Skip site navigation (1)Skip section navigation (2)
Date:      Thu, 15 Aug 2019 18:26:37 GMT
From:      pkg-fallout@FreeBSD.org
To:        pkg-fallout@FreeBSD.org
Subject:   [package - 120powerpc64-quarterly][biology/freebayes] Failed for freebayes-1.2.0_1 in build
Message-ID:  <201908151826.x7FIQbqA073254@pylon.nyi.freebsd.org>

next in thread | raw e-mail | index | archive | help

You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.

Maintainer:     jwb@FreeBSD.org
Last committer: gerald@FreeBSD.org
Ident:          $FreeBSD: branches/2019Q3/biology/freebayes/Makefile 487272 2018-12-12 01:35:33Z gerald $
Log URL:        http://pylon.nyi.freebsd.org/data/120powerpc64-quarterly/509003/logs/freebayes-1.2.0_1.log
Build URL:      http://pylon.nyi.freebsd.org/build.html?mastername=120powerpc64-quarterly&build=509003
Log:

=>> Building biology/freebayes
build started at Thu Aug 15 18:19:40 UTC 2019
port directory: /usr/ports/biology/freebayes
package name: freebayes-1.2.0_1
building for: FreeBSD 120powerpc64-quarterly-job-16 12.0-RELEASE-p9 FreeBSD 12.0-RELEASE-p9 1200086 powerpc
maintained by: jwb@FreeBSD.org
Makefile ident:      $FreeBSD: branches/2019Q3/biology/freebayes/Makefile 487272 2018-12-12 01:35:33Z gerald $
Poudriere version: 3.2.8-5-gc81843e5
Host OSVERSION: 1300039
Jail OSVERSION: 1200086
Job Id: 16

---Begin Environment---
SHELL=/bin/csh
OSVERSION=1200086
UNAME_v=FreeBSD 12.0-RELEASE-p9 1200086
UNAME_r=12.0-RELEASE-p9
BLOCKSIZE=K
MAIL=/var/mail/root
STATUS=1
HOME=/root
PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin
LOCALBASE=/usr/local
USER=root
LIBEXECPREFIX=/usr/local/libexec/poudriere
POUDRIERE_VERSION=3.2.8-5-gc81843e5
MASTERMNT=/usr/local/poudriere/data/.m/120powerpc64-quarterly/ref
POUDRIERE_BUILD_TYPE=bulk
PACKAGE_BUILDING=yes
SAVED_TERM=screen
PWD=/usr/local/poudriere/data/.m/120powerpc64-quarterly/ref/.p/pool
P_PORTS_FEATURES=FLAVORS SELECTED_OPTIONS
MASTERNAME=120powerpc64-quarterly
SCRIPTPREFIX=/usr/local/share/poudriere
OLDPWD=/usr/local/poudriere/data/.m/120powerpc64-quarterly/ref/.p
SCRIPTPATH=/usr/local/share/poudriere/bulk.sh
POUDRIEREPATH=/usr/local/bin/poudriere
---End Environment---

---Begin Poudriere Port Flags/Env---
PORT_FLAGS=
PKGENV=
FLAVOR=
DEPENDS_ARGS=
MAKE_ARGS=
---End Poudriere Port Flags/Env---

---Begin OPTIONS List---
---End OPTIONS List---

--MAINTAINER--
jwb@FreeBSD.org
--End MAINTAINER--

--CONFIGURE_ARGS--

--End CONFIGURE_ARGS--

--CONFIGURE_ENV--
MAKE=gmake XDG_DATA_HOME=/wrkdirs/usr/ports/biology/freebayes/work  XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/freebayes/work  HOME=/wrkdirs/usr/ports/biology/freebayes/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/freebayes/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin SHELL=/bin/sh CONFIG_SHELL=/bin/sh
--End CONFIGURE_ENV--

--MAKE_ENV--
XDG_DATA_HOME=/wrkdirs/usr/ports/biology/freebayes/work  XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/freebayes/work  HOME=/wrkdirs/usr/ports/biology/freebayes/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/freebayes/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin NO_PIE=yes MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES ADDR2LINE="/usr/local/bin/addr2line" AR="/usr/local/bin/ar" AS="/usr/local/bin/as" CPPFILT="/usr/local/bin/c++filt" GPROF="/usr/local/bin/gprof" LD="/usr/local/bin/ld" NM="/usr/local/bin/nm" OBJCOPY="/usr/local/bin/objcopy" OBJDUMP="/usr/local/bin/objdump" RANLIB="/usr/local/bin/ranlib" READELF="/usr/local/bin/readelf" SIZE="/usr/local/bin/size" STRINGS="/usr/local/bin/strings" PREFIX=/usr/local  LOCALBASE=/usr/local  CC="gcc8" CFLAGS="-O2 -pipe  -fstack-protector-strong -Wl,-rpath=/usr/local/lib/gcc8 -fno-strict-aliasing "  CPP="cpp8" CPPFLAGS=""  LDFLAGS=" -fstack-protector-strong -Wl,-rpath=/usr/local/lib/gcc8 -
 L/usr/local/lib/gcc8 " LIBS=""  CXX="g++8" CXXFLAGS="-O2 -pipe  -fstack-protector-strong -Wl,-rpath=/usr/local/lib/gcc8  --std=c++11 -Wl,-rpath=/usr/local/lib/gcc8 "  MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install  -s -m 555"  BSD_INSTALL_LIB="install  -s -m 0644"  BSD_INSTALL_SCRIPT="install  -m 555"  BSD_INSTALL_DATA="install  -m 0644"  BSD_INSTALL_MAN="install  -m 444"
--End MAKE_ENV--

--PLIST_SUB--
OSREL=12.0 PREFIX=%D LOCALBASE=/usr/local  RESETPREFIX=/usr/local LIB32DIR=lib DOCSDIR="share/doc/freebayes"  EXAMPLESDIR="share/examples/freebayes"  DATADIR="share/freebayes"  WWWDIR="www/freebayes"  ETCDIR="etc/freebayes"
--End PLIST_SUB--

--SUB_LIST--
PREFIX=/usr/local LOCALBASE=/usr/local  DATADIR=/usr/local/share/freebayes DOCSDIR=/usr/local/share/doc/freebayes EXAMPLESDIR=/usr/local/share/examples/freebayes  WWWDIR=/usr/local/www/freebayes ETCDIR=/usr/local/etc/freebayes
--End SUB_LIST--

---Begin make.conf---
USE_PACKAGE_DEPENDS=yes
BATCH=yes
WRKDIRPREFIX=/wrkdirs
PORTSDIR=/usr/ports
PACKAGES=/packages
DISTDIR=/distfiles
PACKAGE_BUILDING=yes
PACKAGE_BUILDING_FLAVORS=yes
#### /usr/local/etc/poudriere.d/make.conf ####
# XXX: We really need this but cannot use it while 'make checksum' does not
# try the next mirror on checksum failure.  It currently retries the same
# failed mirror and then fails rather then trying another.  It *does*
# try the next if the size is mismatched though.
#MASTER_SITE_FREEBSD=yes
# Build ALLOW_MAKE_JOBS_PACKAGES with 2 jobs
MAKE_JOBS_NUMBER=2

# stable/10 includes src.conf too late but make.conf is in sys.mk
.if ${.CURDIR:M/poudriere/jails/10*/usr/src/usr.bin/xlint*}
# Disable build of llib now that head no longer has lint(1)
LINT=	true
.endif
#### /usr/ports/Mk/Scripts/ports_env.sh ####
_CCVERSION_921dbbb2=cc (GCC) 4.2.1 20070831 patched [FreeBSD] Copyright (C) 2007 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.
_ALTCCVERSION_921dbbb2=none
_CXXINTERNAL_acaad9ca=Using built-in specs. Target: powerpc64-undermydesk-freebsd Configured with: FreeBSD/powerpc64 system compiler Thread model: posix gcc version 4.2.1 20070831 patched [FreeBSD] "/usr/bin/ld" "--eh-frame-hdr" "-Qy" "-melf64ppc_fbsd" "--enable-new-dtags" "-dynamic-linker" "/libexec/ld-elf.so.1" "/usr/lib/crt1.o" "/usr/lib/crti.o" "/usr/lib/crtbegin.o" "-L/usr/lib" "-L/usr/lib" "/dev/null" "-lstdc++" "-lm" "-lgcc_s" "-lgcc" "-lc" "-lgcc_s" "-lgcc" "/usr/lib/crtsavres.o" "/usr/lib/crtend.o" "/usr/lib/crtn.o"
CC_OUTPUT_921dbbb2_58173849=yes
CC_OUTPUT_921dbbb2_9bdba57c=yes
CC_OUTPUT_921dbbb2_6a4fe7f5=cc1: error: unrecognized command line option "-std=c11"
CC_OUTPUT_921dbbb2_6bcac02b=yes
CC_OUTPUT_921dbbb2_67d20829=yes
CC_OUTPUT_921dbbb2_bfa62e83=cc1: error: unrecognized command line option "-std=gnu11"
CC_OUTPUT_921dbbb2_f0b4d593=yes
CC_OUTPUT_921dbbb2_308abb44=cc1plus: error: unrecognized command line option "-std=c++0x"
CC_OUTPUT_921dbbb2_f00456e5=cc1plus: error: unrecognized command line option "-std=c++11"
CC_OUTPUT_921dbbb2_65ad290d=cc1plus: error: unrecognized command line option "-std=c++14"
CC_OUTPUT_921dbbb2_f2776b26=cc1plus: error: unrecognized command line option "-std=c++17"
CC_OUTPUT_921dbbb2_b2657cc3=yes
CC_OUTPUT_921dbbb2_380987f7=cc1plus: error: unrecognized command line option "-std=gnu++11"
CC_OUTPUT_921dbbb2_160933ec=cc1plus: error: unrecognized command line option "-std=gnu++14"
CC_OUTPUT_921dbbb2_fb62803b=cc1plus: error: unrecognized command line option "-std=gnu++17"
_OBJC_CCVERSION_921dbbb2=cc (GCC) 4.2.1 20070831 patched [FreeBSD] Copyright (C) 2007 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.
_OBJC_ALTCCVERSION_921dbbb2=none
ARCH=powerpc64
OPSYS=FreeBSD
_OSRELEASE=12.0-RELEASE-p9
OSREL=12.0
OSVERSION=1200086
PYTHONBASE=/usr/local
CONFIGURE_MAX_CMD_LEN=262144
HAVE_PORTS_ENV=1
#### Misc Poudriere ####
GID=0
UID=0
DISABLE_MAKE_JOBS=poudriere
---End make.conf---
--Resource limits--
cpu time               (seconds, -t)  unlimited
file size           (512-blocks, -f)  unlimited
data seg size           (kbytes, -d)  33554432
stack size              (kbytes, -s)  524288
core file size      (512-blocks, -c)  unlimited
max memory size         (kbytes, -m)  unlimited
locked memory           (kbytes, -l)  unlimited
max user processes              (-u)  89999
open files                      (-n)  1024
virtual mem size        (kbytes, -v)  unlimited
swap limit              (kbytes, -w)  unlimited
socket buffer size       (bytes, -b)  unlimited
pseudo-terminals                (-p)  unlimited
kqueues                         (-k)  unlimited
umtx shared locks               (-o)  unlimited
--End resource limits--
=======================<phase: check-sanity   >============================
===>  License MIT accepted by the user
===========================================================================
=======================<phase: pkg-depends    >============================
===>   freebayes-1.2.0_1 depends on file: /usr/local/sbin/pkg - not found
===>   Installing existing package /packages/All/pkg-1.11.1.txz
[120powerpc64-quarterly-job-16] Installing pkg-1.11.1...
[120powerpc64-quarterly-job-16] Extracting pkg-1.11.1: .......... done
===>   freebayes-1.2.0_1 depends on file: /usr/local/sbin/pkg - found
===>   Returning to build of freebayes-1.2.0_1
===========================================================================
=======================<phase: fetch-depends  >============================
===========================================================================
=======================<phase: fetch          >============================
===>  License MIT accepted by the user
===> Fetching all distfiles required by freebayes-1.2.0_1 for building
===========================================================================
=======================<phase: checksum       >============================
===>  License MIT accepted by the user
===> Fetching all distfiles required by freebayes-1.2.0_1 for building
=> SHA256 Checksum OK for ekg-freebayes-v1.2.0_GH0.tar.gz.
=> SHA256 Checksum OK for walaj-SeqLib-5941c68_GH0.tar.gz.
=> SHA256 Checksum OK for jwalabroad-bwa-c02766e_GH0.tar.gz.
=> SHA256 Checksum OK for jwalabroad-fermi-lite-5bc90f8_GH0.tar.gz.
=> SHA256 Checksum OK for samtools-htslib-49fdfbd_GH0.tar.gz.
=> SHA256 Checksum OK for ekg-bamtools-e77a43f_GH0.tar.gz.
=> SHA256 Checksum OK for ekg-intervaltree-dbb4c51_GH0.tar.gz.
=> SHA256 Checksum OK for vcflib-vcflib-5e3ce04_GH0.tar.gz.
=> SHA256 Checksum OK for ekg-fastahack-c68cebb_GH0.tar.gz.
=> SHA256 Checksum OK for ekg-filevercmp-1a9b779_GH0.tar.gz.
=> SHA256 Checksum OK for ekg-fsom-a6ef318_GH0.tar.gz.
=> SHA256 Checksum OK for google-googletest-d225acc_GH0.tar.gz.
=> SHA256 Checksum OK for ekg-intervaltree-b704f19_GH0.tar.gz.
=> SHA256 Checksum OK for ekg-multichoose-73d35da_GH0.tar.gz.
=> SHA256 Checksum OK for ekg-smithwaterman-84c08d7_GH0.tar.gz.
=> SHA256 Checksum OK for ekg-tabixpp-80012f8_GH0.tar.gz.
=> SHA256 Checksum OK for samtools-htslib-0f298ce_GH0.tar.gz.
===========================================================================
=======================<phase: extract-depends>============================
===========================================================================
=======================<phase: extract        >============================
===>  License MIT accepted by the user
===> Fetching all distfiles required by freebayes-1.2.0_1 for building
===>  Extracting for freebayes-1.2.0_1
=> SHA256 Checksum OK for ekg-freebayes-v1.2.0_GH0.tar.gz.
=> SHA256 Checksum OK for walaj-SeqLib-5941c68_GH0.tar.gz.
=> SHA256 Checksum OK for jwalabroad-bwa-c02766e_GH0.tar.gz.
=> SHA256 Checksum OK for jwalabroad-fermi-lite-5bc90f8_GH0.tar.gz.
=> SHA256 Checksum OK for samtools-htslib-49fdfbd_GH0.tar.gz.
=> SHA256 Checksum OK for ekg-bamtools-e77a43f_GH0.tar.gz.
=> SHA256 Checksum OK for ekg-intervaltree-dbb4c51_GH0.tar.gz.
<snip>
/usr/local/lib/gcc8/gcc/powerpc64-portbld-freebsd12.0/8.3.0/include/emmintrin.h:2138:47: error: expected ')' before 'pmask'
   r = vec_perm (a, a, (__vector unsigned char)pmask);
                                               ^~~~~
                                               )
/usr/local/lib/gcc8/gcc/powerpc64-portbld-freebsd12.0/8.3.0/include/emmintrin.h: In function '_mm_shuffle_epi32':
/usr/local/lib/gcc8/gcc/powerpc64-portbld-freebsd12.0/8.3.0/include/emmintrin.h:2157:9: error: expected ';' before 't'
   __v4su t;
         ^~
         ;
/usr/local/lib/gcc8/gcc/powerpc64-portbld-freebsd12.0/8.3.0/include/emmintrin.h:2165:3: error: 't' undeclared (first use in this function)
   t[3] = permute_selectors[element_selector_10] + 0x10101010;
   ^
/usr/local/lib/gcc8/gcc/powerpc64-portbld-freebsd12.0/8.3.0/include/emmintrin.h:2170:37: error: expected ')' before '__A'
   return (__m128i)vec_perm ((__v4si) __A, (__v4si)__A, (__vector unsigned char)t);
                                     ^~~~
                                     )
/usr/local/lib/gcc8/gcc/powerpc64-portbld-freebsd12.0/8.3.0/include/emmintrin.h:2170:29: error: incompatible type for argument 1 of '__builtin_vec_perm'
   return (__m128i)vec_perm ((__v4si) __A, (__v4si)__A, (__vector unsigned char)t);
                             ^~~~~~~~
/usr/local/lib/gcc8/gcc/powerpc64-portbld-freebsd12.0/8.3.0/include/emmintrin.h:2170:29: note: expected '__vector(4) int' but argument is of type 'int'
In file included from /usr/local/lib/gcc8/gcc/powerpc64-portbld-freebsd12.0/8.3.0/include/emmintrin.h:62,
                 from ksw.c:29:
/usr/local/lib/gcc8/gcc/powerpc64-portbld-freebsd12.0/8.3.0/include/emmintrin.h:2170:19: error: too few arguments to function '__builtin_vec_perm'
   return (__m128i)vec_perm ((__v4si) __A, (__v4si)__A, (__vector unsigned char)t);
                   ^~~~~~~~
In file included from ksw.c:29:
/usr/local/lib/gcc8/gcc/powerpc64-portbld-freebsd12.0/8.3.0/include/emmintrin.h: In function '_mm_maskmoveu_si128':
/usr/local/lib/gcc8/gcc/powerpc64-portbld-freebsd12.0/8.3.0/include/emmintrin.h:2176:9: error: expected ';' before 'hibit'
   __v2du hibit = { 0x7f7f7f7f7f7f7f7fUL, 0x7f7f7f7f7f7f7f7fUL};
         ^~~~~~
         ;
/usr/local/lib/gcc8/gcc/powerpc64-portbld-freebsd12.0/8.3.0/include/emmintrin.h:2177:10: error: expected ';' before 'mask'
   __v16qu mask, tmp;
          ^~~~~
          ;
/usr/local/lib/gcc8/gcc/powerpc64-portbld-freebsd12.0/8.3.0/include/emmintrin.h:2180:3: error: 'tmp' undeclared (first use in this function); did you mean 'mktemp'?
   tmp = (__v16qu)_mm_loadu_si128(p);
   ^~~
   mktemp
/usr/local/lib/gcc8/gcc/powerpc64-portbld-freebsd12.0/8.3.0/include/emmintrin.h:2180:18: error: expected ';' before '_mm_loadu_si128'
   tmp = (__v16qu)_mm_loadu_si128(p);
                  ^~~~~~~~~~~~~~~
                  ;
/usr/local/lib/gcc8/gcc/powerpc64-portbld-freebsd12.0/8.3.0/include/emmintrin.h:2181:3: error: 'mask' undeclared (first use in this function)
   mask = (__v16qu)vec_cmpgt ((__v16qu)__B, (__v16qu)hibit);
   ^~~~
/usr/local/lib/gcc8/gcc/powerpc64-portbld-freebsd12.0/8.3.0/include/emmintrin.h:2181:19: error: expected ';' before '__builtin_vec_cmpgt'
   mask = (__v16qu)vec_cmpgt ((__v16qu)__B, (__v16qu)hibit);
                   ^
                   ;
/usr/local/lib/gcc8/gcc/powerpc64-portbld-freebsd12.0/8.3.0/include/emmintrin.h:2182:32: error: expected ')' before '__A'
   tmp = vec_sel (tmp, (__v16qu)__A, mask);
                                ^~~
                                )
/usr/local/lib/gcc8/gcc/powerpc64-portbld-freebsd12.0/8.3.0/include/emmintrin.h: In function '_mm_avg_epu8':
/usr/local/lib/gcc8/gcc/powerpc64-portbld-freebsd12.0/8.3.0/include/emmintrin.h:2189:38: error: expected ')' before '__A'
   return (__m128i) vec_avg ((__v16qu)__A, (__v16qu)__B);
                                      ^~~
                                      )
/usr/local/lib/gcc8/gcc/powerpc64-portbld-freebsd12.0/8.3.0/include/emmintrin.h:2189:29: error: incompatible type for argument 1 of '__builtin_vec_avg'
   return (__m128i) vec_avg ((__v16qu)__A, (__v16qu)__B);
                             ^~~~~~~~~
/usr/local/lib/gcc8/gcc/powerpc64-portbld-freebsd12.0/8.3.0/include/emmintrin.h:2189:29: note: expected '__vector(4) int' but argument is of type 'unsigned char'
In file included from /usr/local/lib/gcc8/gcc/powerpc64-portbld-freebsd12.0/8.3.0/include/emmintrin.h:62,
                 from ksw.c:29:
/usr/local/lib/gcc8/gcc/powerpc64-portbld-freebsd12.0/8.3.0/include/emmintrin.h:2189:20: error: too few arguments to function '__builtin_vec_avg'
   return (__m128i) vec_avg ((__v16qu)__A, (__v16qu)__B);
                    ^~~~~~~
In file included from ksw.c:29:
/usr/local/lib/gcc8/gcc/powerpc64-portbld-freebsd12.0/8.3.0/include/emmintrin.h: In function '_mm_avg_epu16':
/usr/local/lib/gcc8/gcc/powerpc64-portbld-freebsd12.0/8.3.0/include/emmintrin.h:2195:37: error: expected ')' before '__A'
   return (__m128i) vec_avg ((__v8hu)__A, (__v8hu)__B);
                                     ^~~
                                     )
/usr/local/lib/gcc8/gcc/powerpc64-portbld-freebsd12.0/8.3.0/include/emmintrin.h:2195:29: error: incompatible type for argument 1 of '__builtin_vec_avg'
   return (__m128i) vec_avg ((__v8hu)__A, (__v8hu)__B);
                             ^~~~~~~~
/usr/local/lib/gcc8/gcc/powerpc64-portbld-freebsd12.0/8.3.0/include/emmintrin.h:2195:29: note: expected '__vector(4) int' but argument is of type 'short unsigned int'
In file included from /usr/local/lib/gcc8/gcc/powerpc64-portbld-freebsd12.0/8.3.0/include/emmintrin.h:62,
                 from ksw.c:29:
/usr/local/lib/gcc8/gcc/powerpc64-portbld-freebsd12.0/8.3.0/include/emmintrin.h:2195:20: error: too few arguments to function '__builtin_vec_avg'
   return (__m128i) vec_avg ((__v8hu)__A, (__v8hu)__B);
                    ^~~~~~~
In file included from ksw.c:29:
/usr/local/lib/gcc8/gcc/powerpc64-portbld-freebsd12.0/8.3.0/include/emmintrin.h: In function '_mm_sad_epu8':
/usr/local/lib/gcc8/gcc/powerpc64-portbld-freebsd12.0/8.3.0/include/emmintrin.h:2202:10: error: expected ';' before 'a'
   __v16qu a, b;
          ^~
          ;
/usr/local/lib/gcc8/gcc/powerpc64-portbld-freebsd12.0/8.3.0/include/emmintrin.h:2203:10: error: expected ';' before 'vmin'
   __v16qu vmin, vmax, vabsdiff;
          ^~~~~
          ;
/usr/local/lib/gcc8/gcc/powerpc64-portbld-freebsd12.0/8.3.0/include/emmintrin.h:2204:9: error: expected ';' before 'vsum'
   __v4si vsum;
         ^~~~~
         ;
/usr/local/lib/gcc8/gcc/powerpc64-portbld-freebsd12.0/8.3.0/include/emmintrin.h:2205:16: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'zero'
   const __v4su zero = { 0, 0, 0, 0 };
                ^~~~
/usr/local/lib/gcc8/gcc/powerpc64-portbld-freebsd12.0/8.3.0/include/emmintrin.h:2205:16: error: 'zero' undeclared (first use in this function)
/usr/local/lib/gcc8/gcc/powerpc64-portbld-freebsd12.0/8.3.0/include/emmintrin.h:2205:23: error: expected expression before '{' token
   const __v4su zero = { 0, 0, 0, 0 };
                       ^
/usr/local/lib/gcc8/gcc/powerpc64-portbld-freebsd12.0/8.3.0/include/emmintrin.h:2206:9: error: expected ';' before 'result'
   __v4si result;
         ^~~~~~~
         ;
/usr/local/lib/gcc8/gcc/powerpc64-portbld-freebsd12.0/8.3.0/include/emmintrin.h:2208:3: error: 'a' undeclared (first use in this function)
   a = (__v16qu) __A;
   ^
/usr/local/lib/gcc8/gcc/powerpc64-portbld-freebsd12.0/8.3.0/include/emmintrin.h:2208:16: error: expected ';' before '__A'
   a = (__v16qu) __A;
                ^~~~
                ;
/usr/local/lib/gcc8/gcc/powerpc64-portbld-freebsd12.0/8.3.0/include/emmintrin.h:2209:3: error: 'b' undeclared (first use in this function)
   b = (__v16qu) __B;
   ^
/usr/local/lib/gcc8/gcc/powerpc64-portbld-freebsd12.0/8.3.0/include/emmintrin.h:2209:16: error: expected ';' before '__B'
   b = (__v16qu) __B;
                ^~~~
                ;
/usr/local/lib/gcc8/gcc/powerpc64-portbld-freebsd12.0/8.3.0/include/emmintrin.h:2210:3: error: 'vmin' undeclared (first use in this function); did you mean 'void'?
   vmin = vec_min (a, b);
   ^~~~
   void
/usr/local/lib/gcc8/gcc/powerpc64-portbld-freebsd12.0/8.3.0/include/emmintrin.h:2211:3: error: 'vmax' undeclared (first use in this function)
   vmax = vec_max (a, b);
   ^~~~
/usr/local/lib/gcc8/gcc/powerpc64-portbld-freebsd12.0/8.3.0/include/emmintrin.h:2212:3: error: 'vabsdiff' undeclared (first use in this function)
   vabsdiff = vec_sub (vmax, vmin);
   ^~~~~~~~
/usr/local/lib/gcc8/gcc/powerpc64-portbld-freebsd12.0/8.3.0/include/emmintrin.h:2214:3: error: 'vsum' undeclared (first use in this function)
   vsum = (__vector signed int) vec_sum4s (vabsdiff, zero);
   ^~~~
/usr/local/lib/gcc8/gcc/powerpc64-portbld-freebsd12.0/8.3.0/include/emmintrin.h:2214:11: error: '__vector' undeclared (first use in this function); did you mean 'vector'?
   vsum = (__vector signed int) vec_sum4s (vabsdiff, zero);
           ^~~~~~~~
           vector
/usr/local/lib/gcc8/gcc/powerpc64-portbld-freebsd12.0/8.3.0/include/emmintrin.h:2214:19: error: expected ')' before 'signed'
   vsum = (__vector signed int) vec_sum4s (vabsdiff, zero);
          ~        ^~~~~~~
                   )
/usr/local/lib/gcc8/gcc/powerpc64-portbld-freebsd12.0/8.3.0/include/emmintrin.h:2214:31: error: expected ';' before '__builtin_vec_sum4s'
   vsum = (__vector signed int) vec_sum4s (vabsdiff, zero);
                               ^
                               ;
/usr/local/lib/gcc8/gcc/powerpc64-portbld-freebsd12.0/8.3.0/include/emmintrin.h:2216:3: error: 'result' undeclared (first use in this function)
   result = vec_sum2s (vsum, (__vector signed int) zero);
   ^~~~~~
/usr/local/lib/gcc8/gcc/powerpc64-portbld-freebsd12.0/8.3.0/include/emmintrin.h:2216:38: error: expected ')' before 'signed'
   result = vec_sum2s (vsum, (__vector signed int) zero);
                             ~        ^~~~~~~
                                      )
/usr/local/lib/gcc8/gcc/powerpc64-portbld-freebsd12.0/8.3.0/include/emmintrin.h:2216:50: error: expected ')' before 'zero'
   result = vec_sum2s (vsum, (__vector signed int) zero);
                                                  ^~~~~
                                                  )
/usr/local/lib/gcc8/gcc/powerpc64-portbld-freebsd12.0/8.3.0/include/emmintrin.h: In function '_mm_cvtsi64_si128':
/usr/local/lib/gcc8/gcc/powerpc64-portbld-freebsd12.0/8.3.0/include/emmintrin.h:2314:3: error: can't convert a value of type 'long long int' to vector type '__vector(2) long long int' which has different size
   return __extension__ (__m128i)(__v2di){ __A, 0LL };
   ^~~~~~
/usr/local/lib/gcc8/gcc/powerpc64-portbld-freebsd12.0/8.3.0/include/emmintrin.h:2314:41: error: expected ';' before '{' token
   return __extension__ (__m128i)(__v2di){ __A, 0LL };
                                         ^
                                         ;
/usr/local/lib/gcc8/gcc/powerpc64-portbld-freebsd12.0/8.3.0/include/emmintrin.h: In function '_mm_cvtsi64x_si128':
/usr/local/lib/gcc8/gcc/powerpc64-portbld-freebsd12.0/8.3.0/include/emmintrin.h:2321:3: error: can't convert a value of type 'long long int' to vector type '__vector(2) long long int' which has different size
   return __extension__ (__m128i)(__v2di){ __A, 0LL };
   ^~~~~~
/usr/local/lib/gcc8/gcc/powerpc64-portbld-freebsd12.0/8.3.0/include/emmintrin.h:2321:41: error: expected ';' before '{' token
   return __extension__ (__m128i)(__v2di){ __A, 0LL };
                                         ^
                                         ;
ksw.c: In function 'ksw_u8':
ksw.c:185:11: warning: implicit declaration of function '_mm_movemask_epi8'; did you mean '_mm_movemask_pi8'? [-Wimplicit-function-declaration]
     cmp = _mm_movemask_epi8(_mm_cmpeq_epi8(_mm_subs_epu8(f, h), zero));
           ^~~~~~~~~~~~~~~~~
           _mm_movemask_pi8
ksw.c:185:5: error: AltiVec argument passed to unprototyped function
     cmp = _mm_movemask_epi8(_mm_cmpeq_epi8(_mm_subs_epu8(f, h), zero));
     ^~~
ksw.c: In function 'ksw_i16':
ksw.c:293:5: error: AltiVec argument passed to unprototyped function
     if(UNLIKELY(!_mm_movemask_epi8(_mm_cmpgt_epi16(f, h)))) goto end_loop8;
     ^~
gmake[5]: *** [Makefile:26: ksw.o] Error 1
gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/freebayes/work/freebayes-1.2.0/SeqLib/bwa'
gmake[4]: *** [Makefile:358: all-recursive] Error 1
gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/freebayes/work/freebayes-1.2.0/SeqLib'
gmake[3]: *** [Makefile:299: all] Error 2
gmake[3]: Leaving directory '/wrkdirs/usr/ports/biology/freebayes/work/freebayes-1.2.0/SeqLib'
gmake[2]: *** [Makefile:53: ../SeqLib/src/libseqlib.a] Error 2
gmake[2]: Leaving directory '/wrkdirs/usr/ports/biology/freebayes/work/freebayes-1.2.0/src'
gmake[1]: *** [Makefile:2: all] Error 2
gmake[1]: Leaving directory '/wrkdirs/usr/ports/biology/freebayes/work/freebayes-1.2.0'
*** Error code 1

Stop.
make: stopped in /usr/ports/biology/freebayes



Want to link to this message? Use this URL: <https://mail-archive.FreeBSD.org/cgi/mid.cgi?201908151826.x7FIQbqA073254>