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Subject: RE: Best way to compile Mysql 4.1.x with Linuxthreads support 
  on AMD64?
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>
>
>There is a known bug with mysql4.x, amd64 and innodb. If you can avoid
>using innodb then you shouldn't have any problems.

Does the bug apply for AMD64 on Linux as well?

I wanted to use InnoDB for some of the write-heavy tables

How do you compile (the port) without InnoDB?
.. there are no references to innodb or myisam in the makefile.