From owner-svn-ports-head@freebsd.org Mon Jan 1 08:24:55 2018 Return-Path: Delivered-To: svn-ports-head@mailman.ysv.freebsd.org Received: from mx1.freebsd.org (mx1.freebsd.org [IPv6:2001:1900:2254:206a::19:1]) by mailman.ysv.freebsd.org (Postfix) with ESMTP id 8ACF0E825C2; Mon, 1 Jan 2018 08:24:55 +0000 (UTC) (envelope-from wen@FreeBSD.org) Received: from repo.freebsd.org (repo.freebsd.org [IPv6:2610:1c1:1:6068::e6a:0]) (using TLSv1.2 with cipher ECDHE-RSA-AES256-GCM-SHA384 (256/256 bits)) (Client did not present a certificate) by mx1.freebsd.org (Postfix) with ESMTPS id 620946392C; Mon, 1 Jan 2018 08:24:55 +0000 (UTC) (envelope-from wen@FreeBSD.org) Received: from repo.freebsd.org ([127.0.1.37]) by repo.freebsd.org (8.15.2/8.15.2) with ESMTP id w018OsNb027270; Mon, 1 Jan 2018 08:24:54 GMT (envelope-from wen@FreeBSD.org) Received: (from wen@localhost) by repo.freebsd.org (8.15.2/8.15.2/Submit) id w018Osi7027267; Mon, 1 Jan 2018 08:24:54 GMT (envelope-from wen@FreeBSD.org) Message-Id: <201801010824.w018Osi7027267@repo.freebsd.org> X-Authentication-Warning: repo.freebsd.org: wen set sender to wen@FreeBSD.org using -f From: Wen Heping Date: Mon, 1 Jan 2018 08:24:54 +0000 (UTC) To: ports-committers@freebsd.org, svn-ports-all@freebsd.org, svn-ports-head@freebsd.org Subject: svn commit: r457754 - head/biology/libsbml X-SVN-Group: ports-head X-SVN-Commit-Author: wen X-SVN-Commit-Paths: head/biology/libsbml X-SVN-Commit-Revision: 457754 X-SVN-Commit-Repository: ports MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit X-BeenThere: svn-ports-head@freebsd.org X-Mailman-Version: 2.1.25 Precedence: list List-Id: SVN commit messages for the ports tree for head List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , X-List-Received-Date: Mon, 01 Jan 2018 08:24:55 -0000 Author: wen Date: Mon Jan 1 08:24:53 2018 New Revision: 457754 URL: https://svnweb.freebsd.org/changeset/ports/457754 Log: - Update to 5.16.0 Modified: head/biology/libsbml/Makefile head/biology/libsbml/distinfo head/biology/libsbml/pkg-plist Modified: head/biology/libsbml/Makefile ============================================================================== --- head/biology/libsbml/Makefile Mon Jan 1 02:47:20 2018 (r457753) +++ head/biology/libsbml/Makefile Mon Jan 1 08:24:53 2018 (r457754) @@ -2,7 +2,7 @@ # $FreeBSD$ PORTNAME= libsbml -PORTVERSION= 5.15.0 +PORTVERSION= 5.16.0 CATEGORIES= biology devel MASTER_SITES= SF/sbml/${PORTNAME}/${PORTVERSION}/stable DISTNAME= libSBML-${PORTVERSION}-core-src Modified: head/biology/libsbml/distinfo ============================================================================== --- head/biology/libsbml/distinfo Mon Jan 1 02:47:20 2018 (r457753) +++ head/biology/libsbml/distinfo Mon Jan 1 08:24:53 2018 (r457754) @@ -1,3 +1,3 @@ -TIMESTAMP = 1495154421 -SHA256 (libSBML-5.15.0-core-src.tar.gz) = f975bd1fe379cc7027fd3fed9d6ae92e6dd61dda09befdfd2ffb969c324a5c28 -SIZE (libSBML-5.15.0-core-src.tar.gz) = 13767144 +TIMESTAMP = 1514788152 +SHA256 (libSBML-5.16.0-core-src.tar.gz) = 8cd1d29536db951934690d83a69e02f017406bd31d95ed82f2ebae5745a36a08 +SIZE (libSBML-5.16.0-core-src.tar.gz) = 14716040 Modified: head/biology/libsbml/pkg-plist ============================================================================== --- head/biology/libsbml/pkg-plist Mon Jan 1 02:47:20 2018 (r457753) +++ head/biology/libsbml/pkg-plist Mon Jan 1 08:24:53 2018 (r457754) @@ -78,6 +78,7 @@ include/sbml/conversion/ConversionProperties.h include/sbml/conversion/SBMLConverter.h include/sbml/conversion/SBMLConverterRegister.h include/sbml/conversion/SBMLConverterRegistry.h +include/sbml/conversion/SBMLConverterTypes.h include/sbml/conversion/SBMLFunctionDefinitionConverter.h include/sbml/conversion/SBMLIdConverter.h include/sbml/conversion/SBMLInferUnitsConverter.h @@ -412,6 +413,7 @@ lib/cmake/sbml-static-config.cmake %%PORTEXAMPLES%%%%EXAMPLESDIR%%/perl/printsupported.pl %%PORTEXAMPLES%%%%EXAMPLESDIR%%/perl/promoteParameters.pl %%PORTEXAMPLES%%%%EXAMPLESDIR%%/perl/readSBML.pl +%%PORTEXAMPLES%%%%EXAMPLESDIR%%/perl/renameSId.pl %%PORTEXAMPLES%%%%EXAMPLESDIR%%/perl/stripPackage.pl %%PORTEXAMPLES%%%%EXAMPLESDIR%%/perl/translateMath.pl %%PORTEXAMPLES%%%%EXAMPLESDIR%%/perl/unsetAnnotation.pl @@ -425,6 +427,7 @@ lib/cmake/sbml-static-config.cmake %%PORTEXAMPLES%%%%EXAMPLESDIR%%/python/addModelHistory.py %%PORTEXAMPLES%%%%EXAMPLESDIR%%/python/addingEvidenceCodes_1.py %%PORTEXAMPLES%%%%EXAMPLESDIR%%/python/addingEvidenceCodes_2.py +%%PORTEXAMPLES%%%%EXAMPLESDIR%%/python/append_to_note.py %%PORTEXAMPLES%%%%EXAMPLESDIR%%/python/appendAnnotation.py %%PORTEXAMPLES%%%%EXAMPLESDIR%%/python/callExternalValidator.py %%PORTEXAMPLES%%%%EXAMPLESDIR%%/python/convertSBML.py @@ -448,6 +451,7 @@ lib/cmake/sbml-static-config.cmake %%PORTEXAMPLES%%%%EXAMPLESDIR%%/python/readSBML.py %%PORTEXAMPLES%%%%EXAMPLESDIR%%/python/replaceOneFD.py %%PORTEXAMPLES%%%%EXAMPLESDIR%%/python/setIdFromNames.py +%%PORTEXAMPLES%%%%EXAMPLESDIR%%/python/stringInput.py %%PORTEXAMPLES%%%%EXAMPLESDIR%%/python/stripPackage.py %%PORTEXAMPLES%%%%EXAMPLESDIR%%/python/translateMath.py %%PORTEXAMPLES%%%%EXAMPLESDIR%%/python/unsetAnnotation.py @@ -523,6 +527,7 @@ lib/cmake/sbml-static-config.cmake %%PORTEXAMPLES%%%%EXAMPLESDIR%%/sample-models/from-spec/level-3/conversionfactor2.xml %%PORTEXAMPLES%%%%EXAMPLESDIR%%/sample-models/from-spec/level-3/delay.xml %%PORTEXAMPLES%%%%EXAMPLESDIR%%/sample-models/from-spec/level-3/dimerization.xml +%%PORTEXAMPLES%%%%EXAMPLESDIR%%/sample-models/from-spec/level-3/enzymekineticext.xml %%PORTEXAMPLES%%%%EXAMPLESDIR%%/sample-models/from-spec/level-3/enzymekinetics.xml %%PORTEXAMPLES%%%%EXAMPLESDIR%%/sample-models/from-spec/level-3/events.xml %%PORTEXAMPLES%%%%EXAMPLESDIR%%/sample-models/from-spec/level-3/fullydeterminedevent.xml