Date: Mon, 19 Dec 2016 03:26:54 +0000 (UTC) From: Wen Heping <wen@FreeBSD.org> To: ports-committers@freebsd.org, svn-ports-all@freebsd.org, svn-ports-head@freebsd.org Subject: svn commit: r428903 - in head/biology/ncbi-blast+: . files Message-ID: <201612190326.uBJ3Qsp0033983@repo.freebsd.org>
next in thread | raw e-mail | index | archive | help
Author: wen Date: Mon Dec 19 03:26:54 2016 New Revision: 428903 URL: https://svnweb.freebsd.org/changeset/ports/428903 Log: - Update to 2.5.0 PR: 214997 Submitted by: mzaki@e-mail.ne.jp Approved by: maintainer(timeout, > 14 days) Added: head/biology/ncbi-blast+/files/patch-src_build-system_Makefile.in.top (contents, props changed) Modified: head/biology/ncbi-blast+/Makefile head/biology/ncbi-blast+/distinfo head/biology/ncbi-blast+/files/patch-src_build-system_configure head/biology/ncbi-blast+/pkg-plist Modified: head/biology/ncbi-blast+/Makefile ============================================================================== --- head/biology/ncbi-blast+/Makefile Mon Dec 19 03:21:14 2016 (r428902) +++ head/biology/ncbi-blast+/Makefile Mon Dec 19 03:26:54 2016 (r428903) @@ -2,8 +2,7 @@ # $FreeBSD$ PORTNAME= blast+ -PORTVERSION= 2.2.30 -PORTREVISION= 4 +PORTVERSION= 2.5.0 CATEGORIES= biology MASTER_SITES= http://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/${PORTVERSION}/ \ http://acadix.biz/Ports/distfiles/ Modified: head/biology/ncbi-blast+/distinfo ============================================================================== --- head/biology/ncbi-blast+/distinfo Mon Dec 19 03:21:14 2016 (r428902) +++ head/biology/ncbi-blast+/distinfo Mon Dec 19 03:26:54 2016 (r428903) @@ -1,2 +1,3 @@ -SHA256 (ncbi-blast-2.2.30+-src.tar.gz) = 7baa46cf761febf2660ddd9a8f9b5b02d12a3413561a554d2f85d4628a25aaa3 -SIZE (ncbi-blast-2.2.30+-src.tar.gz) = 18937894 +TIMESTAMP = 1480648908 +SHA256 (ncbi-blast-2.5.0+-src.tar.gz) = cce122a29d309127a478353856b351914232e78a9546941781ff0a4c18ec9c54 +SIZE (ncbi-blast-2.5.0+-src.tar.gz) = 19938544 Added: head/biology/ncbi-blast+/files/patch-src_build-system_Makefile.in.top ============================================================================== --- /dev/null 00:00:00 1970 (empty, because file is newly added) +++ head/biology/ncbi-blast+/files/patch-src_build-system_Makefile.in.top Mon Dec 19 03:26:54 2016 (r428903) @@ -0,0 +1,11 @@ +--- src/build-system/Makefile.in.top.orig 2014-11-13 01:41:55.000000000 +0900 ++++ src/build-system/Makefile.in.top 2016-12-02 16:39:58.415910000 +0900 +@@ -51,7 +51,7 @@ + done + cd $(includedir0) && find * -name CVS -prune -o -print |\ + cpio -pd $(pincludedir) +- $(INSTALL) -m 644 $(incdir)/* $(pincludedir) ++ cd $(incdir) && find * | cpio -pd $(pincludedir) + ## set up appropriate build and status directories somewhere under $(libdir)? + + install-gbench: Modified: head/biology/ncbi-blast+/files/patch-src_build-system_configure ============================================================================== --- head/biology/ncbi-blast+/files/patch-src_build-system_configure Mon Dec 19 03:21:14 2016 (r428902) +++ head/biology/ncbi-blast+/files/patch-src_build-system_configure Mon Dec 19 03:26:54 2016 (r428903) @@ -1,11 +1,11 @@ ---- src/build-system/configure.orig 2015-04-27 09:51:45.000000000 -0500 -+++ src/build-system/configure 2015-04-27 09:52:01.000000000 -0500 -@@ -1606,7 +1606,7 @@ - | --with-muparser=* | --with-hdf5=* | --with-jni=* | --with-magic=* \ - | --x-includes=* | --x-libraries=* | --with-3psw=* \ - | --target=* | --with-runpath=* | --with-relative-runpath=* \ -- | --help | --no-create | --no-recursion) -+ | --help | --no-create | --no-recursion | --localstatedir=* ) - ;; - - * ) +--- src/build-system/configure.orig 2016-09-09 21:04:16.000000000 +0900 ++++ src/build-system/configure 2016-12-02 15:04:04.258800000 +0900 +@@ -1715,7 +1715,7 @@ + | --silent | --cache-file=* | -C | --config-cache | -n | --no-create \ + | --no-recursion | --prefix=* | --exec-prefix=* | --bindir=* \ + | --libdir=* | --includedir=* | --build=* | --host=* | --target=* \ +- | --with-runpath=* | --with-relative-runpath=* \ ++ | --with-runpath=* | --with-relative-runpath=* | --localstatedir=* \ + | --with-experimental=* | --with-extra-action=* | --with-build-root=* \ + | --with-fake-root=* | --with-build-root-sfx=* | --with-check=* \ + | --with-check-tools=* | --with-ftds=[0-9]* | --with-fastcgi=[0-9]* \ Modified: head/biology/ncbi-blast+/pkg-plist ============================================================================== --- head/biology/ncbi-blast+/pkg-plist Mon Dec 19 03:21:14 2016 (r428902) +++ head/biology/ncbi-blast+/pkg-plist Mon Dec 19 03:26:54 2016 (r428903) @@ -19,6 +19,7 @@ bin/project_tree_builder bin/psiblast bin/rpsblast bin/rpstblastn +bin/run_with_lock bin/seedtop bin/segmasker bin/seqdb_demo @@ -54,6 +55,8 @@ include/ncbi-tools++/algo/blast/api/hsps include/ncbi-tools++/algo/blast/api/local_blast.hpp include/ncbi-tools++/algo/blast/api/local_db_adapter.hpp include/ncbi-tools++/algo/blast/api/local_search.hpp +include/ncbi-tools++/algo/blast/api/magicblast.hpp +include/ncbi-tools++/algo/blast/api/magicblast_options.hpp include/ncbi-tools++/algo/blast/api/msa_pssm_input.hpp include/ncbi-tools++/algo/blast/api/objmgr_query_data.hpp include/ncbi-tools++/algo/blast/api/objmgrfree_query_data.hpp @@ -90,6 +93,7 @@ include/ncbi-tools++/algo/blast/api/unif include/ncbi-tools++/algo/blast/api/version.hpp include/ncbi-tools++/algo/blast/api/windowmask_filter.hpp include/ncbi-tools++/algo/blast/blastinput/blast_args.hpp +include/ncbi-tools++/algo/blast/blastinput/blast_asn1_input.hpp include/ncbi-tools++/algo/blast/blastinput/blast_fasta_input.hpp include/ncbi-tools++/algo/blast/blastinput/blast_input.hpp include/ncbi-tools++/algo/blast/blastinput/blast_input_aux.hpp @@ -101,6 +105,7 @@ include/ncbi-tools++/algo/blast/blastinp include/ncbi-tools++/algo/blast/blastinput/deltablast_args.hpp include/ncbi-tools++/algo/blast/blastinput/igblastn_args.hpp include/ncbi-tools++/algo/blast/blastinput/igblastp_args.hpp +include/ncbi-tools++/algo/blast/blastinput/magicblast_args.hpp include/ncbi-tools++/algo/blast/blastinput/psiblast_args.hpp include/ncbi-tools++/algo/blast/blastinput/rmblastn_args.hpp include/ncbi-tools++/algo/blast/blastinput/rpsblast_args.hpp @@ -158,6 +163,7 @@ include/ncbi-tools++/algo/blast/core/gre include/ncbi-tools++/algo/blast/core/hspfilter_besthit.h include/ncbi-tools++/algo/blast/core/hspfilter_collector.h include/ncbi-tools++/algo/blast/core/hspfilter_culling.h +include/ncbi-tools++/algo/blast/core/hspfilter_mapper.h include/ncbi-tools++/algo/blast/core/link_hsps.h include/ncbi-tools++/algo/blast/core/lookup_util.h include/ncbi-tools++/algo/blast/core/lookup_wrap.h @@ -182,6 +188,7 @@ include/ncbi-tools++/algo/blast/format/b include/ncbi-tools++/algo/blast/format/build_archive.hpp include/ncbi-tools++/algo/blast/format/data4xml2format.hpp include/ncbi-tools++/algo/blast/format/data4xmlformat.hpp +include/ncbi-tools++/algo/blast/format/sam.hpp include/ncbi-tools++/algo/blast/format/vecscreen_run.hpp include/ncbi-tools++/algo/blast/igblast/igblast.hpp include/ncbi-tools++/algo/dustmask/sdust.tex @@ -211,6 +218,7 @@ include/ncbi-tools++/algo/winmask/seq_ma include/ncbi-tools++/algo/winmask/seq_masker_uset_hash.hpp include/ncbi-tools++/algo/winmask/seq_masker_uset_simple.hpp include/ncbi-tools++/algo/winmask/seq_masker_util.hpp +include/ncbi-tools++/algo/winmask/seq_masker_version.hpp include/ncbi-tools++/algo/winmask/seq_masker_window.hpp include/ncbi-tools++/algo/winmask/seq_masker_window_ambig.hpp include/ncbi-tools++/algo/winmask/seq_masker_window_pattern.hpp @@ -221,8 +229,6 @@ include/ncbi-tools++/algo/winmask/win_ma include/ncbi-tools++/algo/winmask/win_mask_gen_counts.hpp include/ncbi-tools++/algo/winmask/win_mask_util.hpp include/ncbi-tools++/cgi/caf.hpp -include/ncbi-tools++/cgi/caf_encoded.hpp -include/ncbi-tools++/cgi/caf_plain.hpp include/ncbi-tools++/cgi/cgi_exception.hpp include/ncbi-tools++/cgi/cgi_serial.hpp include/ncbi-tools++/cgi/cgi_session.hpp @@ -237,13 +243,15 @@ include/ncbi-tools++/cgi/ncbicgir.hpp include/ncbi-tools++/cgi/ncbires.hpp include/ncbi-tools++/cgi/ref_args.hpp include/ncbi-tools++/cgi/user_agent.hpp +include/ncbi-tools++/common/boost_skew_guard.hpp include/ncbi-tools++/common/config/ncbiconf_msvc.h -include/ncbi-tools++/common/config/ncbiconf_msvc_site.h include/ncbi-tools++/common/config/ncbiconf_universal.h include/ncbi-tools++/common/config/ncbiconf_xcode.h -include/ncbi-tools++/common/config/ncbiconf_xcode_site.h include/ncbi-tools++/common/header_template.hpp include/ncbi-tools++/common/metamodules_doxygen.h +include/ncbi-tools++/common/ncbi_build_ver.h +include/ncbi-tools++/common/ncbi_build_ver.h.in +include/ncbi-tools++/common/ncbi_build_ver.h.last include/ncbi-tools++/common/ncbi_export.h include/ncbi-tools++/common/ncbi_package_ver.h include/ncbi-tools++/common/ncbi_pch_impl.hpp @@ -256,12 +264,6 @@ include/ncbi-tools++/common/test_data_pa include/ncbi-tools++/connect/connect_export.h include/ncbi-tools++/connect/email_diag_handler.hpp include/ncbi-tools++/connect/error_codes.hpp -include/ncbi-tools++/connect/ext/ncbi_crypt.h -include/ncbi-tools++/connect/ext/ncbi_dblb.h -include/ncbi-tools++/connect/ext/ncbi_dblb_svcmapper.hpp -include/ncbi-tools++/connect/ext/ncbi_ifconf.h -include/ncbi-tools++/connect/ext/ncbi_iprange.h -include/ncbi-tools++/connect/ext/ncbi_localnet.h include/ncbi-tools++/connect/impl/server_connection.hpp include/ncbi-tools++/connect/impl/thread_pool_for_server.hpp include/ncbi-tools++/connect/ncbi_base64.h @@ -282,8 +284,10 @@ include/ncbi-tools++/connect/ncbi_heapmg include/ncbi-tools++/connect/ncbi_host_info.h include/ncbi-tools++/connect/ncbi_http_connector.h include/ncbi-tools++/connect/ncbi_http_session.hpp +include/ncbi-tools++/connect/ncbi_lbos.hpp include/ncbi-tools++/connect/ncbi_memory_connector.h include/ncbi-tools++/connect/ncbi_misc.hpp +include/ncbi-tools++/connect/ncbi_monkey.hpp include/ncbi-tools++/connect/ncbi_namedpipe.hpp include/ncbi-tools++/connect/ncbi_namedpipe_connector.hpp include/ncbi-tools++/connect/ncbi_pipe.hpp @@ -309,11 +313,14 @@ include/ncbi-tools++/connect/services/er include/ncbi-tools++/connect/services/grid_app_version_info.hpp include/ncbi-tools++/connect/services/grid_client.hpp include/ncbi-tools++/connect/services/grid_client_app.hpp -include/ncbi-tools++/connect/services/grid_control_thread.hpp include/ncbi-tools++/connect/services/grid_globals.hpp include/ncbi-tools++/connect/services/grid_rw_impl.hpp include/ncbi-tools++/connect/services/grid_worker.hpp include/ncbi-tools++/connect/services/grid_worker_app.hpp +include/ncbi-tools++/connect/services/impl/neticache_client_int.hpp +include/ncbi-tools++/connect/services/impl/netschedule_api_int.hpp +include/ncbi-tools++/connect/services/impl/netstorage_impl.hpp +include/ncbi-tools++/connect/services/impl/netstorage_int.hpp include/ncbi-tools++/connect/services/json_over_uttp.hpp include/ncbi-tools++/connect/services/named_parameters.hpp include/ncbi-tools++/connect/services/netcache_admin.hpp @@ -329,7 +336,7 @@ include/ncbi-tools++/connect/services/ne include/ncbi-tools++/connect/services/netservice_api_expt.hpp include/ncbi-tools++/connect/services/netservice_protocol_parser.hpp include/ncbi-tools++/connect/services/netstorage.hpp -include/ncbi-tools++/connect/services/netstorage_admin.hpp +include/ncbi-tools++/connect/services/netstorage_ft.hpp include/ncbi-tools++/connect/services/netstorage_impl.hpp include/ncbi-tools++/connect/services/ns_client_factory.hpp include/ncbi-tools++/connect/services/ns_job_serializer.hpp @@ -337,7 +344,6 @@ include/ncbi-tools++/connect/services/ns include/ncbi-tools++/connect/services/remote_app.hpp include/ncbi-tools++/connect/services/srv_connections.hpp include/ncbi-tools++/connect/services/srv_connections_expt.hpp -include/ncbi-tools++/connect/services/timeline.hpp include/ncbi-tools++/connect/services/util.hpp include/ncbi-tools++/connect/threaded_server.hpp include/ncbi-tools++/corelib/blob_storage.hpp @@ -355,10 +361,12 @@ include/ncbi-tools++/corelib/hash_impl/_ include/ncbi-tools++/corelib/hash_impl/stlp_defs.hpp include/ncbi-tools++/corelib/hash_map.hpp include/ncbi-tools++/corelib/hash_set.hpp +include/ncbi-tools++/corelib/impl/listener_stack.hpp include/ncbi-tools++/corelib/impl/ncbi_atomic_defs.h include/ncbi-tools++/corelib/impl/ncbi_dbsvcmapper.hpp include/ncbi-tools++/corelib/impl/ncbi_java.h include/ncbi-tools++/corelib/impl/ncbi_os_mswin.h +include/ncbi-tools++/corelib/impl/ncbi_panfs.h include/ncbi-tools++/corelib/impl/ncbi_param_impl.hpp include/ncbi-tools++/corelib/impl/ncbi_toolkit_impl.hpp include/ncbi-tools++/corelib/impl/ncbierror_impl.hpp @@ -377,6 +385,7 @@ include/ncbi-tools++/corelib/ncbi_cookie include/ncbi-tools++/corelib/ncbi_limits.h include/ncbi-tools++/corelib/ncbi_limits.hpp include/ncbi-tools++/corelib/ncbi_mask.hpp +include/ncbi-tools++/corelib/ncbi_message.hpp include/ncbi-tools++/corelib/ncbi_os_mswin.hpp include/ncbi-tools++/corelib/ncbi_os_unix.hpp include/ncbi-tools++/corelib/ncbi_param.hpp @@ -396,6 +405,7 @@ include/ncbi-tools++/corelib/ncbiatomic. include/ncbi-tools++/corelib/ncbiatomic.hpp include/ncbi-tools++/corelib/ncbicfg.h include/ncbi-tools++/corelib/ncbicntr.hpp +include/ncbi-tools++/corelib/ncbictype.hpp include/ncbi-tools++/corelib/ncbidbg.hpp include/ncbi-tools++/corelib/ncbidiag.hpp include/ncbi-tools++/corelib/ncbidiag.inl @@ -464,8 +474,10 @@ include/ncbi-tools++/dbapi/driver/odbc/u include/ncbi-tools++/dbapi/driver/odbc/unix_odbc/sql.h include/ncbi-tools++/dbapi/driver/odbc/unix_odbc/sqlext.h include/ncbi-tools++/dbapi/driver/odbc/unix_odbc/sqlfront.h +include/ncbi-tools++/dbapi/driver/odbc/unix_odbc/sqlspi.h include/ncbi-tools++/dbapi/driver/odbc/unix_odbc/sqltypes.h include/ncbi-tools++/dbapi/driver/odbc/unix_odbc/sqlucode.h +include/ncbi-tools++/dbapi/driver/odbc/unix_odbc/unixodbc_conf.h include/ncbi-tools++/dbapi/driver/public.hpp include/ncbi-tools++/dbapi/driver/types.hpp include/ncbi-tools++/dbapi/driver/util/blobstore.hpp @@ -492,6 +504,7 @@ include/ncbi-tools++/html/page.hpp include/ncbi-tools++/html/pager.hpp include/ncbi-tools++/html/selection.hpp include/ncbi-tools++/html/writer_htmlenc.hpp +include/ncbi-tools++/misc/error_codes.hpp include/ncbi-tools++/ncbi_pch.hpp include/ncbi-tools++/ncbi_source_ver.h include/ncbi-tools++/ncbiconf.h @@ -585,16 +598,6 @@ include/ncbi-tools++/objects/biotree/Nod include/ncbi-tools++/objects/biotree/biotree__.hpp include/ncbi-tools++/objects/blast/.cvsignore include/ncbi-tools++/objects/blast/.cvsignore.extra -include/ncbi-tools++/objects/blast/Bla_com_opt_db_res_by_orga.hpp -include/ncbi-tools++/objects/blast/Bla_com_opt_db_res_by_orga_.hpp -include/ncbi-tools++/objects/blast/Blas_comm_opti_disco_megab.hpp -include/ncbi-tools++/objects/blast/Blas_comm_opti_disco_megab_.hpp -include/ncbi-tools++/objects/blast/Blas_comm_opti_nucle_query.hpp -include/ncbi-tools++/objects/blast/Blas_comm_opti_nucle_query_.hpp -include/ncbi-tools++/objects/blast/Blas_comm_opti_query_filte.hpp -include/ncbi-tools++/objects/blast/Blas_comm_opti_query_filte_.hpp -include/ncbi-tools++/objects/blast/Blas_comm_opti_repea_filte.hpp -include/ncbi-tools++/objects/blast/Blas_comm_opti_repea_filte_.hpp include/ncbi-tools++/objects/blast/Blas_get_searc_resul_reply.hpp include/ncbi-tools++/objects/blast/Blas_get_searc_resul_reply_.hpp include/ncbi-tools++/objects/blast/Blas_get_searc_resul_reque.hpp @@ -609,14 +612,10 @@ include/ncbi-tools++/objects/blast/Blas_ include/ncbi-tools++/objects/blast/Blas_get_searc_strat_reque_.hpp include/ncbi-tools++/objects/blast/Blas_get_windo_taxid_reply.hpp include/ncbi-tools++/objects/blast/Blas_get_windo_taxid_reply_.hpp -include/ncbi-tools++/objects/blast/Blas_queu_searc_reque_lite.hpp -include/ncbi-tools++/objects/blast/Blas_queu_searc_reque_lite_.hpp include/ncbi-tools++/objects/blast/Blast4_alignment_for_query.hpp include/ncbi-tools++/objects/blast/Blast4_alignment_for_query_.hpp include/ncbi-tools++/objects/blast/Blast4_archive.hpp include/ncbi-tools++/objects/blast/Blast4_archive_.hpp -include/ncbi-tools++/objects/blast/Blast4_common_options.hpp -include/ncbi-tools++/objects/blast/Blast4_common_options_.hpp include/ncbi-tools++/objects/blast/Blast4_cutoff.hpp include/ncbi-tools++/objects/blast/Blast4_cutoff_.hpp include/ncbi-tools++/objects/blast/Blast4_database.hpp @@ -659,8 +658,6 @@ include/ncbi-tools++/objects/blast/Blast include/ncbi-tools++/objects/blast/Blast4_mask_.hpp include/ncbi-tools++/objects/blast/Blast4_matrix_id.hpp include/ncbi-tools++/objects/blast/Blast4_matrix_id_.hpp -include/ncbi-tools++/objects/blast/Blast4_options_lite.hpp -include/ncbi-tools++/objects/blast/Blast4_options_lite_.hpp include/ncbi-tools++/objects/blast/Blast4_parameter.hpp include/ncbi-tools++/objects/blast/Blast4_parameter_.hpp include/ncbi-tools++/objects/blast/Blast4_parameter_info.hpp @@ -707,10 +704,6 @@ include/ncbi-tools++/objects/blast/Blast include/ncbi-tools++/objects/blast/Blast4_task_info_.hpp include/ncbi-tools++/objects/blast/Blast4_value.hpp include/ncbi-tools++/objects/blast/Blast4_value_.hpp -include/ncbi-tools++/objects/blast/Blast_commo_optio_db_restr.hpp -include/ncbi-tools++/objects/blast/Blast_commo_optio_db_restr_.hpp -include/ncbi-tools++/objects/blast/Blast_common_option_scorin.hpp -include/ncbi-tools++/objects/blast/Blast_common_option_scorin_.hpp include/ncbi-tools++/objects/blast/Blast_finish_params_reques.hpp include/ncbi-tools++/objects/blast/Blast_finish_params_reques_.hpp include/ncbi-tools++/objects/blast/Blast_get_databa_ex_reques.hpp @@ -763,8 +756,11 @@ include/ncbi-tools++/objects/blastxml/Pa include/ncbi-tools++/objects/blastxml/Statistics.hpp include/ncbi-tools++/objects/blastxml/Statistics_.hpp include/ncbi-tools++/objects/blastxml/blastxml__.hpp -include/ncbi-tools++/objects/blastxml2/BlastOutput.hpp -include/ncbi-tools++/objects/blastxml2/BlastOutput_.hpp +include/ncbi-tools++/objects/blastxml2/.cvsignore +include/ncbi-tools++/objects/blastxml2/BlastOutput2.hpp +include/ncbi-tools++/objects/blastxml2/BlastOutput2_.hpp +include/ncbi-tools++/objects/blastxml2/BlastXML2.hpp +include/ncbi-tools++/objects/blastxml2/BlastXML2_.hpp include/ncbi-tools++/objects/blastxml2/Err.hpp include/ncbi-tools++/objects/blastxml2/Err_.hpp include/ncbi-tools++/objects/blastxml2/Hit.hpp @@ -775,7 +771,7 @@ include/ncbi-tools++/objects/blastxml2/H include/ncbi-tools++/objects/blastxml2/Hsp_.hpp include/ncbi-tools++/objects/blastxml2/Iteration.hpp include/ncbi-tools++/objects/blastxml2/Iteration_.hpp -include/ncbi-tools++/objects/blastxml2/NCBI_BlastOutput_module.hpp +include/ncbi-tools++/objects/blastxml2/NCBI_BlastOutput2_module.hpp include/ncbi-tools++/objects/blastxml2/Parameters.hpp include/ncbi-tools++/objects/blastxml2/Parameters_.hpp include/ncbi-tools++/objects/blastxml2/Range.hpp @@ -1160,12 +1156,16 @@ include/ncbi-tools++/objects/genomecoll/ include/ncbi-tools++/objects/genomecoll/GCClientRequest_.hpp include/ncbi-tools++/objects/genomecoll/GCClientResponse.hpp include/ncbi-tools++/objects/genomecoll/GCClientResponse_.hpp +include/ncbi-tools++/objects/genomecoll/GCClient_AssembliesForSequ.hpp +include/ncbi-tools++/objects/genomecoll/GCClient_AssembliesForSequ_.hpp include/ncbi-tools++/objects/genomecoll/GCClient_AssemblyInfo.hpp include/ncbi-tools++/objects/genomecoll/GCClient_AssemblyInfo_.hpp +include/ncbi-tools++/objects/genomecoll/GCClient_AssemblySequenceI.hpp +include/ncbi-tools++/objects/genomecoll/GCClient_AssemblySequenceI_.hpp include/ncbi-tools++/objects/genomecoll/GCClient_AttributeFlags.hpp include/ncbi-tools++/objects/genomecoll/GCClient_AttributeFlags_.hpp -include/ncbi-tools++/objects/genomecoll/GCClient_BestAssembly.hpp -include/ncbi-tools++/objects/genomecoll/GCClient_BestAssembly_.hpp +include/ncbi-tools++/objects/genomecoll/GCClient_EquivalentAssembl.hpp +include/ncbi-tools++/objects/genomecoll/GCClient_EquivalentAssembl_.hpp include/ncbi-tools++/objects/genomecoll/GCClient_Error.hpp include/ncbi-tools++/objects/genomecoll/GCClient_Error_.hpp include/ncbi-tools++/objects/genomecoll/GCClient_FindBestAssemblyF.hpp @@ -1174,10 +1174,14 @@ include/ncbi-tools++/objects/genomecoll/ include/ncbi-tools++/objects/genomecoll/GCClient_FindBestAssemblyR_.hpp include/ncbi-tools++/objects/genomecoll/GCClient_FindBestAssemblyS.hpp include/ncbi-tools++/objects/genomecoll/GCClient_FindBestAssemblyS_.hpp +include/ncbi-tools++/objects/genomecoll/GCClient_GetAssemblyBlobRe.hpp +include/ncbi-tools++/objects/genomecoll/GCClient_GetAssemblyBlobRe_.hpp +include/ncbi-tools++/objects/genomecoll/GCClient_GetAssemblyBySequ.hpp +include/ncbi-tools++/objects/genomecoll/GCClient_GetAssemblyBySequ_.hpp include/ncbi-tools++/objects/genomecoll/GCClient_GetAssemblyReques.hpp include/ncbi-tools++/objects/genomecoll/GCClient_GetAssemblyReques_.hpp -include/ncbi-tools++/objects/genomecoll/GCClient_SeqIdAssemblyInfo.hpp -include/ncbi-tools++/objects/genomecoll/GCClient_SeqIdAssemblyInfo_.hpp +include/ncbi-tools++/objects/genomecoll/GCClient_GetEquivalentAsse.hpp +include/ncbi-tools++/objects/genomecoll/GCClient_GetEquivalentAsse_.hpp include/ncbi-tools++/objects/genomecoll/GCClient_ValidateChrTypeLo.hpp include/ncbi-tools++/objects/genomecoll/GCClient_ValidateChrTypeLo_.hpp include/ncbi-tools++/objects/genomecoll/GC_Assemblies.hpp @@ -1220,6 +1224,7 @@ include/ncbi-tools++/objects/genomecoll/ include/ncbi-tools++/objects/genomecoll/GC_TypedSeqId_.hpp include/ncbi-tools++/objects/genomecoll/NCBI_GencollClient_module.hpp include/ncbi-tools++/objects/genomecoll/NCBI_GenomeCollection_module.hpp +include/ncbi-tools++/objects/genomecoll/cached_assembly.hpp include/ncbi-tools++/objects/genomecoll/gencoll_client__.hpp include/ncbi-tools++/objects/genomecoll/genome_collection__.hpp include/ncbi-tools++/objects/genomecoll/genomic_collections_cli.hpp @@ -1334,6 +1339,8 @@ include/ncbi-tools++/objects/id2/NCBI_ID include/ncbi-tools++/objects/id2/id2__.hpp include/ncbi-tools++/objects/id2/id2_client.hpp include/ncbi-tools++/objects/id2/id2_client_.hpp +include/ncbi-tools++/objects/id2/id2processor.hpp +include/ncbi-tools++/objects/id2/id2processor_interface.hpp include/ncbi-tools++/objects/insdseq/.cvsignore include/ncbi-tools++/objects/insdseq/INSDAltSeqData.hpp include/ncbi-tools++/objects/insdseq/INSDAltSeqData_.hpp @@ -2866,6 +2873,8 @@ include/ncbi-tools++/objects/taxon3/Taxo include/ncbi-tools++/objects/taxon3/Taxon3_reply_.hpp include/ncbi-tools++/objects/taxon3/Taxon3_request.hpp include/ncbi-tools++/objects/taxon3/Taxon3_request_.hpp +include/ncbi-tools++/objects/taxon3/cached_taxon3.hpp +include/ncbi-tools++/objects/taxon3/itaxon3.hpp include/ncbi-tools++/objects/taxon3/taxon3.hpp include/ncbi-tools++/objects/taxon3/taxon3__.hpp include/ncbi-tools++/objects/tinyseq/.cvsignore @@ -2907,6 +2916,10 @@ include/ncbi-tools++/objects/trackmgr/TM include/ncbi-tools++/objects/trackmgr/TMgr_BlastRIDRequest_.hpp include/ncbi-tools++/objects/trackmgr/TMgr_ClientInfo.hpp include/ncbi-tools++/objects/trackmgr/TMgr_ClientInfo_.hpp +include/ncbi-tools++/objects/trackmgr/TMgr_CreateTracksetReply.hpp +include/ncbi-tools++/objects/trackmgr/TMgr_CreateTracksetReply_.hpp +include/ncbi-tools++/objects/trackmgr/TMgr_CreateTracksetRequest.hpp +include/ncbi-tools++/objects/trackmgr/TMgr_CreateTracksetRequest_.hpp include/ncbi-tools++/objects/trackmgr/TMgr_CreateUserDataItem.hpp include/ncbi-tools++/objects/trackmgr/TMgr_CreateUserDataItem_.hpp include/ncbi-tools++/objects/trackmgr/TMgr_CreateUserTrackReply.hpp @@ -2951,10 +2964,20 @@ include/ncbi-tools++/objects/trackmgr/TM include/ncbi-tools++/objects/trackmgr/TMgr_RemoveUserTrackReply_.hpp include/ncbi-tools++/objects/trackmgr/TMgr_RemoveUserTrackReques.hpp include/ncbi-tools++/objects/trackmgr/TMgr_RemoveUserTrackReques_.hpp +include/ncbi-tools++/objects/trackmgr/TMgr_RenameMyNCBICollectio.hpp +include/ncbi-tools++/objects/trackmgr/TMgr_RenameMyNCBICollectio_.hpp include/ncbi-tools++/objects/trackmgr/TMgr_Reply.hpp include/ncbi-tools++/objects/trackmgr/TMgr_Reply_.hpp include/ncbi-tools++/objects/trackmgr/TMgr_Request.hpp include/ncbi-tools++/objects/trackmgr/TMgr_Request_.hpp +include/ncbi-tools++/objects/trackmgr/TMgr_RetrieveTracksetReply.hpp +include/ncbi-tools++/objects/trackmgr/TMgr_RetrieveTracksetReply_.hpp +include/ncbi-tools++/objects/trackmgr/TMgr_RetrieveTracksetReque.hpp +include/ncbi-tools++/objects/trackmgr/TMgr_RetrieveTracksetReque_.hpp +include/ncbi-tools++/objects/trackmgr/TMgr_Status.hpp +include/ncbi-tools++/objects/trackmgr/TMgr_Status_.hpp +include/ncbi-tools++/objects/trackmgr/TMgr_SupportedAssembliesRe.hpp +include/ncbi-tools++/objects/trackmgr/TMgr_SupportedAssembliesRe_.hpp include/ncbi-tools++/objects/trackmgr/TMgr_SwitchTrackContextRep.hpp include/ncbi-tools++/objects/trackmgr/TMgr_SwitchTrackContextRep_.hpp include/ncbi-tools++/objects/trackmgr/TMgr_SwitchTrackContextReq.hpp @@ -2975,22 +2998,29 @@ include/ncbi-tools++/objects/trackmgr/TM include/ncbi-tools++/objects/trackmgr/TMgr_TrackAttributes_.hpp include/ncbi-tools++/objects/trackmgr/TMgr_TrackItems.hpp include/ncbi-tools++/objects/trackmgr/TMgr_TrackItems_.hpp +include/ncbi-tools++/objects/trackmgr/TMgr_TrackSet.hpp +include/ncbi-tools++/objects/trackmgr/TMgr_TrackSetType.hpp +include/ncbi-tools++/objects/trackmgr/TMgr_TrackSetType_.hpp +include/ncbi-tools++/objects/trackmgr/TMgr_TrackSet_.hpp include/ncbi-tools++/objects/trackmgr/TMgr_TypeStat.hpp include/ncbi-tools++/objects/trackmgr/TMgr_TypeStat_.hpp include/ncbi-tools++/objects/trackmgr/TMgr_ValueRequest.hpp include/ncbi-tools++/objects/trackmgr/TMgr_ValueRequest_.hpp include/ncbi-tools++/objects/trackmgr/blast_client.hpp +include/ncbi-tools++/objects/trackmgr/createtrackset_client.hpp include/ncbi-tools++/objects/trackmgr/createusertrack_client.hpp include/ncbi-tools++/objects/trackmgr/displaytrack_client.hpp include/ncbi-tools++/objects/trackmgr/gridrpcclient.hpp include/ncbi-tools++/objects/trackmgr/item_resolver_client.hpp include/ncbi-tools++/objects/trackmgr/removeusertrack_client.hpp +include/ncbi-tools++/objects/trackmgr/supported_assemblies_client.hpp include/ncbi-tools++/objects/trackmgr/switch_context_client.hpp include/ncbi-tools++/objects/trackmgr/track_attrvalue_client.hpp include/ncbi-tools++/objects/trackmgr/trackmgr__.hpp include/ncbi-tools++/objects/trackmgr/trackmgr_client.hpp include/ncbi-tools++/objects/trackmgr/trackmgr_client_.hpp include/ncbi-tools++/objects/trackmgr/trackmgr_export.h +include/ncbi-tools++/objects/trackmgr/trackset_client.hpp include/ncbi-tools++/objects/valerr/.cvsignore include/ncbi-tools++/objects/valerr/NCBI_ValErrors_module.hpp include/ncbi-tools++/objects/valerr/ValidErrItem.hpp @@ -3028,6 +3058,77 @@ include/ncbi-tools++/objects/variation/V include/ncbi-tools++/objects/variation/VariationMethod_.hpp include/ncbi-tools++/objects/variation/Variation_.hpp include/ncbi-tools++/objects/variation/variation__.hpp +include/ncbi-tools++/objects/varrep/.cvsignore +include/ncbi-tools++/objects/varrep/AaInterval.hpp +include/ncbi-tools++/objects/varrep/AaInterval_.hpp +include/ncbi-tools++/objects/varrep/AaLocation.hpp +include/ncbi-tools++/objects/varrep/AaLocation_.hpp +include/ncbi-tools++/objects/varrep/AaSite.hpp +include/ncbi-tools++/objects/varrep/AaSiteRange.hpp +include/ncbi-tools++/objects/varrep/AaSiteRange_.hpp +include/ncbi-tools++/objects/varrep/AaSite_.hpp +include/ncbi-tools++/objects/varrep/Conversion.hpp +include/ncbi-tools++/objects/varrep/Conversion_.hpp +include/ncbi-tools++/objects/varrep/Count.hpp +include/ncbi-tools++/objects/varrep/Count_.hpp +include/ncbi-tools++/objects/varrep/CtermExtension.hpp +include/ncbi-tools++/objects/varrep/CtermExtension_.hpp +include/ncbi-tools++/objects/varrep/Deletion.hpp +include/ncbi-tools++/objects/varrep/Deletion_.hpp +include/ncbi-tools++/objects/varrep/Delins.hpp +include/ncbi-tools++/objects/varrep/Delins_.hpp +include/ncbi-tools++/objects/varrep/Duplication.hpp +include/ncbi-tools++/objects/varrep/Duplication_.hpp +include/ncbi-tools++/objects/varrep/Frameshift.hpp +include/ncbi-tools++/objects/varrep/Frameshift_.hpp +include/ncbi-tools++/objects/varrep/Insertion.hpp +include/ncbi-tools++/objects/varrep/Insertion_.hpp +include/ncbi-tools++/objects/varrep/Inversion.hpp +include/ncbi-tools++/objects/varrep/Inversion_.hpp +include/ncbi-tools++/objects/varrep/NCBI_VariationIRep_module.hpp +include/ncbi-tools++/objects/varrep/NaIdentity.hpp +include/ncbi-tools++/objects/varrep/NaIdentity_.hpp +include/ncbi-tools++/objects/varrep/NaSub.hpp +include/ncbi-tools++/objects/varrep/NaSub_.hpp +include/ncbi-tools++/objects/varrep/NtIntLimit.hpp +include/ncbi-tools++/objects/varrep/NtIntLimit_.hpp +include/ncbi-tools++/objects/varrep/NtInterval.hpp +include/ncbi-tools++/objects/varrep/NtInterval_.hpp +include/ncbi-tools++/objects/varrep/NtLocation.hpp +include/ncbi-tools++/objects/varrep/NtLocation_.hpp +include/ncbi-tools++/objects/varrep/NtSite.hpp +include/ncbi-tools++/objects/varrep/NtSiteRange.hpp +include/ncbi-tools++/objects/varrep/NtSiteRange_.hpp +include/ncbi-tools++/objects/varrep/NtSite_.hpp +include/ncbi-tools++/objects/varrep/NtermExtension.hpp +include/ncbi-tools++/objects/varrep/NtermExtension_.hpp +include/ncbi-tools++/objects/varrep/ProteinExtension.hpp +include/ncbi-tools++/objects/varrep/ProteinExtension_.hpp +include/ncbi-tools++/objects/varrep/ProteinSub.hpp +include/ncbi-tools++/objects/varrep/ProteinSub_.hpp +include/ncbi-tools++/objects/varrep/Repeat.hpp +include/ncbi-tools++/objects/varrep/Repeat_.hpp +include/ncbi-tools++/objects/varrep/SeqInterval.hpp +include/ncbi-tools++/objects/varrep/SeqInterval_.hpp +include/ncbi-tools++/objects/varrep/SeqLocation.hpp +include/ncbi-tools++/objects/varrep/SeqLocation_.hpp +include/ncbi-tools++/objects/varrep/SequenceVariant.hpp +include/ncbi-tools++/objects/varrep/SequenceVariant_.hpp +include/ncbi-tools++/objects/varrep/SimpleVariant.hpp +include/ncbi-tools++/objects/varrep/SimpleVariantSeq.hpp +include/ncbi-tools++/objects/varrep/SimpleVariantSeq_.hpp +include/ncbi-tools++/objects/varrep/SimpleVariant_.hpp +include/ncbi-tools++/objects/varrep/SpecialVariant.hpp +include/ncbi-tools++/objects/varrep/SpecialVariant_.hpp +include/ncbi-tools++/objects/varrep/Subsequence.hpp +include/ncbi-tools++/objects/varrep/Subsequence_.hpp +include/ncbi-tools++/objects/varrep/Variant.hpp +include/ncbi-tools++/objects/varrep/VariantExpression.hpp +include/ncbi-tools++/objects/varrep/VariantExpression_.hpp +include/ncbi-tools++/objects/varrep/VariantSeqType.hpp +include/ncbi-tools++/objects/varrep/VariantSeqType_.hpp +include/ncbi-tools++/objects/varrep/Variant_.hpp +include/ncbi-tools++/objects/varrep/varrep__.hpp include/ncbi-tools++/objmgr/align_ci.hpp include/ncbi-tools++/objmgr/annot_ci.hpp include/ncbi-tools++/objmgr/annot_name.hpp @@ -3075,6 +3176,7 @@ include/ncbi-tools++/objmgr/impl/seq_ann include/ncbi-tools++/objmgr/impl/seq_annot_info.hpp include/ncbi-tools++/objmgr/impl/seq_entry_edit_commands.hpp include/ncbi-tools++/objmgr/impl/seq_entry_info.hpp +include/ncbi-tools++/objmgr/impl/seq_id_sort.hpp include/ncbi-tools++/objmgr/impl/seq_loc_cvt.hpp include/ncbi-tools++/objmgr/impl/seq_table_info.hpp include/ncbi-tools++/objmgr/impl/seq_table_setter.hpp @@ -3084,6 +3186,7 @@ include/ncbi-tools++/objmgr/impl/seq_vec include/ncbi-tools++/objmgr/impl/seq_vector_cvt_gen.hpp include/ncbi-tools++/objmgr/impl/snp_annot_info.hpp include/ncbi-tools++/objmgr/impl/snp_info.hpp +include/ncbi-tools++/objmgr/impl/split_parser.hpp include/ncbi-tools++/objmgr/impl/synonyms.hpp include/ncbi-tools++/objmgr/impl/tse_assigner.hpp include/ncbi-tools++/objmgr/impl/tse_chunk_info.hpp @@ -3137,6 +3240,7 @@ include/ncbi-tools++/objmgr/unsupp_edits include/ncbi-tools++/objmgr/util/create_defline.hpp include/ncbi-tools++/objmgr/util/feature.hpp include/ncbi-tools++/objmgr/util/obj_sniff.hpp +include/ncbi-tools++/objmgr/util/objutil.hpp include/ncbi-tools++/objmgr/util/seq_align_util.hpp include/ncbi-tools++/objmgr/util/seq_loc_util.hpp include/ncbi-tools++/objmgr/util/sequence.hpp @@ -3149,6 +3253,7 @@ include/ncbi-tools++/objtools/align_form include/ncbi-tools++/objtools/align_format/showalign.hpp include/ncbi-tools++/objtools/align_format/showdefline.hpp include/ncbi-tools++/objtools/align_format/tabular.hpp +include/ncbi-tools++/objtools/align_format/taxFormat.hpp include/ncbi-tools++/objtools/align_format/vectorscreen.hpp include/ncbi-tools++/objtools/alnmgr/aln_asn_reader.hpp include/ncbi-tools++/objtools/alnmgr/aln_builders.hpp @@ -3247,15 +3352,8 @@ include/ncbi-tools++/objtools/data_loade include/ncbi-tools++/objtools/data_loaders/genbank/impl/reader_id2_base.hpp include/ncbi-tools++/objtools/data_loaders/genbank/impl/reader_service.hpp include/ncbi-tools++/objtools/data_loaders/genbank/impl/request_result.hpp -include/ncbi-tools++/objtools/data_loaders/genbank/impl/split_parser.hpp include/ncbi-tools++/objtools/data_loaders/genbank/impl/standalone_result.hpp include/ncbi-tools++/objtools/data_loaders/genbank/impl/statistics.hpp -include/ncbi-tools++/objtools/data_loaders/genbank/pubseq/reader_pubseq.hpp -include/ncbi-tools++/objtools/data_loaders/genbank/pubseq/reader_pubseq_entry.hpp -include/ncbi-tools++/objtools/data_loaders/genbank/pubseq/reader_pubseq_params.h -include/ncbi-tools++/objtools/data_loaders/genbank/pubseq2/reader_pubseq2.hpp -include/ncbi-tools++/objtools/data_loaders/genbank/pubseq2/reader_pubseq2_entry.hpp -include/ncbi-tools++/objtools/data_loaders/genbank/pubseq2/reader_pubseq2_params.h include/ncbi-tools++/objtools/data_loaders/genbank/reader.hpp include/ncbi-tools++/objtools/data_loaders/genbank/reader_interface.hpp include/ncbi-tools++/objtools/data_loaders/genbank/reader_params.h @@ -3272,11 +3370,13 @@ include/ncbi-tools++/objtools/data_loade include/ncbi-tools++/objtools/data_loaders/genbank/writer.hpp include/ncbi-tools++/objtools/data_loaders/genbank/writer_interface.hpp include/ncbi-tools++/objtools/data_loaders/loaders.hpp +include/ncbi-tools++/objtools/edit/apply_object.hpp include/ncbi-tools++/objtools/edit/autodef.hpp include/ncbi-tools++/objtools/edit/autodef_available_modifier.hpp include/ncbi-tools++/objtools/edit/autodef_feature_clause.hpp include/ncbi-tools++/objtools/edit/autodef_feature_clause_base.hpp include/ncbi-tools++/objtools/edit/autodef_mod_combo.hpp +include/ncbi-tools++/objtools/edit/autodef_options.hpp include/ncbi-tools++/objtools/edit/autodef_source_desc.hpp include/ncbi-tools++/objtools/edit/autodef_source_group.hpp include/ncbi-tools++/objtools/edit/capitalization_string.hpp @@ -3291,9 +3391,14 @@ include/ncbi-tools++/objtools/edit/gene_ include/ncbi-tools++/objtools/edit/link_cds_mrna.hpp include/ncbi-tools++/objtools/edit/loc_edit.hpp include/ncbi-tools++/objtools/edit/mail_report.hpp +include/ncbi-tools++/objtools/edit/parse_text_options.hpp include/ncbi-tools++/objtools/edit/promote.hpp +include/ncbi-tools++/objtools/edit/publication_edit.hpp +include/ncbi-tools++/objtools/edit/remote_updater.hpp +include/ncbi-tools++/objtools/edit/rna_edit.hpp include/ncbi-tools++/objtools/edit/seq_entry_edit.hpp include/ncbi-tools++/objtools/edit/seqid_guesser.hpp +include/ncbi-tools++/objtools/edit/source_edit.hpp include/ncbi-tools++/objtools/edit/string_constraint.hpp include/ncbi-tools++/objtools/edit/struc_comm_field.hpp include/ncbi-tools++/objtools/edit/text_desc_field.hpp @@ -3391,6 +3496,7 @@ include/ncbi-tools++/objtools/readers/rm include/ncbi-tools++/objtools/readers/source_mod_parser.hpp include/ncbi-tools++/objtools/readers/source_mod_parser_wrapper.hpp include/ncbi-tools++/objtools/readers/table_filter.hpp +include/ncbi-tools++/objtools/readers/track_data.hpp include/ncbi-tools++/objtools/readers/ucscregion_reader.hpp include/ncbi-tools++/objtools/readers/vcf_reader.hpp include/ncbi-tools++/objtools/readers/wiggle_reader.hpp @@ -3488,6 +3594,7 @@ include/ncbi-tools++/serial/objostrjson. include/ncbi-tools++/serial/objostrxml.hpp include/ncbi-tools++/serial/pack_string.hpp include/ncbi-tools++/serial/rpcbase.hpp +include/ncbi-tools++/serial/rpcbase_impl.hpp include/ncbi-tools++/serial/serial.hpp include/ncbi-tools++/serial/serialasn.hpp include/ncbi-tools++/serial/serialbase.hpp @@ -3558,6 +3665,7 @@ include/ncbi-tools++/util/dictionary.hpp include/ncbi-tools++/util/dictionary_util.hpp include/ncbi-tools++/util/distribution.hpp include/ncbi-tools++/util/error_codes.hpp +include/ncbi-tools++/util/file_manifest.hpp include/ncbi-tools++/util/file_obsolete.hpp include/ncbi-tools++/util/floating_point.hpp include/ncbi-tools++/util/format_guess.hpp @@ -3588,6 +3696,7 @@ include/ncbi-tools++/util/ncbi_url.hpp include/ncbi-tools++/util/random_gen.hpp include/ncbi-tools++/util/range.hpp include/ncbi-tools++/util/range_coll.hpp +include/ncbi-tools++/util/rangelist.hpp include/ncbi-tools++/util/rangemap.hpp include/ncbi-tools++/util/rangemap.inl include/ncbi-tools++/util/reader_writer.hpp @@ -3599,6 +3708,7 @@ include/ncbi-tools++/util/regexp/pcrepos include/ncbi-tools++/util/request_control.hpp include/ncbi-tools++/util/resize_iter.hpp include/ncbi-tools++/util/resource_pool.hpp +include/ncbi-tools++/util/retry_ctx.hpp include/ncbi-tools++/util/scheduler.hpp include/ncbi-tools++/util/sequtil/sequtil.hpp include/ncbi-tools++/util/sequtil/sequtil_convert.hpp @@ -3611,6 +3721,7 @@ include/ncbi-tools++/util/static_map.hpp include/ncbi-tools++/util/static_set.hpp include/ncbi-tools++/util/strbuffer.hpp include/ncbi-tools++/util/strbuffer.inl +include/ncbi-tools++/util/stream_source.hpp include/ncbi-tools++/util/strsearch.hpp include/ncbi-tools++/util/sync_queue.hpp include/ncbi-tools++/util/table_printer.hpp @@ -3622,6 +3733,7 @@ include/ncbi-tools++/util/thread_pool.hp include/ncbi-tools++/util/thread_pool_ctrl.hpp include/ncbi-tools++/util/thread_pool_old.hpp include/ncbi-tools++/util/time_line.hpp +include/ncbi-tools++/util/timsort.hpp include/ncbi-tools++/util/transmissionrw.hpp include/ncbi-tools++/util/unicode.hpp include/ncbi-tools++/util/utf8.hpp @@ -3635,6 +3747,7 @@ include/ncbi-tools++/util/weakmap.inl include/ncbi-tools++/util/xregexp/arg_regexp.hpp include/ncbi-tools++/util/xregexp/mask_regexp.hpp include/ncbi-tools++/util/xregexp/regexp.hpp +include/ncbi-tools++/util/xregexp/regexp_template_tester.hpp lib/libaccess-static.a lib/libaccess.a lib/libalign_format-static.a @@ -3667,8 +3780,6 @@ lib/libcomposition_adjustment-static.a lib/libcomposition_adjustment.a lib/libconnect-static.a lib/libconnect.a -lib/libconnext-static.a -lib/libconnext.a lib/libconnssl-static.a lib/libconnssl.a lib/libcreaders-static.a @@ -3820,14 +3931,14 @@ lib/libtrackmgr-static.a lib/libtrackmgr.a lib/libtrackmgrcli-static.a lib/libtrackmgrcli.a -lib/libtrackmgrgridcli-static.a -lib/libtrackmgrgridcli.a lib/libvalerr-static.a lib/libvalerr.a lib/libvalid-static.a lib/libvalid.a lib/libvariation-static.a lib/libvariation.a +lib/libvarrep-static.a +lib/libvarrep.a lib/libwritedb-static.a lib/libwritedb.a lib/libxalgoblastdbindex-static.a @@ -3852,8 +3963,6 @@ lib/libxcompress-static.a lib/libxcompress.a lib/libxconnect-static.a lib/libxconnect.a -lib/libxconnext-static.a -lib/libxconnext.a lib/libxconnserv-static.a lib/libxconnserv.a lib/libxcser-static.a @@ -3884,6 +3993,8 @@ lib/libxobjutil-static.a lib/libxobjutil.a lib/libxregexp-static.a lib/libxregexp.a +lib/libxregexp_template_tester-static.a +lib/libxregexp_template_tester.a lib/libxser-static.a lib/libxser.a lib/libxthrserv-static.a
Want to link to this message? Use this URL: <https://mail-archive.FreeBSD.org/cgi/mid.cgi?201612190326.uBJ3Qsp0033983>