Date: Tue, 13 Mar 2001 15:45:44 +0200 From: johann@egenetics.com To: FreeBSD-gnats-submit@freebsd.org Subject: ports/25772: Port update: biology/p5-AcePerl (MAINTAINER) Message-ID: <E14cp7Q-000Hkl-00@fling.sanbi.ac.za>
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>Number: 25772 >Category: ports >Synopsis: Port update: biology/p5-AcePerl (MAINTAINER) >Confidential: no >Severity: non-critical >Priority: low >Responsible: freebsd-ports >State: open >Quarter: >Keywords: >Date-Required: >Class: change-request >Submitter-Id: current-users >Arrival-Date: Tue Mar 13 05:50:00 PST 2001 >Closed-Date: >Last-Modified: >Originator: Johann Visagie >Release: FreeBSD 5.0-CURRENT i386 >Organization: Electric Genetics >Environment: >Description: - Update biology/p5-AcePerl to 1.70 - This update on behalf of the FreeBSD bio-porters mailing list, which collectively maintains this port. >How-To-Repeat: >Fix: diff -ruN p5-AcePerl.bak/Makefile p5-AcePerl/Makefile --- p5-AcePerl.bak/Makefile Tue Mar 13 15:41:32 2001 +++ p5-AcePerl/Makefile Tue Mar 13 15:42:02 2001 @@ -6,10 +6,9 @@ # PORTNAME= AcePerl -PORTVERSION= 1.67 +PORTVERSION= 1.70 CATEGORIES= biology databases perl5 -MASTER_SITES= http://stein.cshl.org/AcePerl/archive/ \ - ${MASTER_SITE_PERL_CPAN} +MASTER_SITES= ${MASTER_SITE_PERL_CPAN} MASTER_SITE_SUBDIR=Ace PKGNAMEPREFIX= p5- @@ -17,17 +16,18 @@ PERL_CONFIGURE= YES -MAN3= Ace::Sequence::Feature.3 \ - Ace::Sequence.3 \ - Ace.3 \ - Ace::Sequence::FeatureList.3 \ - Ace::Sequence::Multi.3 \ - Ace::Sequence::Homol.3 \ - Ace::Object.3 \ - Ace::Local.3 \ - Ace::Iterator.3 \ - Ace::Model.3 - +MAN3= Ace.3 Ace::Browser::AceSubs.3 Ace::Graphics::Fk.3 \ + Ace::Graphics::Glyph.3 Ace::Graphics::Glyph::anchored_arrow.3 \ + Ace::Graphics::Glyph::arrow.3 Ace::Graphics::Glyph::group.3 \ + Ace::Graphics::Glyph::line.3 Ace::Graphics::Glyph::primers.3 \ + Ace::Graphics::Glyph::segments.3 \ + Ace::Graphics::Glyph::transcript.3 \ + Ace::Graphics::GlyphFactory.3 Ace::Graphics::Panel.3 \ + Ace::Graphics::Track.3 Ace::Iterator.3 Ace::Local.3 \ + Ace::Model.3 Ace::Object.3 Ace::Sequence.3 \ + Ace::Sequence::Feature.3 Ace::Sequence::FeatureList.3 \ + Ace::Sequence::GappedAlignment.3 Ace::Sequence::Homol.3 \ + Ace::Sequence::Multi.3 Ace::Sequence::Transcript.3 MANPREFIX= ${PREFIX}/lib/perl5/${PERL_VERSION} post-patch: diff -ruN p5-AcePerl.bak/distinfo p5-AcePerl/distinfo --- p5-AcePerl.bak/distinfo Tue Mar 13 15:41:32 2001 +++ p5-AcePerl/distinfo Tue Mar 13 14:48:08 2001 @@ -1 +1 @@ -MD5 (AcePerl-1.67.tar.gz) = 46c9bc547f4c8e73480ddac7cbf79d95 +MD5 (AcePerl-1.70.tar.gz) = f2ab51ce6c4aa7abc0136abd55f486b6 diff -ruN p5-AcePerl.bak/pkg-comment p5-AcePerl/pkg-comment --- p5-AcePerl.bak/pkg-comment Tue Mar 13 15:41:32 2001 +++ p5-AcePerl/pkg-comment Tue Mar 13 15:38:52 2001 @@ -1 +1 @@ -Perl interface to the ACEDB genome database system +Perl5 interface to the ACEDB genome database system diff -ruN p5-AcePerl.bak/pkg-descr p5-AcePerl/pkg-descr --- p5-AcePerl.bak/pkg-descr Tue Mar 13 15:41:32 2001 +++ p5-AcePerl/pkg-descr Tue Mar 13 15:38:37 2001 @@ -3,7 +3,7 @@ performing queries, fetching ACE objects, and updating databases. Author: Lincoln D. Stein <lstein@cshl.org> -WWW: http://stein.cshl.org/AcePerl/ +WWW: http://stein.cshl.org/AcePerl/ Port maintained by the FreeBSD bio-porters mailing list. diff -ruN p5-AcePerl.bak/pkg-plist p5-AcePerl/pkg-plist --- p5-AcePerl.bak/pkg-plist Tue Mar 13 15:41:32 2001 +++ p5-AcePerl/pkg-plist Tue Mar 13 15:22:58 2001 @@ -1,15 +1,34 @@ lib/perl5/site_perl/%%PERL_VER%%/%%PERL_ARCH%%/Ace.pm +lib/perl5/site_perl/%%PERL_VER%%/%%PERL_ARCH%%/Ace/Browser/AceSubs.pm +lib/perl5/site_perl/%%PERL_VER%%/%%PERL_ARCH%%/Ace/Browser/SearchSubs.pm +lib/perl5/site_perl/%%PERL_VER%%/%%PERL_ARCH%%/Ace/Browser/SiteDefs.pm +lib/perl5/site_perl/%%PERL_VER%%/%%PERL_ARCH%%/Ace/Browser/TreeSubs.pm lib/perl5/site_perl/%%PERL_VER%%/%%PERL_ARCH%%/Ace/Freesubs.pm +lib/perl5/site_perl/%%PERL_VER%%/%%PERL_ARCH%%/Ace/Graphics/Fk.pm +lib/perl5/site_perl/%%PERL_VER%%/%%PERL_ARCH%%/Ace/Graphics/Glyph.pm +lib/perl5/site_perl/%%PERL_VER%%/%%PERL_ARCH%%/Ace/Graphics/Glyph/anchored_arrow.pm +lib/perl5/site_perl/%%PERL_VER%%/%%PERL_ARCH%%/Ace/Graphics/Glyph/arrow.pm +lib/perl5/site_perl/%%PERL_VER%%/%%PERL_ARCH%%/Ace/Graphics/Glyph/group.pm +lib/perl5/site_perl/%%PERL_VER%%/%%PERL_ARCH%%/Ace/Graphics/Glyph/line.pm +lib/perl5/site_perl/%%PERL_VER%%/%%PERL_ARCH%%/Ace/Graphics/Glyph/primers.pm +lib/perl5/site_perl/%%PERL_VER%%/%%PERL_ARCH%%/Ace/Graphics/Glyph/segments.pm +lib/perl5/site_perl/%%PERL_VER%%/%%PERL_ARCH%%/Ace/Graphics/Glyph/transcript.pm +lib/perl5/site_perl/%%PERL_VER%%/%%PERL_ARCH%%/Ace/Graphics/GlyphFactory.pm +lib/perl5/site_perl/%%PERL_VER%%/%%PERL_ARCH%%/Ace/Graphics/Panel.pm +lib/perl5/site_perl/%%PERL_VER%%/%%PERL_ARCH%%/Ace/Graphics/Track.pm lib/perl5/site_perl/%%PERL_VER%%/%%PERL_ARCH%%/Ace/Iterator.pm lib/perl5/site_perl/%%PERL_VER%%/%%PERL_ARCH%%/Ace/Local.pm lib/perl5/site_perl/%%PERL_VER%%/%%PERL_ARCH%%/Ace/Model.pm lib/perl5/site_perl/%%PERL_VER%%/%%PERL_ARCH%%/Ace/Object.pm +lib/perl5/site_perl/%%PERL_VER%%/%%PERL_ARCH%%/Ace/Object/Wormbase.pm lib/perl5/site_perl/%%PERL_VER%%/%%PERL_ARCH%%/Ace/RPC.pm lib/perl5/site_perl/%%PERL_VER%%/%%PERL_ARCH%%/Ace/Sequence.pm lib/perl5/site_perl/%%PERL_VER%%/%%PERL_ARCH%%/Ace/Sequence/Feature.pm lib/perl5/site_perl/%%PERL_VER%%/%%PERL_ARCH%%/Ace/Sequence/FeatureList.pm +lib/perl5/site_perl/%%PERL_VER%%/%%PERL_ARCH%%/Ace/Sequence/GappedAlignment.pm lib/perl5/site_perl/%%PERL_VER%%/%%PERL_ARCH%%/Ace/Sequence/Homol.pm lib/perl5/site_perl/%%PERL_VER%%/%%PERL_ARCH%%/Ace/Sequence/Multi.pm +lib/perl5/site_perl/%%PERL_VER%%/%%PERL_ARCH%%/Ace/Sequence/Transcript.pm lib/perl5/site_perl/%%PERL_VER%%/%%PERL_ARCH%%/Ace/SocketServer.pm lib/perl5/site_perl/%%PERL_VER%%/%%PERL_ARCH%%/GFF/Filehandle.pm lib/perl5/site_perl/%%PERL_VER%%/%%PERL_ARCH%%/auto/Ace/.packlist @@ -83,4 +102,8 @@ @dirrm lib/perl5/site_perl/%%PERL_VER%%/%%PERL_ARCH%%/auto/Ace @dirrm lib/perl5/site_perl/%%PERL_VER%%/%%PERL_ARCH%%/GFF @dirrm lib/perl5/site_perl/%%PERL_VER%%/%%PERL_ARCH%%/Ace/Sequence +@dirrm lib/perl5/site_perl/%%PERL_VER%%/%%PERL_ARCH%%/Ace/Object +@dirrm lib/perl5/site_perl/%%PERL_VER%%/%%PERL_ARCH%%/Ace/Graphics/Glyph +@dirrm lib/perl5/site_perl/%%PERL_VER%%/%%PERL_ARCH%%/Ace/Graphics +@dirrm lib/perl5/site_perl/%%PERL_VER%%/%%PERL_ARCH%%/Ace/Browser @dirrm lib/perl5/site_perl/%%PERL_VER%%/%%PERL_ARCH%%/Ace >Release-Note: >Audit-Trail: >Unformatted: To Unsubscribe: send mail to majordomo@FreeBSD.org with "unsubscribe freebsd-ports" in the body of the message
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