From owner-freebsd-ports@FreeBSD.ORG  Thu May 17 11:54:45 2007
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Date: Thu, 17 May 2007 13:43:11 +0200
From: Angelo Turetta <aturetta@commit.it>
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Subject: Re: HEADS UP: xorg 7.2 ready for testing
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Peter Jeremy wrote:
> One system had a couple
> of problems with portupgrade apparently forgetting to re-install
> packages after uninstalling them - which took a bit of cleaning up -
> and losing pieces of packages ('pkg_info -g' reported files missing).

This is an annoying known issue

          http://www.freebsd.org/cgi/query-pr.cgi?pr=110630

But I've not been able to debug it: of course, every time I try with a 
controlled set of portupgrade invocations, it never fails !!

Angelo.