From owner-freebsd-amd64@FreeBSD.ORG  Mon Oct 18 17:42:28 2004
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Date: Mon, 18 Oct 2004 19:42:25 +0200
From: Gert Cuykens <gert.cuykens@gmail.com>
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Subject: Re: cvsup
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And that would translate into ?

download ftp://ftp.freebsd.org/pub/FreeBSD/ports/ports/ports.tar.gz

make deinstall 
rm -rf /usr/ports/
tar -??? ports.tar.gz /usr/ports/
make install clean

or just 

make deinstall install clean