From owner-freebsd-ports-bugs@freebsd.org Mon Aug 13 22:45:07 2018 Return-Path: Delivered-To: freebsd-ports-bugs@mailman.ysv.freebsd.org Received: from mx1.freebsd.org (mx1.freebsd.org [IPv6:2610:1c1:1:606c::19:1]) by mailman.ysv.freebsd.org (Postfix) with ESMTP id 694D6107FD7B for ; Mon, 13 Aug 2018 22:45:07 +0000 (UTC) (envelope-from bugzilla-noreply@freebsd.org) Received: from mailman.ysv.freebsd.org (mailman.ysv.freebsd.org [IPv6:2001:1900:2254:206a::50:5]) by mx1.freebsd.org (Postfix) with ESMTP id E46F370A7A for ; Mon, 13 Aug 2018 22:45:06 +0000 (UTC) (envelope-from bugzilla-noreply@freebsd.org) Received: by mailman.ysv.freebsd.org (Postfix) id A60ED107FD78; Mon, 13 Aug 2018 22:45:06 +0000 (UTC) Delivered-To: ports-bugs@mailman.ysv.freebsd.org Received: from mx1.freebsd.org (mx1.freebsd.org [IPv6:2610:1c1:1:606c::19:1]) by mailman.ysv.freebsd.org (Postfix) with ESMTP id 8271E107FD77 for ; Mon, 13 Aug 2018 22:45:06 +0000 (UTC) (envelope-from bugzilla-noreply@freebsd.org) Received: from mxrelay.ysv.freebsd.org (mxrelay.ysv.freebsd.org [IPv6:2001:1900:2254:206a::19:3]) (using TLSv1.2 with cipher ECDHE-RSA-AES256-GCM-SHA384 (256/256 bits)) (Client CN "mxrelay.ysv.freebsd.org", Issuer "Let's Encrypt Authority X3" (verified OK)) by mx1.freebsd.org (Postfix) with ESMTPS id 168D470A6D for ; Mon, 13 Aug 2018 22:45:06 +0000 (UTC) (envelope-from bugzilla-noreply@freebsd.org) Received: from kenobi.freebsd.org (kenobi.freebsd.org [IPv6:2001:1900:2254:206a::16:76]) (using TLSv1.2 with cipher ECDHE-RSA-AES256-GCM-SHA384 (256/256 bits)) (Client did not present a certificate) by mxrelay.ysv.freebsd.org (Postfix) with ESMTPS id 442D0108FC for ; Mon, 13 Aug 2018 22:45:05 +0000 (UTC) (envelope-from bugzilla-noreply@freebsd.org) Received: from kenobi.freebsd.org ([127.0.1.118]) by kenobi.freebsd.org (8.15.2/8.15.2) with ESMTP id w7DMj5i4019173 for ; Mon, 13 Aug 2018 22:45:05 GMT (envelope-from bugzilla-noreply@freebsd.org) Received: (from www@localhost) by kenobi.freebsd.org (8.15.2/8.15.2/Submit) id w7DMj5RN019171 for ports-bugs@FreeBSD.org; Mon, 13 Aug 2018 22:45:05 GMT (envelope-from bugzilla-noreply@freebsd.org) X-Authentication-Warning: kenobi.freebsd.org: www set sender to bugzilla-noreply@freebsd.org using -f From: bugzilla-noreply@freebsd.org To: ports-bugs@FreeBSD.org Subject: [Bug 230609] biology/seqtools: fails to build with LLD 7 Date: Mon, 13 Aug 2018 22:45:04 +0000 X-Bugzilla-Reason: AssignedTo X-Bugzilla-Type: new X-Bugzilla-Watch-Reason: None X-Bugzilla-Product: Ports & Packages X-Bugzilla-Component: Individual Port(s) X-Bugzilla-Version: Latest X-Bugzilla-Keywords: needs-patch X-Bugzilla-Severity: Affects Only Me X-Bugzilla-Who: jbeich@FreeBSD.org X-Bugzilla-Status: New X-Bugzilla-Resolution: X-Bugzilla-Priority: --- X-Bugzilla-Assigned-To: pi@FreeBSD.org X-Bugzilla-Flags: maintainer-feedback? X-Bugzilla-Changed-Fields: bug_id short_desc product version rep_platform op_sys bug_status keywords bug_severity priority component assigned_to reporter blocked flagtypes.name Message-ID: Content-Type: text/plain; charset="UTF-8" Content-Transfer-Encoding: quoted-printable X-Bugzilla-URL: https://bugs.freebsd.org/bugzilla/ Auto-Submitted: auto-generated MIME-Version: 1.0 X-BeenThere: freebsd-ports-bugs@freebsd.org X-Mailman-Version: 2.1.27 Precedence: list List-Id: Ports bug reports List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , X-List-Received-Date: Mon, 13 Aug 2018 22:45:07 -0000 https://bugs.freebsd.org/bugzilla/show_bug.cgi?id=3D230609 Bug ID: 230609 Summary: biology/seqtools: fails to build with LLD 7 Product: Ports & Packages Version: Latest Hardware: Any OS: Any Status: New Keywords: needs-patch Severity: Affects Only Me Priority: --- Component: Individual Port(s) Assignee: pi@FreeBSD.org Reporter: jbeich@FreeBSD.org Blocks: 230355 Flags: maintainer-feedback?(pi@FreeBSD.org) Assignee: pi@FreeBSD.org $ poudriere jail -cj clang7 -a amd64 -v projects/clang700-import -m svn+htt= ps $ poudriere testport -j clang7 biology/seqtools [...] ld: error: undefined symbol: dumpStack >>> referenced by errAbort.c >>> libblatSrc_la-errAbort.o:(pushWarnHandler) in archive ../= gbtools/.libs/libgbtools.a ld: error: undefined symbol: dumpStack >>> referenced by errAbort.c >>> libblatSrc_la-errAbort.o:(popWarnHandler) in archive ../g= btools/.libs/libgbtools.a ld: error: undefined symbol: dumpStack >>> referenced by errAbort.c >>> libblatSrc_la-errAbort.o:(pushAbortHandler) in archive ..= /gbtools/.libs/libgbtools.a ld: error: undefined symbol: dumpStack >>> referenced by errAbort.c >>> libblatSrc_la-errAbort.o:(popAbortHandler) in archive ../= gbtools/.libs/libgbtools.a ld: error: undefined symbol: dumpStack >>> referenced by errAbort.c >>> libblatSrc_la-errAbort.o:(pushDebugAbort) in archive ../g= btools/.libs/libgbtools.a ld: error: undefined symbol: dumpStack >>> referenced by errAbort.c >>> libblatSrc_la-errAbort.o:(pushWarnAbort) in archive ../gb= tools/.libs/libgbtools.a ld: error: undefined symbol: dumpStack >>> referenced by errAbort.c >>> libblatSrc_la-errAbort.o:(pushSilentWarnHandler) in archi= ve ../gbtools/.libs/libgbtools.a ld: error: undefined symbol: fileSize >>> referenced by common.c >>> libblatSrc_la-common.o:(fileExists) in archive ../gbtools= /.libs/libgbtools.a ld: error: undefined symbol: clock1000 >>> referenced by common.c >>> libblatSrc_la-common.o:(uglyTime) in archive ../gbtools/.= libs/libgbtools.a ld: error: undefined symbol: makeDir >>> referenced by common.c >>> libblatSrc_la-common.o:(makeDirs) in archive ../gbtools/.= libs/libgbtools.a ld: error: undefined symbol: makeDir >>> referenced by common.c >>> libblatSrc_la-common.o:(makeDirs) in archive ../gbtools/.= libs/libgbtools.a ld: error: undefined symbol: clock1 >>> referenced by common.c >>> libblatSrc_la-common.o:(dateIsOld) in archive ../gbtools/= .libs/libgbtools.a ld: error: undefined symbol: clock1 >>> referenced by common.c >>> libblatSrc_la-common.o:(dateIsOlderBy) in archive ../gbto= ols/.libs/libgbtools.a ld: error: undefined symbol: dumpStack >>> referenced by cheapcgi.c >>> libblatSrc_la-cheapcgi.o:(catchSignal) in archive ../gbto= ols/.libs/libgbtools.a ld: error: undefined symbol: fileSize >>> referenced by obscure.c >>> libblatSrc_la-obscure.o:(readInGulp) in archive ../gbtool= s/.libs/libgbtools.a ld: error: undefined symbol: fileSize >>> referenced by obscure.c >>> libblatSrc_la-obscure.o:(readAllWords) in archive ../gbto= ols/.libs/libgbtools.a ld: error: undefined symbol: makeDir >>> referenced by portimpl.c >>> libblatSrc_la-portimpl.o:(makeDirsOnPath) in archive ../g= btools/.libs/libgbtools.a ld: error: undefined symbol: makeDir >>> referenced by portimpl.c >>> libblatSrc_la-portimpl.o:(makeDirsOnPath) in archive ../g= btools/.libs/libgbtools.a ld: error: undefined symbol: rTempName >>> referenced by servBrcMcw.c >>> libblatSrc_la-servBrcMcw.o:(_makeTempName) in archive ../= gbtools/.libs/libgbtools.a ld: error: undefined symbol: rTempName >>> referenced by servCrunx.c >>> libblatSrc_la-servCrunx.o:(_makeTempName) in archive ../g= btools/.libs/libgbtools.a ld: error: too many errors emitted, stopping now (use -error-limit=3D0 to s= ee all errors) c++: error: linker command failed with exit code 1 (use -v to see invocatio= n) http://package18.nyi.freebsd.org/data/headamd64PR230355-default/2018-08-11_= 19h01m06s/logs/errors/seqtools-4.44.1_2.log Referenced Bugs: https://bugs.freebsd.org/bugzilla/show_bug.cgi?id=3D230355 [Bug 230355] [exp-run] Against projects/clang700-import branch --=20 You are receiving this mail because: You are the assignee for the bug.=