Date: Mon, 30 Apr 2007 15:38:36 +0800 (CST) From: CHAO Shin <quakelee@cn.FreeBSD.org> To: FreeBSD-gnats-submit@FreeBSD.org Subject: ports/112265: [NEW PORT] science/pnetcdf Message-ID: <200704300738.l3U7cawx026179@tarsier.delphij.net> Resent-Message-ID: <200704300740.l3U7e7nk093567@freefall.freebsd.org>
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>Number: 112265 >Category: ports >Synopsis: [NEW PORT] science/pnetcdf >Confidential: no >Severity: non-critical >Priority: low >Responsible: freebsd-ports-bugs >State: open >Quarter: >Keywords: >Date-Required: >Class: change-request >Submitter-Id: current-users >Arrival-Date: Mon Apr 30 07:40:07 GMT 2007 >Closed-Date: >Last-Modified: >Originator: CHAO Shin >Release: FreeBSD 7.0-current i386 >Organization: The FreeBSD Simplified Chinese Project >Environment: System: FreeBSD portyard.sysdept.sina.com.cn 7.0-CURRENT FreeBSD 7.0-CURRENT #0: Thu Feb 1 19:02:06 CST 2007 root@portyard.sysdept.sina.com.cn:/usr/obj/usr/src/sys/GX270 i386 >Description: Add a new port, descriptions as below: Parallel-NetCDF is a library providing high-performance I/O while still maintaining file-format compatibility with Unidata's NetCDF. NetCDF gives scientific programmers a space-efficient and portable means for storing data. However, it does so in a serial manner, making it difficult to achieve high I/O performance. By making some small changes to the API specified by NetCDF, we can use MPI-IO and its collective operations. >How-To-Repeat: >Fix: --- pnetcdf.shar begins here --- # This is a shell archive. Save it in a file, remove anything before # this line, and then unpack it by entering "sh file". Note, it may # create directories; files and directories will be owned by you and # have default permissions. # # This archive contains: # # pnetcdf # pnetcdf/pkg-plist # pnetcdf/pkg-descr # pnetcdf/distinfo # pnetcdf/Makefile # pnetcdf/files # pnetcdf/files/patch-aclocal.m4 # pnetcdf/files/patch-configure # pnetcdf/files/patch-macros.make.def # echo c - pnetcdf mkdir -p pnetcdf > /dev/null 2>&1 echo x - pnetcdf/pkg-plist sed 's/^X//' >pnetcdf/pkg-plist << 'END-of-pnetcdf/pkg-plist' Xbin/ncvalid Xbin/ncmpigen Xbin/ncmpidump Xinclude/pnetcdf.h Xinclude/pnetcdf.inc Xlib/libpnetcdf.a X%%PORTDOCS%%%%DOCSDIR%%/COPYRIGHT X%%PORTDOCS%%%%DOCSDIR%%/README X%%PORTDOCS%%%%DOCSDIR%%/INSTALL X%%PORTDOCS%%@dirrm %%DOCSDIR%% END-of-pnetcdf/pkg-plist echo x - pnetcdf/pkg-descr sed 's/^X//' >pnetcdf/pkg-descr << 'END-of-pnetcdf/pkg-descr' XParallel-NetCDF is a library providing high-performance I/O Xwhile still maintaining file-format compatibility with XUnidata's NetCDF. XNetCDF gives scientific programmers a space-efficient and Xportable means for storing data. However, it does so in a Xserial manner, making it difficult to achieve high I/O Xperformance. By making some small changes to the API Xspecified by NetCDF, we can use MPI-IO and its collective Xoperations. X XWWW: http://trac.mcs.anl.gov/projects/parallel-netcdf END-of-pnetcdf/pkg-descr echo x - pnetcdf/distinfo sed 's/^X//' >pnetcdf/distinfo << 'END-of-pnetcdf/distinfo' XMD5 (parallel-netcdf-1.0.1.tar.bz2) = e906d2ee7dddaf85b06b51fc5946eb9e XSHA256 (parallel-netcdf-1.0.1.tar.bz2) = 3327d653fa65eed404dfdf0681b055d359fd48c4e33abe8f47bec335f4a3b480 XSIZE (parallel-netcdf-1.0.1.tar.bz2) = 3434372 END-of-pnetcdf/distinfo echo x - pnetcdf/Makefile sed 's/^X//' >pnetcdf/Makefile << 'END-of-pnetcdf/Makefile' X# New ports collection makefile for: parallel-netcdf X# Date created: April 30 2007 X# Whom: Chao Shin <quakelee@cn.FreeBSD.org> X# X# $FreeBSD$ X# X XPORTNAME= pnetcdf XPORTVERSION= 1.0.1 XCATEGORIES= science XMASTER_SITES= http://www-unix.mcs.anl.gov/parallel-netcdf/ XDISTNAME= parallel-netcdf-${PORTVERSION} X XMAINTAINER= quakelee@cn.FreeBSD.org XCOMMENT= A library providing high-performance I/O X XCONFLICTS= hdf-4.* X XUSE_BZIP2= YES X XOPTIONS= OPENMPI "Use openmpi instead of mpich2" off X XGNU_CONFIGURE= yes XUSE_LDCONFIG= yes XUSE_GMAKE= yes X XMAN1= ncmpigen.1 ncmpidump.1 XMAN3= pnetcdf.3 X X.include <bsd.port.pre.mk> X X.if defined(WITH_OPENMPI) XBUILD_DEPENDS= ${LOCALBASE}/mpi/openmpi/bin/mpicc:${PORTSDIR}/net/openmpi XRUN_DEPENDS= ${LOCALBASE}/mpi/openmpi/lib/libmpi.so:${PORTSDIR}/net/openmpi XCONFIGURE_ARGS= --enable-shared --mandir=${PREFIX}/man --disable-f77 --with-mpi=${PREFIX}/mpi/openmpi XCONFIGURE_ENV= CPPFLAGS="${CPPFLAGS} -I${LOCALBASE}/include -fPIC -DPIC -Df2cFortran" X.else XBUILD_DEPENDS= ${LOCALBASE}/mpich2/bin/mpicc:${PORTSDIR}/net/mpich2 XRUN_DEPENDS= ${LOCALBASE}/mpich2/lib/libmpich.so:${PORTSDIR}/net/mpich2 XCONFIGURE_ARGS= --enable-shared --mandir=${PREFIX}/man --disable-f77 --with-mpi=${PREFIX}/mpich2 XCONFIGURE_ENV= CPPFLAGS="${CPPFLAGS} -I${LOCALBASE}/include -fPIC -DPIC -Df2cFortran" X.endif X Xpost-install: X @${STRIP_CMD} ${PREFIX}/bin/ncmpidump ${PREFIX}/bin/ncmpigen ${PREFIX}/bin/ncvalid X.if !defined(NOPORTDOCS) X @${MKDIR} ${DOCSDIR} X.for file in COPYRIGHT INSTALL README X ${INSTALL_DATA} ${WRKSRC}/${file} ${DOCSDIR} X.endfor X.endif X X.include <bsd.port.post.mk> END-of-pnetcdf/Makefile echo c - pnetcdf/files mkdir -p pnetcdf/files > /dev/null 2>&1 echo x - pnetcdf/files/patch-aclocal.m4 sed 's/^X//' >pnetcdf/files/patch-aclocal.m4 << 'END-of-pnetcdf/files/patch-aclocal.m4' X--- aclocal.m4.orig Thu Dec 1 08:02:22 2005 X+++ aclocal.m4 Mon Apr 30 11:35:44 2007 X@@ -19,7 +19,7 @@ X esac X AC_MSG_CHECKING(m4 flags) X case "${M4FLAGS-unset}" in X- unset) M4FLAGS=-B10000 ;; X+ unset) M4FLAGS= ;; X esac X AC_MSG_RESULT($M4FLAGS) X AC_SUBST(M4FLAGS) END-of-pnetcdf/files/patch-aclocal.m4 echo x - pnetcdf/files/patch-configure sed 's/^X//' >pnetcdf/files/patch-configure << 'END-of-pnetcdf/files/patch-configure' X--- configure.orig Wed Dec 7 07:47:45 2005 X+++ configure Mon Apr 30 11:35:44 2007 X@@ -2769,7 +2769,7 @@ X echo "$as_me:$LINENO: checking m4 flags" >&5 X echo $ECHO_N "checking m4 flags... $ECHO_C" >&6 X case "${M4FLAGS-unset}" in X- unset) M4FLAGS=-B10000 ;; X+ unset) M4FLAGS= ;; X esac X echo "$as_me:$LINENO: result: $M4FLAGS" >&5 X echo "${ECHO_T}$M4FLAGS" >&6 END-of-pnetcdf/files/patch-configure echo x - pnetcdf/files/patch-macros.make.def sed 's/^X//' >pnetcdf/files/patch-macros.make.def << 'END-of-pnetcdf/files/patch-macros.make.def' X--- macros.make.def.orig Thu Feb 6 00:46:08 2003 X+++ macros.make.def Mon Apr 30 11:35:44 2007 X@@ -19,7 +19,7 @@ X X # Preprocessing: X M4 = m4 X-M4FLAGS = -B10000 X+M4FLAGS = X CPP = c89 -E X CPPFLAGS = $(INCLUDES) $(DEFINES) @CPPFLAGS@ X FPP = END-of-pnetcdf/files/patch-macros.make.def exit --- pnetcdf.shar ends here --- >Release-Note: >Audit-Trail: >Unformatted:
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