From owner-freebsd-ports-bugs@FreeBSD.ORG Wed Oct 29 13:33:22 2014 Return-Path: Delivered-To: freebsd-ports-bugs@FreeBSD.org Received: from mx1.freebsd.org (mx1.freebsd.org [IPv6:2001:1900:2254:206a::19:1]) (using TLSv1.2 with cipher AECDH-AES256-SHA (256/256 bits)) (No client certificate requested) by hub.freebsd.org (Postfix) with ESMTPS id EC83F33F for ; Wed, 29 Oct 2014 13:33:22 +0000 (UTC) Received: from kenobi.freebsd.org (kenobi.freebsd.org [IPv6:2001:1900:2254:206a::16:76]) (using TLSv1.2 with cipher ECDHE-RSA-AES256-GCM-SHA384 (256/256 bits)) (Client did not present a certificate) by mx1.freebsd.org (Postfix) with ESMTPS id B89FDA2E for ; Wed, 29 Oct 2014 13:33:22 +0000 (UTC) Received: from bugs.freebsd.org ([127.0.1.118]) by kenobi.freebsd.org (8.14.9/8.14.9) with ESMTP id s9TDXMEc068434 for ; Wed, 29 Oct 2014 13:33:22 GMT (envelope-from bugzilla-noreply@freebsd.org) From: bugzilla-noreply@freebsd.org To: freebsd-ports-bugs@FreeBSD.org Subject: [Bug 194683] New: parts science/py-scikit-learn (py27-scikit-learn-0.15.0_1) fail due to unresolved symbols Date: Wed, 29 Oct 2014 13:33:22 +0000 X-Bugzilla-Reason: AssignedTo X-Bugzilla-Type: new X-Bugzilla-Watch-Reason: None X-Bugzilla-Product: Ports Tree X-Bugzilla-Component: Individual Port(s) X-Bugzilla-Version: Latest X-Bugzilla-Keywords: X-Bugzilla-Severity: Affects Only Me X-Bugzilla-Who: jacob.frelinger@gmail.com X-Bugzilla-Status: Needs Triage X-Bugzilla-Priority: --- X-Bugzilla-Assigned-To: demon@FreeBSD.org X-Bugzilla-Target-Milestone: --- X-Bugzilla-Flags: maintainer-feedback? X-Bugzilla-Changed-Fields: bug_id short_desc product version rep_platform op_sys bug_status bug_severity priority component assigned_to reporter flagtypes.name Message-ID: Content-Type: text/plain; charset="UTF-8" Content-Transfer-Encoding: 7bit X-Bugzilla-URL: https://bugs.freebsd.org/bugzilla/ Auto-Submitted: auto-generated MIME-Version: 1.0 X-BeenThere: freebsd-ports-bugs@freebsd.org X-Mailman-Version: 2.1.18-1 Precedence: list List-Id: Ports bug reports List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , X-List-Received-Date: Wed, 29 Oct 2014 13:33:23 -0000 https://bugs.freebsd.org/bugzilla/show_bug.cgi?id=194683 Bug ID: 194683 Summary: parts science/py-scikit-learn (py27-scikit-learn-0.15.0_1) fail due to unresolved symbols Product: Ports Tree Version: Latest Hardware: amd64 OS: Any Status: Needs Triage Severity: Affects Only Me Priority: --- Component: Individual Port(s) Assignee: demon@FreeBSD.org Reporter: jacob.frelinger@gmail.com Assignee: demon@FreeBSD.org Flags: maintainer-feedback?(demon@FreeBSD.org) Parts of py27-scikit-learn-0.15.0_1 can't be used/loaded do to unresolved symbols. trying to import the PCA module from sklearn.decomposition results in: ImportError: /usr/local/lib/libcblas.so.2: Undefined symbol "cgemv_" due to it trying to import pairwise_fast.so ldd of pairwise_fast.so shows no missing libraries: [jolly@kapu metrics]$ ldd ./pairwise_fast.so ./pairwise_fast.so: libcblas.so.2 => /usr/local/lib/libcblas.so.2 (0x80162e000) libm.so.5 => /lib/libm.so.5 (0x801844000) libpython2.7.so.1 => /usr/local/lib/libpython2.7.so.1 (0x801a6c000) libc.so.7 => /lib/libc.so.7 (0x80081f000) libgfortran.so.3 => /usr/local/lib/gcc48/libgfortran.so.3 (0x801e26000) libgcc_s.so.1 => /usr/local/lib/gcc48/libgcc_s.so.1 (0x80213b000) libquadmath.so.0 => /usr/local/lib/gcc48/libquadmath.so.0 (0x802351000) libintl.so.9 => /usr/local/lib/libintl.so.9 (0x80258c000) libutil.so.9 => /lib/libutil.so.9 (0x802796000) libthr.so.3 => /lib/libthr.so.3 (0x8029a8000) running nosetests on the site-packages/sklearn directory shows several tests failing due to the same unresolved symbol (most of which are from trying to import pairwise_fast, and one from trying to import liblinear) libmap.conf is empty and no files in /usr/local/etc/libmap.conf.d --- Comment #1 from Bugzilla Automation --- Auto-assigned to maintainer demon@FreeBSD.org -- You are receiving this mail because: You are the assignee for the bug.