Date: Sun, 29 Sep 2013 06:37:40 GMT From: Max Sterling <maxclsb@gmail.com> To: freebsd-gnats-submit@FreeBSD.org Subject: ports/182482: [patch] Update science/jmol to 13.2.3 Message-ID: <201309290637.r8T6behU054841@oldred.freebsd.org> Resent-Message-ID: <201309290640.r8T6e0GU034756@freefall.freebsd.org>
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>Number: 182482
>Category: ports
>Synopsis: [patch] Update science/jmol to 13.2.3
>Confidential: no
>Severity: non-critical
>Priority: low
>Responsible: freebsd-ports-bugs
>State: open
>Quarter:
>Keywords:
>Date-Required:
>Class: update
>Submitter-Id: current-users
>Arrival-Date: Sun Sep 29 06:40:00 UTC 2013
>Closed-Date:
>Last-Modified:
>Originator: Max Sterling
>Release: 9.1
>Organization:
>Environment:
FreeBSD marvin 9.1-STABLE FreeBSD 9.1-STABLE #0 r246344: Tue Feb 5 00:46:08 MST 2013 root@marvin:/usr/obj/usr/src/sys/GENERIC amd64
>Description:
Update science/jmol to 13.2.3
>How-To-Repeat:
>Fix:
Patch attached with submission follows:
Index: Makefile
===================================================================
--- Makefile (revision 328648)
+++ Makefile (working copy)
@@ -2,9 +2,9 @@
# $FreeBSD$
PORTNAME= jmol
-PORTVERSION= 12.2.23
+PORTVERSION= 13.2.3
CATEGORIES= science java
-MASTER_SITES= SF/${PORTNAME}/Jmol/Version%2012.2/Version%20${PORTVERSION}:source1 \
+MASTER_SITES= SF/${PORTNAME}/Jmol/Version%2013.2/Version%20${PORTVERSION}:source1 \
http://jmol.svn.sourceforge.net/viewvc/jmol/trunk/Jmol/selfSignedCertificate/:source2
DISTFILES= Jmol-${PORTVERSION}-full.tar.gz:source1 \
selfSignedCertificate.cer:source2 \
@@ -15,20 +15,12 @@
COMMENT= An Open-Source Java Viewer for Chemical Structures in 3D
USE_JAVA= yes
-JAVA_VERSION= 1.6+
+JAVA_VERSION= 1.7+
WRKSRC= ${WRKDIR}/${PORTNAME}-${PORTVERSION}
-JMOL_FILES= Jmol.jar JmolApplet.jar JmolApplet0.jar \
- JmolApplet0_Console.jar \
- JmolApplet0_Minimize.jar \
- JmolApplet0_Popup.jar \
- JmolApplet0_ReadersCifPdb.jar JmolApplet0_ReadersMolXyz.jar \
- JmolApplet0_ReadersMore.jar JmolApplet0_ReadersXml.jar \
- JmolApplet0_ShapeBio.jar JmolApplet0_ShapeSpecial.jar \
- JmolApplet0_ShapeSurface.jar \
- JmolApplet0_Smiles.jar JmolApplet0_Symmetry.jar \
- JmolData.jar
+JMOL_FILES= Jmol.jar \
+ JmolData.jar \
+ JmolLib.jar
-JMOL_FILES_EXT= Jmol.js
SIGN_DIR= ${WRKSRC}/selfSignedCertificate
.if !defined(WITHOUT_COMPILE)
@@ -57,20 +49,15 @@
@${CP} ${DISTDIR}/selfSignedCertificate.store ${SIGN_DIR}
do-install:
-.for j in ${JMOL_FILES_EXT}
- ${INSTALL_DATA} ${WRKSRC}/${j} ${JAVAJARDIR}
-.endfor
.if !defined(WITHOUT_COMPILE)
.for j in ${JMOL_FILES}
${INSTALL_DATA} ${WRKSRC}/build/${j} ${JAVAJARDIR}
.endfor
- ${INSTALL_DATA} ${WRKSRC}/build/JmolApplet0_i18n_*.jar ${JAVAJARDIR}
.else
.for j in ${JMOL_FILES}
${INSTALL_DATA} ${WRKSRC}/${j} ${JAVAJARDIR}
.endfor
- ${INSTALL_DATA} ${WRKSRC}/build/JmolApplet0_i18n_*.jar ${JAVAJARDIR}
.endif
.if !defined(NOPORTDOCS)
Index: distinfo
===================================================================
--- distinfo (revision 328648)
+++ distinfo (working copy)
@@ -1,5 +1,5 @@
-SHA256 (Jmol-12.2.23-full.tar.gz) = 97778f1c488870433c12e3fc728cd80fa59167ac093dec9399cf7e4f7b4924a6
-SIZE (Jmol-12.2.23-full.tar.gz) = 29491696
+SHA256 (Jmol-13.2.3-full.tar.gz) = c5835015ddaebd90c286fbfd55938b6995046481c117a0cd20c7f369f61ba70f
+SIZE (Jmol-13.2.3-full.tar.gz) = 116255368
SHA256 (selfSignedCertificate.cer) = 0fa14fd5f21593a328ba4439ac17b3b507969d71a2734e392239b83ae8ec2920
SIZE (selfSignedCertificate.cer) = 735
SHA256 (selfSignedCertificate.store) = 81b69722530d94dc599ce79382a3386cce518baa7ab79fbb530d13483b51bed5
Index: pkg-plist
===================================================================
--- pkg-plist (revision 328648)
+++ pkg-plist (working copy)
@@ -16,7 +16,7 @@
%%PORTDOCS%%%%DOCSDIR%%/JmolUserGuide/ch04.html
%%PORTDOCS%%%%DOCSDIR%%/JmolUserGuide/index.html
%%PORTDOCS%%%%DOCSDIR%%/docbook-xml-4.4.zip
-%%PORTDOCS%%%%DOCSDIR%%/docbook-xsl-1.75.2.tar.gz
+%%PORTDOCS%%%%DOCSDIR%%/docbook-xsl-1.76.1.tar.gz
%%PORTDOCS%%%%DOCSDIR%%/ibm.license.html
%%PORTDOCS%%%%DOCSDIR%%/jcfl-1.2.6-source.tar.gz
%%PORTDOCS%%%%DOCSDIR%%/jpegEncoder.license
@@ -35,6 +35,7 @@
%%PORTDOCS%%%%DOCSDIR%%/source/JmolHistoryToHtml.xsl
%%PORTDOCS%%%%DOCSDIR%%/source/JmolHistory_fr.xml
%%PORTDOCS%%%%DOCSDIR%%/source/JmolHistory_nl.xml
+%%PORTDOCS%%%%DOCSDIR%%/source/JmolHistory_ro.xml
%%PORTDOCS%%%%DOCSDIR%%/source/applet/browsers.docbook.xml
%%PORTDOCS%%%%DOCSDIR%%/source/applet/browsers_fr.docbook.xml
%%PORTDOCS%%%%DOCSDIR%%/source/applet/hardware.docbook.xml
@@ -57,6 +58,7 @@
%%PORTDOCS%%%%DOCSDIR%%/source/history/changes.xml
%%PORTDOCS%%%%DOCSDIR%%/source/history/changes_fr.xml
%%PORTDOCS%%%%DOCSDIR%%/source/history/changes_nl.xml
+%%PORTDOCS%%%%DOCSDIR%%/source/history/changes_ro.xml
%%PORTDOCS%%%%DOCSDIR%%/source/history/contributors.xml
%%PORTDOCS%%%%DOCSDIR%%/source/po/JmolAppletGuide.de.po
%%PORTDOCS%%%%DOCSDIR%%/source/po/JmolAppletGuide.pot
@@ -72,58 +74,8 @@
%%PORTDOCS%%%%DOCSDIR%%/source/xml2po.sh
%%PORTDOCS%%%%DOCSDIR%%/splash.ai
%%JAVAJARDIR%%/Jmol.jar
-%%JAVAJARDIR%%/Jmol.js
-%%JAVAJARDIR%%/JmolApplet.jar
-%%JAVAJARDIR%%/JmolApplet0.jar
-%%JAVAJARDIR%%/JmolApplet0_Console.jar
-%%JAVAJARDIR%%/JmolApplet0_Minimize.jar
-%%JAVAJARDIR%%/JmolApplet0_Popup.jar
-%%JAVAJARDIR%%/JmolApplet0_ReadersCifPdb.jar
-%%JAVAJARDIR%%/JmolApplet0_ReadersMolXyz.jar
-%%JAVAJARDIR%%/JmolApplet0_ReadersMore.jar
-%%JAVAJARDIR%%/JmolApplet0_ReadersXml.jar
-%%JAVAJARDIR%%/JmolApplet0_ShapeBio.jar
-%%JAVAJARDIR%%/JmolApplet0_ShapeSpecial.jar
-%%JAVAJARDIR%%/JmolApplet0_ShapeSurface.jar
-%%JAVAJARDIR%%/JmolApplet0_Symmetry.jar
-%%JAVAJARDIR%%/JmolApplet0_Smiles.jar
%%JAVAJARDIR%%/JmolData.jar
-%%JAVAJARDIR%%/JmolApplet0_i18n_ar.jar
-%%JAVAJARDIR%%/JmolApplet0_i18n_bs.jar
-%%JAVAJARDIR%%/JmolApplet0_i18n_ca.jar
-%%JAVAJARDIR%%/JmolApplet0_i18n_cs.jar
-%%JAVAJARDIR%%/JmolApplet0_i18n_da.jar
-%%JAVAJARDIR%%/JmolApplet0_i18n_de.jar
-%%JAVAJARDIR%%/JmolApplet0_i18n_el.jar
-%%JAVAJARDIR%%/JmolApplet0_i18n_en_GB.jar
-%%JAVAJARDIR%%/JmolApplet0_i18n_es.jar
-%%JAVAJARDIR%%/JmolApplet0_i18n_et.jar
-%%JAVAJARDIR%%/JmolApplet0_i18n_fi.jar
-%%JAVAJARDIR%%/JmolApplet0_i18n_fy.jar
-%%JAVAJARDIR%%/JmolApplet0_i18n_fr.jar
-%%JAVAJARDIR%%/JmolApplet0_i18n_hu.jar
-%%JAVAJARDIR%%/JmolApplet0_i18n_hy.jar
-%%JAVAJARDIR%%/JmolApplet0_i18n_id.jar
-%%JAVAJARDIR%%/JmolApplet0_i18n_it.jar
-%%JAVAJARDIR%%/JmolApplet0_i18n_ja.jar
-%%JAVAJARDIR%%/JmolApplet0_i18n_jv.jar
-%%JAVAJARDIR%%/JmolApplet0_i18n_ko.jar
-%%JAVAJARDIR%%/JmolApplet0_i18n_nb.jar
-%%JAVAJARDIR%%/JmolApplet0_i18n_nl.jar
-%%JAVAJARDIR%%/JmolApplet0_i18n_ms.jar
-%%JAVAJARDIR%%/JmolApplet0_i18n_oc.jar
-%%JAVAJARDIR%%/JmolApplet0_i18n_pl.jar
-%%JAVAJARDIR%%/JmolApplet0_i18n_pt.jar
-%%JAVAJARDIR%%/JmolApplet0_i18n_pt_BR.jar
-%%JAVAJARDIR%%/JmolApplet0_i18n_ru.jar
-%%JAVAJARDIR%%/JmolApplet0_i18n_sl.jar
-%%JAVAJARDIR%%/JmolApplet0_i18n_sv.jar
-%%JAVAJARDIR%%/JmolApplet0_i18n_ta.jar
-%%JAVAJARDIR%%/JmolApplet0_i18n_te.jar
-%%JAVAJARDIR%%/JmolApplet0_i18n_tr.jar
-%%JAVAJARDIR%%/JmolApplet0_i18n_uk.jar
-%%JAVAJARDIR%%/JmolApplet0_i18n_zh_CN.jar
-%%JAVAJARDIR%%/JmolApplet0_i18n_zh_TW.jar
+%%JAVAJARDIR%%/JmolLib.jar
%%PORTDOCS%%@dirrm %%DOCSDIR%%/source/xml2po-modes
%%PORTDOCS%%@dirrm %%DOCSDIR%%/source/po
%%PORTDOCS%%@dirrm %%DOCSDIR%%/source/history
>Release-Note:
>Audit-Trail:
>Unformatted:
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