Date: Mon, 22 Apr 2024 12:42:06 GMT From: "Jason W. Bacon" <jwb@FreeBSD.org> To: ports-committers@FreeBSD.org, dev-commits-ports-all@FreeBSD.org, dev-commits-ports-main@FreeBSD.org Subject: git: 86c8816c2c85 - main - biology/vcflib: Update to 1.0.10 Message-ID: <202404221242.43MCg6HE019033@gitrepo.freebsd.org>
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The branch main has been updated by jwb: URL: https://cgit.FreeBSD.org/ports/commit/?id=86c8816c2c852f4a7c04169ac9d9782b3ccb0fc9 commit 86c8816c2c852f4a7c04169ac9d9782b3ccb0fc9 Author: Jason W. Bacon <jwb@FreeBSD.org> AuthorDate: 2024-04-22 12:41:23 +0000 Commit: Jason W. Bacon <jwb@FreeBSD.org> CommitDate: 2024-04-22 12:42:04 +0000 biology/vcflib: Update to 1.0.10 A few bug fixes and code cleanup Changes: https://github.com/vcflib/vcflib/releases Reported by: portscout --- biology/vcflib/Makefile | 4 ++-- biology/vcflib/distinfo | 6 +++--- biology/vcflib/pkg-plist | 3 +-- 3 files changed, 6 insertions(+), 7 deletions(-) diff --git a/biology/vcflib/Makefile b/biology/vcflib/Makefile index 7adcd1d6051d..47503953ed1f 100644 --- a/biology/vcflib/Makefile +++ b/biology/vcflib/Makefile @@ -1,7 +1,6 @@ PORTNAME= vcflib DISTVERSIONPREFIX= v -DISTVERSION= 1.0.7 -PORTREVISION= 1 +DISTVERSION= 1.0.10 CATEGORIES= biology MAINTAINER= jwb@FreeBSD.org @@ -48,6 +47,7 @@ ZIG_CMAKE_OFF= -DZIG=OFF # Clang and GCC disable sse2 by default on i386, but it's required for vcflib CFLAGS_i386= -msse2 +# filevercmp is deprecated. Remove conflict when the port is removed. CONFLICTS_INSTALL= filevercmp libdisorder # include/disorder.h include/filevercmp.h include/pdflib.hpp .include <bsd.port.options.mk> diff --git a/biology/vcflib/distinfo b/biology/vcflib/distinfo index b8b4cf640ce0..e4d3f2180621 100644 --- a/biology/vcflib/distinfo +++ b/biology/vcflib/distinfo @@ -1,6 +1,6 @@ -TIMESTAMP = 1675907454 -SHA256 (ekg-vcflib-v1.0.7_GH0.tar.gz) = 37ddf471c5fec2c7fa5d1c2c2e80b3e9d30e401ee3b82156f6ae994652950a38 -SIZE (ekg-vcflib-v1.0.7_GH0.tar.gz) = 23546536 +TIMESTAMP = 1713703391 +SHA256 (ekg-vcflib-v1.0.10_GH0.tar.gz) = 6f7f366555e5b191a509bda6d7a2078825827458ba7e9922094c4c1ebb48e693 +SIZE (ekg-vcflib-v1.0.10_GH0.tar.gz) = 23539349 SHA256 (ekg-fastahack-bb33265_GH0.tar.gz) = f671609e1a8d7cacb00065bf307c90c46116af8e5cea939b06edcdbcc6d4bc2a SIZE (ekg-fastahack-bb33265_GH0.tar.gz) = 18760 SHA256 (ekg-filevercmp-df20dcc_GH0.tar.gz) = d34bec614be638e05eb6fa419c936b9e7de58d50b1a096a5ca02aadb7db6b059 diff --git a/biology/vcflib/pkg-plist b/biology/vcflib/pkg-plist index b612a8ab875b..20c3eeca8d4e 100644 --- a/biology/vcflib/pkg-plist +++ b/biology/vcflib/pkg-plist @@ -154,8 +154,7 @@ include/ssw.hpp include/ssw_cpp.hpp include/var.hpp include/vcf-c-api.h -include/vec128int.h -include/veclib_types.h +include/vcf-wfa.h lib/libvcflib.a %%ZIG%%lib/libzig.a lib/pyvcflib%%PYTHON_EXT_SUFFIX%%.so
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