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Date:      Thu, 6 Feb 2014 13:35:50 GMT
From:      pkg-fallout-builder@FreeBSD.org
To:        pkg-fallout@FreeBSD.org
Subject:   [REL - 10i386-default][science/kalzium] Failed for kalzium-4.10.5_2 in build
Message-ID:  <201402061335.s16DZoEO030680@beefy1.isc.freebsd.org>

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You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.

Maintainer:     kde@FreeBSD.org
Last committer: danilo@FreeBSD.org
Ident:          $FreeBSD: head/science/kalzium/Makefile 336862 2013-12-18 23:33:20Z danilo $
Log URL:        http://beefy1.isc.freebsd.org/bulk/10i386-default/2014-02-06_06h17m19s/logs/kalzium-4.10.5_2.log
Build URL:      http://beefy1.isc.freebsd.org/bulk/10i386-default/2014-02-06_06h17m19s
Log:

====>> Building science/kalzium
build started at Thu Feb  6 13:32:42 UTC 2014
port directory: /usr/ports/science/kalzium
building for: FreeBSD 10i386-default-job-20 10.0-RELEASE FreeBSD 10.0-RELEASE i386
maintained by: kde@FreeBSD.org
Makefile ident:      $FreeBSD: head/science/kalzium/Makefile 336862 2013-12-18 23:33:20Z danilo $
Poudriere version: 3.1-pre

---Begin Environment---
UNAME_m=i386
UNAME_p=i386
OSVERSION=1000510
UNAME_v=FreeBSD 10.0-RELEASE
UNAME_r=10.0-RELEASE
BLOCKSIZE=K
MAIL=/var/mail/root
STATUS=1
MASTERMNT=/usr/local/poudriere/data/build/10i386-default/ref
PKG_EXT=txz
tpid=67949
PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/games:/usr/local/sbin:/usr/local/bin:/root/bin
POUDRIERE_BUILD_TYPE=bulk
PKGNG=1
PKGNAME=kalzium-4.10.5_2
PKG_DELETE=/usr/local/sbin/pkg-static delete -y -f
PKG_ADD=/usr/local/sbin/pkg-static add
PWD=/root
MASTERNAME=10i386-default
USER=root
HOME=/root
POUDRIERE_VERSION=3.1-pre
LOCALBASE=/usr/local
PACKAGE_BUILDING=yes
PKG_VERSION=/poudriere/pkg-static version
PKG_BIN=/usr/local/sbin/pkg-static
---End Environment---

---Begin OPTIONS List---
---End OPTIONS List---

--CONFIGURE_ARGS--
--with-qt-includes=/usr/local/include/qt4  --with-qt-libraries=/usr/local/lib/qt4  --with-extra-includes=/usr/local/include  --with-extra-libs=/usr/local/lib
--End CONFIGURE_ARGS--

--CONFIGURE_ENV--
TMPDIR="/tmp" QTDIR="/usr/local" QMAKE="/usr/local/bin/qmake-qt4"  MOC="/usr/local/bin/moc-qt4" RCC="/usr/local/bin/rcc" UIC="/usr/local/bin/uic-qt4"  QMAKESPEC="/usr/local/share/qt4/mkspecs/freebsd-$(ccver="$(g++46 --version)"; case "$ccver" in *clang*) echo clang ;; *) echo g++ ;; esac)" PKG_CONFIG=pkgconf SHELL=/bin/sh CONFIG_SHELL=/bin/sh
--End CONFIGURE_ENV--

--MAKE_ENV--
TMPDIR="/tmp" SHELL=/bin/sh NO_LINT=YES ADDR2LINE="/usr/local/bin/addr2line" AR="/usr/local/bin/ar" AS="/usr/local/bin/as" CPPFILT="/usr/local/bin/c++filt" GPROF="/usr/local/bin/gprof" LD="/usr/local/bin/ld" NM="/usr/local/bin/nm" OBJCOPY="/usr/local/bin/objcopy" OBJDUMP="/usr/local/bin/objdump" RANLIB="/usr/local/bin/ranlib" READELF="/usr/local/bin/readelf" SIZE="/usr/local/bin/size" STRINGS="/usr/local/bin/strings" PREFIX=/usr/local/kde4  LOCALBASE=/usr/local  LIBDIR="/usr/lib"  CC="gcc46" CFLAGS="-O2 -pipe -Wl,-rpath=/usr/local/lib/gcc46 -fno-strict-aliasing"  CPP="cpp46" CPPFLAGS=""  LDFLAGS=" -Wl,-rpath=/usr/local/lib/gcc46 -L/usr/local/lib/gcc46"  CXX="g++46" CXXFLAGS="-O2 -pipe -Wl,-rpath=/usr/local/lib/gcc46 -fno-strict-aliasing -Wl,-rpath=/usr/local/lib/gcc46"  MANPREFIX="/usr/local/kde4" BSD_INSTALL_PROGRAM="install  -s -o root -g wheel -m 555"  BSD_INSTALL_LIB="install  -s -o root -g wheel -m 444"  BSD_INSTALL_SCRIPT="install  -o root -g wheel -m 555"  BSD_INSTALL_DATA="in
 stall  -o root -g wheel -m 444"  BSD_INSTALL_MAN="install  -o root -g wheel -m 444"
--End MAKE_ENV--

--SUB_LIST--
PREFIX=/usr/local/kde4
LOCALBASE=/usr/local
DATADIR=/usr/local/kde4/share/kalzium
DOCSDIR=/usr/local/kde4/share/doc/kalzium
EXAMPLESDIR=/usr/local/kde4/share/examples/kalzium
WWWDIR=/usr/local/kde4/www/kalzium
ETCDIR=/usr/local/kde4/etc/kalzium
--End SUB_LIST--

---Begin make.conf---
ARCH=i386
MACHINE=i386
MACHINE_ARCH=i386
USE_PACKAGE_DEPENDS=yes
BATCH=yes
WRKDIRPREFIX=/wrkdirs
PORTSDIR=/usr/ports
PACKAGES=/packages
DISTDIR=/distfiles
#### /usr/local/etc/poudriere.d/make.conf ####
WITH_PKGNG=yes
NO_RESTRICTED=yes
DISABLE_MAKE_JOBS=poudriere
---End make.conf---
===>  Cleaning for kalzium-4.10.5_2
=======================<phase: check-config   >============================
===========================================================================
=======================<phase: pkg-depends    >============================
===>   kalzium-4.10.5_2 depends on file: /usr/local/sbin/pkg - not found
===>    Verifying install for /usr/local/sbin/pkg in /usr/ports/ports-mgmt/pkg
===>   Installing existing package /packages/All/pkg-1.2.6.txz
Installing pkg-1.2.6... done
If you are upgrading from the old package format, first run:

  # pkg2ng
===>   Returning to build of kalzium-4.10.5_2
===========================================================================
=======================<phase: fetch-depends  >============================
===========================================================================
=======================<phase: fetch          >============================
===> Fetching all distfiles required by kalzium-4.10.5_2 for building
===========================================================================
=======================<phase: checksum       >============================
===> Fetching all distfiles required by kalzium-4.10.5_2 for building
=> SHA256 Checksum OK for KDE/4.10.5/kalzium-4.10.5.tar.xz.
===========================================================================
=======================<phase: extract-depends>============================
===>   kalzium-4.10.5_2 depends on file: /usr/local/bin/ocamlc - not found
===>    Verifying install for /usr/local/bin/ocamlc in /usr/ports/lang/ocaml
===>   Installing existing package /packages/All/ocaml-3.12.1_1.txz
Installing ocaml-3.12.1_1...Installing libX11-1.6.2,1...Installing kbproto-1.0.6... done
Installing libXau-1.0.8...Installing xproto-7.0.25... done
 done
Installing libXdmcp-1.1.1... done
Installing libpthread-stubs-0.3_4... done
Installing libxcb-1.9.3...Installing libxml2-2.8.0_3... done
 done
 done
Installing tk85-8.5.15...Installing libXrender-0.9.8...Installing renderproto-0.11.1... done
 done
Installing libXext-1.3.2,1...Installing xextproto-7.2.1... done
 done
Installing libXScrnSaver-1.2.2...Installing scrnsaverproto-1.2.2... done
 done
Installing libXft-2.3.1...Installing fontconfig-2.11.0_1,1...Installing expat-2.1.0... done
Installing freetype2-2.5.2... done
Running fc-cache to build fontconfig cache...
/usr/local/share/fonts: skipping, no such directory
/usr/local/lib/X11/fonts: caching, new cache contents: 0 fonts, 1 dirs
/usr/local/lib/X11/fonts/local: caching, new cache contents: 0 fonts, 0 dirs
/root/.local/share/fonts: skipping, no such directory
/root/.fonts: skipping, no such directory
/usr/local/share/fonts: skipping, no such directory
/usr/local/lib/X11/fonts: caching, new cache contents: 0 fonts, 1 dirs
/root/.local/share/fonts: skipping, no such directory
/root/.fonts: skipping, no such directory
/var/db/fontconfig: cleaning cache directory
/root/.cache/fontconfig: not cleaning non-existent cache directory
/root/.fontconfig: not cleaning non-existent cache directory
fc-cache: succeeded
 done
 done
Installing tcl85-8.5.15_2... done
 done
 done
===>   Returning to build of kalzium-4.10.5_2
===========================================================================
=======================<phase: extract        >============================
===> Fetching all distfiles required by kalzium-4.10.5_2 for building
===>  Extracting for kalzium-4.10.5_2
=> SHA256 Checksum OK for KDE/4.10.5/kalzium-4.10.5.tar.xz.
===========================================================================
=======================<phase: patch-depends  >============================
===>   kalzium-4.10.5_2 depends on file: /usr/local/bin/ocamlc - found
===========================================================================
=======================<phase: patch          >============================
===>  Patching for kalzium-4.10.5_2
===========================================================================
=======================<phase: build-depends  >============================
===>   kalzium-4.10.5_2 depends on file: /usr/local/libdata/pkgconfig/eigen2.pc - not found
===>    Verifying install for /usr/local/libdata/pkgconfig/eigen2.pc in /usr/ports/math/eigen2
===>   Installing existing package /packages/All/eigen2-2.0.17,1.txz
Installing eigen2-2.0.17,1... done
===>   Returning to build of kalzium-4.10.5_2
===>   kalzium-4.10.5_2 depends on file: /usr/local/lib/ocaml/facile/facile.a - not found
===>    Verifying install for /usr/local/lib/ocaml/facile/facile.a in /usr/ports/math/facile
===>   Installing existing package /packages/All/facile-1.1_2.txz
Installing facile-1.1_2... done
===>   Returning to build of kalzium-4.10.5_2
===>   kalzium-4.10.5_2 depends on file: /usr/local/bin/ocamlc - found
===>   kalzium-4.10.5_2 depends on file: /usr/local/bin/cmake - not found
===>    Verifying install for /usr/local/bin/cmake in /usr/ports/devel/cmake
===>   Installing existing package /packages/All/cmake-2.8.12.1.txz
Installing cmake-2.8.12.1...Installing cmake-modules-2.8.12.1_1... done
 done
===>   Returning to build of kalzium-4.10.5_2
===>   kalzium-4.10.5_2 depends on executable: pkgconf - not found
===>    Verifying install for pkgconf in /usr/ports/devel/pkgconf
===>   Installing existing package /packages/All/pkgconf-0.9.4.txz
Installing pkgconf-0.9.4... done
===>   Returning to build of kalzium-4.10.5_2
===>   kalzium-4.10.5_2 depends on executable: gcc46 - not found
===>    Verifying install for gcc46 in /usr/ports/lang/gcc
===>   Installing existing package /packages/All/gcc-4.6.4.txz
Installing gcc-4.6.4...Installing binutils-2.24...Installing gettext-0.18.3.1... done
 done
Installing gcc-ecj-4.5... done
Installing gmp-5.1.3... done
Installing mpc-1.0.2...Installing mpfr-3.1.2... done
 done
 done
===>   Returning to build of kalzium-4.10.5_2
===>   kalzium-4.10.5_2 depends on file: /usr/local/bin/as - found
===>   kalzium-4.10.5_2 depends on file: /usr/local/lib/qt4/libQtCore.so - not found
===>    Verifying install for /usr/local/lib/qt4/libQtCore.so in /usr/ports/devel/qt4-corelib
===>   Installing existing package /packages/All/qt4-corelib-4.8.5_1.txz
Installing qt4-corelib-4.8.5_1...Installing glib-2.36.3_1...Installing python27-2.7.6_2... done
Installing perl5-5.16.3_6...Removing /usr/local/etc/perl5_version... Done.
Creating /usr/local/etc/perl5_version... Done.
Removing stale symlinks from /usr/bin...
    Skipping /usr/bin/perl
    Skipping /usr/bin/perl5
Done.
Creating various symlinks in /usr/bin...
    Symlinking /usr/local/bin/perl5.16.3 to /usr/bin/perl
    Symlinking /usr/local/bin/perl5.16.3 to /usr/bin/perl5
<snip>
In file included from /usr/local/include/openbabel-2.0/openbabel/forcefield.h:33:0,
                 from /wrkdirs/usr/ports/science/kalzium/work/kalzium-4.10.5/src/tools/moleculeview.cpp:40:
/usr/local/include/openbabel-2.0/openbabel/base.h:229:32: warning: 'virtual const string& OpenBabel::OBGenericData::GetValue() const' was hidden [-Woverloaded-virtual]
/usr/local/include/openbabel-2.0/openbabel/griddata.h:76:12: warning:   by 'OpenBabel::OBGridData::GetValue' [-Woverloaded-virtual]
/usr/local/bin/cmake -E cmake_progress_report /wrkdirs/usr/ports/science/kalzium/work/.build/CMakeFiles 42
[ 43%] Building CXX object src/CMakeFiles/kalzium.dir/__/compoundviewer/kalziumglwidget.o
cd /wrkdirs/usr/ports/science/kalzium/work/.build/src && /usr/local/bin/g++46   -DKDE4_CMAKE_TOPLEVEL_DIR_LENGTH=39 -DKDE_DEPRECATED_WARNINGS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_CAST_TO_ASCII -DQT_NO_DEBUG -DQT_NO_STL -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_USE_FAST_CONCATENATION -DQT_USE_FAST_OPERATOR_PLUS -D_REENTRANT -O2 -pipe -Wl,-rpath=/usr/local/lib/gcc46 -fno-strict-aliasing -Wl,-rpath=/usr/local/lib/gcc46 -Wnon-virtual-dtor -Wno-long-long -Wundef -Wcast-align -Wchar-subscripts -Wall -W -Wpointer-arith -Wformat-security -fno-exceptions -DQT_NO_EXCEPTIONS -fno-check-new -fno-common -Woverloaded-virtual -fno-threadsafe-statics -fvisibility=hidden -Werror=return-type -fvisibility-inlines-hidden -O2 -DNDEBUG -DQT_NO_DEBUG -I/wrkdirs/usr/ports/science/kalzium/work/.build/src -I/wrkdirs/usr/ports/science/kalzium/work/kalzium-4.10.5/src -I/wrkdirs/usr/ports/science/kalzium/work/kalzium-4.10.5 -I/wrkdirs/usr/ports/science/kalzium/work/.build -I/wrkdirs/usr/ports/science/kalzium/wo
 rk/kalzium-4.10.5/libscience -I/wrkdirs/usr/ports/science/kalzium/work/kalzium-4.10.5/src/../compoundviewer -I/wrkdirs/usr/ports/science/kalzium/work/kalzium-4.10.5/src/tools -I/wrkdirs/usr/ports/science/kalzium/work/kalzium-4.10.5/src/calculator -I/wrkdirs/usr/ports/science/kalzium/work/kalzium-4.10.5/src/psetable -I/wrkdirs/usr/ports/science/kalzium/work/kalzium-4.10.5/src/isotopetable -I/wrkdirs/usr/ports/science/kalzium/work/.build/src/.. -I/usr/local/kde4/include -I/usr/local/kde4/include/KDE -I/usr/local/include/qt4/phonon -I/usr/local/include/qt4/QtXmlPatterns -I/usr/local/include/qt4/QtXml -I/usr/local/include/qt4/QtWebKit -I/usr/local/include/qt4/QtUiTools -I/usr/local/include/qt4/QtTest -I/usr/local/include/qt4/QtSvg -I/usr/local/include/qt4/QtSql -I/usr/local/include/qt4/QtScript -isystem /usr/local/include/qt4/QtOpenGL -I/usr/local/include/qt4/QtNetwork -I/usr/local/include/qt4/QtHelp -I/usr/local/include/qt4/QtDesigner -I/usr/local/include/qt4/QtDeclarative -I/usr/local
 /include/qt4/QtDBus -I/usr/local/include/qt4!
 /Qt3Support -isystem /usr/local/include/qt4/QtGui -isystem /usr/local/include/qt4/QtCore -I/usr/local/include/qt4/Qt -I/usr/local/share/qt4/mkspecs/default -isystem /usr/local/include/qt4 -I/usr/local/include/openbabel-2.0 -I/usr/local/include/eigen2     -D_LARGEFILE64_SOURCE -o CMakeFiles/kalzium.dir/__/compoundviewer/kalziumglwidget.o -c /wrkdirs/usr/ports/science/kalzium/work/kalzium-4.10.5/compoundviewer/kalziumglwidget.cpp
/usr/local/bin/cmake -E cmake_progress_report /wrkdirs/usr/ports/science/kalzium/work/.build/CMakeFiles 
[ 43%] Building CXX object src/CMakeFiles/kalzium.dir/calculator/calculator.o
cd /wrkdirs/usr/ports/science/kalzium/work/.build/src && /usr/local/bin/g++46   -DKDE4_CMAKE_TOPLEVEL_DIR_LENGTH=39 -DKDE_DEPRECATED_WARNINGS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_CAST_TO_ASCII -DQT_NO_DEBUG -DQT_NO_STL -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_USE_FAST_CONCATENATION -DQT_USE_FAST_OPERATOR_PLUS -D_REENTRANT -O2 -pipe -Wl,-rpath=/usr/local/lib/gcc46 -fno-strict-aliasing -Wl,-rpath=/usr/local/lib/gcc46 -Wnon-virtual-dtor -Wno-long-long -Wundef -Wcast-align -Wchar-subscripts -Wall -W -Wpointer-arith -Wformat-security -fno-exceptions -DQT_NO_EXCEPTIONS -fno-check-new -fno-common -Woverloaded-virtual -fno-threadsafe-statics -fvisibility=hidden -Werror=return-type -fvisibility-inlines-hidden -O2 -DNDEBUG -DQT_NO_DEBUG -I/wrkdirs/usr/ports/science/kalzium/work/.build/src -I/wrkdirs/usr/ports/science/kalzium/work/kalzium-4.10.5/src -I/wrkdirs/usr/ports/science/kalzium/work/kalzium-4.10.5 -I/wrkdirs/usr/ports/science/kalzium/work/.build -I/wrkdirs/usr/ports/science/kalzium/wo
 rk/kalzium-4.10.5/libscience -I/wrkdirs/usr/ports/science/kalzium/work/kalzium-4.10.5/src/../compoundviewer -I/wrkdirs/usr/ports/science/kalzium/work/kalzium-4.10.5/src/tools -I/wrkdirs/usr/ports/science/kalzium/work/kalzium-4.10.5/src/calculator -I/wrkdirs/usr/ports/science/kalzium/work/kalzium-4.10.5/src/psetable -I/wrkdirs/usr/ports/science/kalzium/work/kalzium-4.10.5/src/isotopetable -I/wrkdirs/usr/ports/science/kalzium/work/.build/src/.. -I/usr/local/kde4/include -I/usr/local/kde4/include/KDE -I/usr/local/include/qt4/phonon -I/usr/local/include/qt4/QtXmlPatterns -I/usr/local/include/qt4/QtXml -I/usr/local/include/qt4/QtWebKit -I/usr/local/include/qt4/QtUiTools -I/usr/local/include/qt4/QtTest -I/usr/local/include/qt4/QtSvg -I/usr/local/include/qt4/QtSql -I/usr/local/include/qt4/QtScript -isystem /usr/local/include/qt4/QtOpenGL -I/usr/local/include/qt4/QtNetwork -I/usr/local/include/qt4/QtHelp -I/usr/local/include/qt4/QtDesigner -I/usr/local/include/qt4/QtDeclarative -I/usr/local
 /include/qt4/QtDBus -I/usr/local/include/qt4!
 /Qt3Support -isystem /usr/local/include/qt4/QtGui -isystem /usr/local/include/qt4/QtCore -I/usr/local/include/qt4/Qt -I/usr/local/share/qt4/mkspecs/default -isystem /usr/local/include/qt4 -I/usr/local/include/openbabel-2.0 -I/usr/local/include/eigen2     -D_LARGEFILE64_SOURCE -o CMakeFiles/kalzium.dir/calculator/calculator.o -c /wrkdirs/usr/ports/science/kalzium/work/kalzium-4.10.5/src/calculator/calculator.cpp
/usr/local/bin/cmake -E cmake_progress_report /wrkdirs/usr/ports/science/kalzium/work/.build/CMakeFiles 43
[ 44%] Building CXX object src/CMakeFiles/kalzium.dir/calculator/nuclearCalculator.o
cd /wrkdirs/usr/ports/science/kalzium/work/.build/src && /usr/local/bin/g++46   -DKDE4_CMAKE_TOPLEVEL_DIR_LENGTH=39 -DKDE_DEPRECATED_WARNINGS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_CAST_TO_ASCII -DQT_NO_DEBUG -DQT_NO_STL -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_USE_FAST_CONCATENATION -DQT_USE_FAST_OPERATOR_PLUS -D_REENTRANT -O2 -pipe -Wl,-rpath=/usr/local/lib/gcc46 -fno-strict-aliasing -Wl,-rpath=/usr/local/lib/gcc46 -Wnon-virtual-dtor -Wno-long-long -Wundef -Wcast-align -Wchar-subscripts -Wall -W -Wpointer-arith -Wformat-security -fno-exceptions -DQT_NO_EXCEPTIONS -fno-check-new -fno-common -Woverloaded-virtual -fno-threadsafe-statics -fvisibility=hidden -Werror=return-type -fvisibility-inlines-hidden -O2 -DNDEBUG -DQT_NO_DEBUG -I/wrkdirs/usr/ports/science/kalzium/work/.build/src -I/wrkdirs/usr/ports/science/kalzium/work/kalzium-4.10.5/src -I/wrkdirs/usr/ports/science/kalzium/work/kalzium-4.10.5 -I/wrkdirs/usr/ports/science/kalzium/work/.build -I/wrkdirs/usr/ports/science/kalzium/wo
 rk/kalzium-4.10.5/libscience -I/wrkdirs/usr/ports/science/kalzium/work/kalzium-4.10.5/src/../compoundviewer -I/wrkdirs/usr/ports/science/kalzium/work/kalzium-4.10.5/src/tools -I/wrkdirs/usr/ports/science/kalzium/work/kalzium-4.10.5/src/calculator -I/wrkdirs/usr/ports/science/kalzium/work/kalzium-4.10.5/src/psetable -I/wrkdirs/usr/ports/science/kalzium/work/kalzium-4.10.5/src/isotopetable -I/wrkdirs/usr/ports/science/kalzium/work/.build/src/.. -I/usr/local/kde4/include -I/usr/local/kde4/include/KDE -I/usr/local/include/qt4/phonon -I/usr/local/include/qt4/QtXmlPatterns -I/usr/local/include/qt4/QtXml -I/usr/local/include/qt4/QtWebKit -I/usr/local/include/qt4/QtUiTools -I/usr/local/include/qt4/QtTest -I/usr/local/include/qt4/QtSvg -I/usr/local/include/qt4/QtSql -I/usr/local/include/qt4/QtScript -isystem /usr/local/include/qt4/QtOpenGL -I/usr/local/include/qt4/QtNetwork -I/usr/local/include/qt4/QtHelp -I/usr/local/include/qt4/QtDesigner -I/usr/local/include/qt4/QtDeclarative -I/usr/local
 /include/qt4/QtDBus -I/usr/local/include/qt4!
 /Qt3Support -isystem /usr/local/include/qt4/QtGui -isystem /usr/local/include/qt4/QtCore -I/usr/local/include/qt4/Qt -I/usr/local/share/qt4/mkspecs/default -isystem /usr/local/include/qt4 -I/usr/local/include/openbabel-2.0 -I/usr/local/include/eigen2     -D_LARGEFILE64_SOURCE -o CMakeFiles/kalzium.dir/calculator/nuclearCalculator.o -c /wrkdirs/usr/ports/science/kalzium/work/kalzium-4.10.5/src/calculator/nuclearCalculator.cpp
/usr/local/bin/cmake -E cmake_progress_report /wrkdirs/usr/ports/science/kalzium/work/.build/CMakeFiles 44
[ 45%] Building CXX object src/CMakeFiles/kalzium.dir/calculator/gasCalculator.o
cd /wrkdirs/usr/ports/science/kalzium/work/.build/src && /usr/local/bin/g++46   -DKDE4_CMAKE_TOPLEVEL_DIR_LENGTH=39 -DKDE_DEPRECATED_WARNINGS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_CAST_TO_ASCII -DQT_NO_DEBUG -DQT_NO_STL -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_USE_FAST_CONCATENATION -DQT_USE_FAST_OPERATOR_PLUS -D_REENTRANT -O2 -pipe -Wl,-rpath=/usr/local/lib/gcc46 -fno-strict-aliasing -Wl,-rpath=/usr/local/lib/gcc46 -Wnon-virtual-dtor -Wno-long-long -Wundef -Wcast-align -Wchar-subscripts -Wall -W -Wpointer-arith -Wformat-security -fno-exceptions -DQT_NO_EXCEPTIONS -fno-check-new -fno-common -Woverloaded-virtual -fno-threadsafe-statics -fvisibility=hidden -Werror=return-type -fvisibility-inlines-hidden -O2 -DNDEBUG -DQT_NO_DEBUG -I/wrkdirs/usr/ports/science/kalzium/work/.build/src -I/wrkdirs/usr/ports/science/kalzium/work/kalzium-4.10.5/src -I/wrkdirs/usr/ports/science/kalzium/work/kalzium-4.10.5 -I/wrkdirs/usr/ports/science/kalzium/work/.build -I/wrkdirs/usr/ports/science/kalzium/wo
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[ 46%] Building CXX object src/CMakeFiles/kalzium.dir/calculator/concCalculator.o
cd /wrkdirs/usr/ports/science/kalzium/work/.build/src && /usr/local/bin/g++46   -DKDE4_CMAKE_TOPLEVEL_DIR_LENGTH=39 -DKDE_DEPRECATED_WARNINGS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_CAST_TO_ASCII -DQT_NO_DEBUG -DQT_NO_STL -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_USE_FAST_CONCATENATION -DQT_USE_FAST_OPERATOR_PLUS -D_REENTRANT -O2 -pipe -Wl,-rpath=/usr/local/lib/gcc46 -fno-strict-aliasing -Wl,-rpath=/usr/local/lib/gcc46 -Wnon-virtual-dtor -Wno-long-long -Wundef -Wcast-align -Wchar-subscripts -Wall -W -Wpointer-arith -Wformat-security -fno-exceptions -DQT_NO_EXCEPTIONS -fno-check-new -fno-common -Woverloaded-virtual -fno-threadsafe-statics -fvisibility=hidden -Werror=return-type -fvisibility-inlines-hidden -O2 -DNDEBUG -DQT_NO_DEBUG -I/wrkdirs/usr/ports/science/kalzium/work/.build/src -I/wrkdirs/usr/ports/science/kalzium/work/kalzium-4.10.5/src -I/wrkdirs/usr/ports/science/kalzium/work/kalzium-4.10.5 -I/wrkdirs/usr/ports/science/kalzium/work/.build -I/wrkdirs/usr/ports/science/kalzium/wo
 rk/kalzium-4.10.5/libscience -I/wrkdirs/usr/ports/science/kalzium/work/kalzium-4.10.5/src/../compoundviewer -I/wrkdirs/usr/ports/science/kalzium/work/kalzium-4.10.5/src/tools -I/wrkdirs/usr/ports/science/kalzium/work/kalzium-4.10.5/src/calculator -I/wrkdirs/usr/ports/science/kalzium/work/kalzium-4.10.5/src/psetable -I/wrkdirs/usr/ports/science/kalzium/work/kalzium-4.10.5/src/isotopetable -I/wrkdirs/usr/ports/science/kalzium/work/.build/src/.. -I/usr/local/kde4/include -I/usr/local/kde4/include/KDE -I/usr/local/include/qt4/phonon -I/usr/local/include/qt4/QtXmlPatterns -I/usr/local/include/qt4/QtXml -I/usr/local/include/qt4/QtWebKit -I/usr/local/include/qt4/QtUiTools -I/usr/local/include/qt4/QtTest -I/usr/local/include/qt4/QtSvg -I/usr/local/include/qt4/QtSql -I/usr/local/include/qt4/QtScript -isystem /usr/local/include/qt4/QtOpenGL -I/usr/local/include/qt4/QtNetwork -I/usr/local/include/qt4/QtHelp -I/usr/local/include/qt4/QtDesigner -I/usr/local/include/qt4/QtDeclarative -I/usr/local
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/wrkdirs/usr/ports/science/kalzium/work/kalzium-4.10.5/src/calculator/concCalculator.cpp: In member function 'double concCalculator::massSolvent()':
/wrkdirs/usr/ports/science/kalzium/work/kalzium-4.10.5/src/calculator/concCalculator.cpp:596:12: warning: 'mass' may be used uninitialized in this function [-Wuninitialized]
/wrkdirs/usr/ports/science/kalzium/work/kalzium-4.10.5/src/calculator/concCalculator.cpp: In member function 'double concCalculator::volumeSolvent()':
/wrkdirs/usr/ports/science/kalzium/work/kalzium-4.10.5/src/calculator/concCalculator.cpp:555:12: warning: 'volume' may be used uninitialized in this function [-Wuninitialized]
/wrkdirs/usr/ports/science/kalzium/work/kalzium-4.10.5/src/calculator/concCalculator.cpp: In member function 'double concCalculator::molesSolvent()':
/wrkdirs/usr/ports/science/kalzium/work/kalzium-4.10.5/src/calculator/concCalculator.cpp:576:12: warning: 'moles' may be used uninitialized in this function [-Wuninitialized]
/wrkdirs/usr/ports/science/kalzium/work/kalzium-4.10.5/src/calculator/concCalculator.cpp: In member function 'double concCalculator::massSolute()':
/wrkdirs/usr/ports/science/kalzium/work/kalzium-4.10.5/src/calculator/concCalculator.cpp:692:12: warning: 'mass' may be used uninitialized in this function [-Wuninitialized]
/wrkdirs/usr/ports/science/kalzium/work/kalzium-4.10.5/src/calculator/concCalculator.cpp: In member function 'double concCalculator::volumeSolute()':
/wrkdirs/usr/ports/science/kalzium/work/kalzium-4.10.5/src/calculator/concCalculator.cpp:620:12: warning: 'volume' may be used uninitialized in this function [-Wuninitialized]
/wrkdirs/usr/ports/science/kalzium/work/kalzium-4.10.5/src/calculator/concCalculator.cpp: In member function 'double concCalculator::eqtsSolute()':
/wrkdirs/usr/ports/science/kalzium/work/kalzium-4.10.5/src/calculator/concCalculator.cpp:651:12: warning: 'eqts' may be used uninitialized in this function [-Wuninitialized]
/wrkdirs/usr/ports/science/kalzium/work/kalzium-4.10.5/src/calculator/concCalculator.cpp: In member function 'double concCalculator::molesSolute()':
/wrkdirs/usr/ports/science/kalzium/work/kalzium-4.10.5/src/calculator/concCalculator.cpp:627:12: warning: 'moles' may be used uninitialized in this function [-Wuninitialized]
/wrkdirs/usr/ports/science/kalzium/work/kalzium-4.10.5/src/calculator/concCalculator.cpp: In member function 'void concCalculator::calculateAmtSolvent()':
/wrkdirs/usr/ports/science/kalzium/work/kalzium-4.10.5/src/calculator/concCalculator.cpp:486:77: warning: 'volSolvent' may be used uninitialized in this function [-Wuninitialized]
/wrkdirs/usr/ports/science/kalzium/work/kalzium-4.10.5/src/calculator/concCalculator.cpp:483:59: warning: 'massSolvent' may be used uninitialized in this function [-Wuninitialized]
/wrkdirs/usr/ports/science/kalzium/work/kalzium-4.10.5/src/calculator/concCalculator.cpp:465:59: warning: 'moleSolvent' may be used uninitialized in this function [-Wuninitialized]
/wrkdirs/usr/ports/science/kalzium/work/kalzium-4.10.5/src/calculator/concCalculator.cpp: In member function 'void concCalculator::calculateMolarMassSolvent()':
/wrkdirs/usr/ports/science/kalzium/work/kalzium-4.10.5/src/calculator/concCalculator.cpp:372:54: warning: 'numMoles' may be used uninitialized in this function [-Wuninitialized]
/wrkdirs/usr/ports/science/kalzium/work/kalzium-4.10.5/src/calculator/concCalculator.cpp: In member function 'void concCalculator::calculateEqtMass()':
/wrkdirs/usr/ports/science/kalzium/work/kalzium-4.10.5/src/calculator/concCalculator.cpp:342:43: warning: 'numEqts' may be used uninitialized in this function [-Wuninitialized]
/wrkdirs/usr/ports/science/kalzium/work/kalzium-4.10.5/src/calculator/concCalculator.cpp: In member function 'void concCalculator::calculateMolarMass()':
/wrkdirs/usr/ports/science/kalzium/work/kalzium-4.10.5/src/calculator/concCalculator.cpp:304:46: warning: 'numMoles' may be used uninitialized in this function [-Wuninitialized]
/wrkdirs/usr/ports/science/kalzium/work/kalzium-4.10.5/src/calculator/concCalculator.cpp: In member function 'void concCalculator::calculateAmtSolute()':
/wrkdirs/usr/ports/science/kalzium/work/kalzium-4.10.5/src/calculator/concCalculator.cpp:256:68: warning: 'volSolute' may be used uninitialized in this function [-Wuninitialized]
/wrkdirs/usr/ports/science/kalzium/work/kalzium-4.10.5/src/calculator/concCalculator.cpp:253:51: warning: 'massSolute' may be used uninitialized in this function [-Wuninitialized]
/wrkdirs/usr/ports/science/kalzium/work/kalzium-4.10.5/src/calculator/concCalculator.cpp:231:65: warning: 'eqtsSolute' may be used uninitialized in this function [-Wuninitialized]
/wrkdirs/usr/ports/science/kalzium/work/kalzium-4.10.5/src/calculator/concCalculator.cpp:228:68: warning: 'molesSolute' may be used uninitialized in this function [-Wuninitialized]
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cd /wrkdirs/usr/ports/science/kalzium/work/.build/src && /usr/local/bin/g++46   -DKDE4_CMAKE_TOPLEVEL_DIR_LENGTH=39 -DKDE_DEPRECATED_WARNINGS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_CAST_TO_ASCII -DQT_NO_DEBUG -DQT_NO_STL -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_USE_FAST_CONCATENATION -DQT_USE_FAST_OPERATOR_PLUS -D_REENTRANT -O2 -pipe -Wl,-rpath=/usr/local/lib/gcc46 -fno-strict-aliasing -Wl,-rpath=/usr/local/lib/gcc46 -Wnon-virtual-dtor -Wno-long-long -Wundef -Wcast-align -Wchar-subscripts -Wall -W -Wpointer-arith -Wformat-security -fno-exceptions -DQT_NO_EXCEPTIONS -fno-check-new -fno-common -Woverloaded-virtual -fno-threadsafe-statics -fvisibility=hidden -Werror=return-type -fvisibility-inlines-hidden -O2 -DNDEBUG -DQT_NO_DEBUG -I/wrkdirs/usr/ports/science/kalzium/work/.build/src -I/wrkdirs/usr/ports/science/kalzium/work/kalzium-4.10.5/src -I/wrkdirs/usr/ports/science/kalzium/work/kalzium-4.10.5 -I/wrkdirs/usr/ports/science/kalzium/work/.build -I/wrkdirs/usr/ports/science/kalzium/wo
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/wrkdirs/usr/ports/science/kalzium/work/kalzium-4.10.5/src/calculator/titrationCalculator.cpp: In member function 'void titrationCalculator::plot()':
/wrkdirs/usr/ports/science/kalzium/work/kalzium-4.10.5/src/calculator/titrationCalculator.cpp:200:22: warning: 'cn' may be used uninitialized in this function [-Wuninitialized]
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cd /wrkdirs/usr/ports/science/kalzium/work/.build/src && /usr/local/bin/g++46   -DKDE4_CMAKE_TOPLEVEL_DIR_LENGTH=39 -DKDE_DEPRECATED_WARNINGS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_CAST_TO_ASCII -DQT_NO_DEBUG -DQT_NO_STL -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_USE_FAST_CONCATENATION -DQT_USE_FAST_OPERATOR_PLUS -D_REENTRANT -O2 -pipe -Wl,-rpath=/usr/local/lib/gcc46 -fno-strict-aliasing -Wl,-rpath=/usr/local/lib/gcc46 -Wnon-virtual-dtor -Wno-long-long -Wundef -Wcast-align -Wchar-subscripts -Wall -W -Wpointer-arith -Wformat-security -fno-exceptions -DQT_NO_EXCEPTIONS -fno-check-new -fno-common -Woverloaded-virtual -fno-threadsafe-statics -fvisibility=hidden -Werror=return-type -fvisibility-inlines-hidden -O2 -DNDEBUG -DQT_NO_DEBUG -I/wrkdirs/usr/ports/science/kalzium/work/.build/src -I/wrkdirs/usr/ports/science/kalzium/work/kalzium-4.10.5/src -I/wrkdirs/usr/ports/science/kalzium/work/kalzium-4.10.5 -I/wrkdirs/usr/ports/science/kalzium/work/.build -I/wrkdirs/usr/ports/science/kalzium/wo
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cd /wrkdirs/usr/ports/science/kalzium/work/.build/src && /usr/local/bin/g++46   -DKDE4_CMAKE_TOPLEVEL_DIR_LENGTH=39 -DKDE_DEPRECATED_WARNINGS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_CAST_TO_ASCII -DQT_NO_DEBUG -DQT_NO_STL -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_USE_FAST_CONCATENATION -DQT_USE_FAST_OPERATOR_PLUS -D_REENTRANT -O2 -pipe -Wl,-rpath=/usr/local/lib/gcc46 -fno-strict-aliasing -Wl,-rpath=/usr/local/lib/gcc46 -Wnon-virtual-dtor -Wno-long-long -Wundef -Wcast-align -Wchar-subscripts -Wall -W -Wpointer-arith -Wformat-security -fno-exceptions -DQT_NO_EXCEPTIONS -fno-check-new -fno-common -Woverloaded-virtual -fno-threadsafe-statics -fvisibility=hidden -Werror=return-type -fvisibility-inlines-hidden -O2 -DNDEBUG -DQT_NO_DEBUG -I/wrkdirs/usr/ports/science/kalzium/work/.build/src -I/wrkdirs/usr/ports/science/kalzium/work/kalzium-4.10.5/src -I/wrkdirs/usr/ports/science/kalzium/work/kalzium-4.10.5 -I/wrkdirs/usr/ports/science/kalzium/work/.build -I/wrkdirs/usr/ports/science/kalzium/wo
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 /include/qt4/QtDBus -I/usr/local/include/qt4!
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cd /wrkdirs/usr/ports/science/kalzium/work/.build/src && /usr/local/bin/g++46   -DKDE4_CMAKE_TOPLEVEL_DIR_LENGTH=39 -DKDE_DEPRECATED_WARNINGS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_CAST_TO_ASCII -DQT_NO_DEBUG -DQT_NO_STL -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_USE_FAST_CONCATENATION -DQT_USE_FAST_OPERATOR_PLUS -D_REENTRANT -O2 -pipe -Wl,-rpath=/usr/local/lib/gcc46 -fno-strict-aliasing -Wl,-rpath=/usr/local/lib/gcc46 -Wnon-virtual-dtor -Wno-long-long -Wundef -Wcast-align -Wchar-subscripts -Wall -W -Wpointer-arith -Wformat-security -fno-exceptions -DQT_NO_EXCEPTIONS -fno-check-new -fno-common -Woverloaded-virtual -fno-threadsafe-statics -fvisibility=hidden -Werror=return-type -fvisibility-inlines-hidden -O2 -DNDEBUG -DQT_NO_DEBUG -I/wrkdirs/usr/ports/science/kalzium/work/.build/src -I/wrkdirs/usr/ports/science/kalzium/work/kalzium-4.10.5/src -I/wrkdirs/usr/ports/science/kalzium/work/kalzium-4.10.5 -I/wrkdirs/usr/ports/science/kalzium/work/.build -I/wrkdirs/usr/ports/science/kalzium/wo
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[ 80%] Building CXX object src/CMakeFiles/kalzium.dir/prefs.o
cd /wrkdirs/usr/ports/science/kalzium/work/.build/src && /usr/local/bin/g++46   -DKDE4_CMAKE_TOPLEVEL_DIR_LENGTH=39 -DKDE_DEPRECATED_WARNINGS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_CAST_TO_ASCII -DQT_NO_DEBUG -DQT_NO_STL -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_USE_FAST_CONCATENATION -DQT_USE_FAST_OPERATOR_PLUS -D_REENTRANT -O2 -pipe -Wl,-rpath=/usr/local/lib/gcc46 -fno-strict-aliasing -Wl,-rpath=/usr/local/lib/gcc46 -Wnon-virtual-dtor -Wno-long-long -Wundef -Wcast-align -Wchar-subscripts -Wall -W -Wpointer-arith -Wformat-security -fno-exceptions -DQT_NO_EXCEPTIONS -fno-check-new -fno-common -Woverloaded-virtual -fno-threadsafe-statics -fvisibility=hidden -Werror=return-type -fvisibility-inlines-hidden -O2 -DNDEBUG -DQT_NO_DEBUG -I/wrkdirs/usr/ports/science/kalzium/work/.build/src -I/wrkdirs/usr/ports/science/kalzium/work/kalzium-4.10.5/src -I/wrkdirs/usr/ports/science/kalzium/work/kalzium-4.10.5 -I/wrkdirs/usr/ports/science/kalzium/work/.build -I/wrkdirs/usr/ports/science/kalzium/wo
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 /include/qt4/QtDBus -I/usr/local/include/qt4!
 /Qt3Support -isystem /usr/local/include/qt4/QtGui -isystem /usr/local/include/qt4/QtCore -I/usr/local/include/qt4/Qt -I/usr/local/share/qt4/mkspecs/default -isystem /usr/local/include/qt4 -I/usr/local/include/openbabel-2.0 -I/usr/local/include/eigen2     -D_LARGEFILE64_SOURCE -o CMakeFiles/kalzium.dir/prefs.o -c /wrkdirs/usr/ports/science/kalzium/work/.build/src/prefs.cpp
Linking CXX executable kalzium
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 eclarative.so ../lib/libscience.so.5.0.1 /usr/local/lib/libopenbabel.so /usr/local/lib/qt4/libQtOpenGL.so ../lib/libcompoundviewer.so.5.0.1 -lavogadro /usr/local/lib/ocaml/libasmrun.a /usr/local/lib/ocaml/libnums.a -lm /usr/local/kde4/lib/libphonon.so /usr/local/kde4/lib/libkjs.so.5.0.1 /usr/local/kde4/lib/libkparts.so.5.0.1 /usr/local/kde4/lib/libkunitconversion.so.5.0.1 /usr/local/kde4/lib/libkio.so.7.0.1 /usr/local/kde4/lib/libnepomukutils.so.5.0.1 /usr/local/lib/qt4/libQtNetwork.so /usr/local/lib/qt4/libQtXml.so /usr/local/kde4/lib/libnepomuk.so.5.0.1 /usr/local/lib/libsoprano.so /usr/local/kde4/lib/libkdeui.so.7.0.1 /usr/local/kde4/lib/libkdecore.so.7.0.1 /usr/local/lib/qt4/libQtCore.so -pthread /usr/local/lib/qt4/libQtDBus.so /usr/local/lib/qt4/libQtGui.so /usr/local/lib/qt4/libQtSvg.so -Wl,-rpath,/usr/local/lib:/usr/local/lib/ocaml:/usr/local/kde4/lib:/usr/local/lib/qt4:/wrkdirs/usr/ports/science/kalzium/work/.build/lib: -Wl,-rpath-link,/usr/local/kde4/lib 
CMakeFiles/kalzium.dir/tools/obconverter.o: In function `KOpenBabel::KOpenBabel(QWidget*)':
obconverter.cpp:(.text+0x721): undefined reference to `OpenBabel::OBConversion::OBConversion(std::basic_istream<char, std::char_traits<char> >*, std::basic_ostream<char, std::char_traits<char> >*)'
CMakeFiles/kalzium.dir/tools/moleculeview.o: In function `MoleculeDialog::MoleculeDialog(QWidget*)':
moleculeview.cpp:(.text+0x22d4): undefined reference to `OpenBabel::OBPlugin::BaseFindType(std::map<char const*, OpenBabel::OBPlugin*, OpenBabel::CharPtrLess, std::allocator<std::pair<char const* const, OpenBabel::OBPlugin*> > >&, char const*)'
./lib/libcompoundviewer.so.5.0.1: undefined reference to `OpenBabel::OBConversion::Write(OpenBabel::OBBase*, std::basic_ostream<char, std::char_traits<char> >*)'
./lib/libcompoundviewer.so.5.0.1: undefined reference to `OpenBabel::OBConversion::Read(OpenBabel::OBBase*, std::basic_istream<char, std::char_traits<char> >*)'
collect2: ld returned 1 exit status
*** Error code 1

Stop.
make[3]: stopped in /wrkdirs/usr/ports/science/kalzium/work/.build
*** Error code 1

Stop.
make[2]: stopped in /wrkdirs/usr/ports/science/kalzium/work/.build
*** Error code 1

Stop.
make[1]: stopped in /wrkdirs/usr/ports/science/kalzium/work/.build
*** Error code 1

Stop.
make: stopped in /usr/ports/science/kalzium
===>  Cleaning for kalzium-4.10.5_2



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