From nobody Thu Apr 30 12:06:14 2026 X-Original-To: dev-commits-ports-main@mlmmj.nyi.freebsd.org Received: from mx1.freebsd.org (mx1.freebsd.org [IPv6:2610:1c1:1:606c::19:1]) by mlmmj.nyi.freebsd.org (Postfix) with ESMTP id 4g5tDp2zf3z6blZw; Thu, 30 Apr 2026 12:06:18 +0000 (UTC) (envelope-from makc@freebsd.org) Received: from smtp.freebsd.org (smtp.freebsd.org [IPv6:2610:1c1:1:606c::24b:4]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) key-exchange X25519 server-signature RSA-PSS (4096 bits) server-digest SHA256 client-signature RSA-PSS (4096 bits) client-digest SHA256) (Client CN "smtp.freebsd.org", Issuer "R12" (not verified)) by mx1.freebsd.org (Postfix) with ESMTPS id 4g5tDp2TFfz3YMm; Thu, 30 Apr 2026 12:06:18 +0000 (UTC) (envelope-from makc@freebsd.org) DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=freebsd.org; s=dkim; t=1777550778; h=from:from:reply-to:subject:subject:date:date:message-id:message-id: to:to:cc:cc:mime-version:mime-version:content-type:content-type: content-transfer-encoding:content-transfer-encoding: in-reply-to:in-reply-to:references:references; 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charset="utf-8" Hi Yuri, > -RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} \ > +RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}GridDataFormats>=0.4.0:math/py-GridDataFormats@${PY_FLAVOR} \ > + ${PYTHON_PKGNAMEPREFIX}biopython>=1.80:biology/py-biopython@${PY_FLAVOR} \ > + ${PYTHON_PKGNAMEPREFIX}gsd>3.0.0:science/py-gsd@${PY_FLAVOR} \ > + ${PYTHON_PKGNAMEPREFIX}joblib>=0.12:devel/py-joblib@${PY_FLAVOR} \ > + ${PYTHON_PKGNAMEPREFIX}matplotlib>=1.5.1:math/py-matplotlib@${PY_FLAVOR} \ > clustalw2:biology/clustalw \ > rdkit>0:science/rdkit \ > - ${PYTHON_PKGNAMEPREFIX}biopython>=1.71:biology/py-biopython@${PY_FLAVOR} \ > - ${PYTHON_PKGNAMEPREFIX}GridDataFormats>=0.4.0:math/py-GridDataFormats@${PY_FLAVOR} \ > - ${PYTHON_PKGNAMEPREFIX}fasteners>0:devel/py-fasteners@${PY_FLAVOR} \ > - ${PYTHON_PKGNAMEPREFIX}gsd>=1.9.3:science/py-gsd@${PY_FLAVOR} \ > - ${PYTHON_PKGNAMEPREFIX}joblib>0:devel/py-joblib@${PY_FLAVOR} \ > - ${PYTHON_PKGNAMEPREFIX}matplotlib>=1.5.1:math/py-matplotlib@${PY_FLAVOR} \ > ${PYTHON_PKGNAMEPREFIX}mmtf-python>=1.0.0:science/py-mmtf-python@${PY_FLAVOR} \ > ${PYTHON_PKGNAMEPREFIX}networkx>=2.0:math/py-networkx@${PY_FLAVOR} \ > + ${PYTHON_PKGNAMEPREFIX}numpy>=1.26.0:math/py-numpy@${PY_FLAVOR} \ > ${PYTHON_PKGNAMEPREFIX}scipy>=1.5.0:science/py-scipy@${PY_FLAVOR} \ science/py-scipy still depends on math/py-numpy1, so this update breaks the port. btw, I'd appreciate your feedback for https://bugs.freebsd.org/294328 Max