. RSEM requires libbam.a, sam.h, and bam.h from
samtools, which provide a higher level interface than htslib.

I also attached a slightly better patch.  RSEM no longer looks for headers =
in
include/bam, so I changed it to include/samtools.

--=20
You are receiving this mail because:
You are the assignee for the bug.=



Want to link to this message? Use this URL: <https://mail-archive.FreeBSD.org/cgi/mid.cgi?bug-207032-13-qGj4mb4lRJ>