Date: Sun, 17 Oct 2021 15:49:49 GMT From: Yuri Victorovich <yuri@FreeBSD.org> To: ports-committers@FreeBSD.org, dev-commits-ports-all@FreeBSD.org, dev-commits-ports-main@FreeBSD.org Subject: git: 73582eca147a - main - math/stanmath: Update 4.1.0 -> 4.2.0 Message-ID: <202110171549.19HFnnRq068260@gitrepo.freebsd.org>
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The branch main has been updated by yuri: URL: https://cgit.FreeBSD.org/ports/commit/?id=73582eca147ae8dc7cf6ba63f25b95a2da0a4493 commit 73582eca147ae8dc7cf6ba63f25b95a2da0a4493 Author: Yuri Victorovich <yuri@FreeBSD.org> AuthorDate: 2021-10-17 15:31:10 +0000 Commit: Yuri Victorovich <yuri@FreeBSD.org> CommitDate: 2021-10-17 15:49:40 +0000 math/stanmath: Update 4.1.0 -> 4.2.0 Reported by: portscout --- math/stanmath/Makefile | 2 +- math/stanmath/distinfo | 6 +++--- math/stanmath/pkg-plist | 38 ++++++++++++++++++++++++++++++++++++++ 3 files changed, 42 insertions(+), 4 deletions(-) diff --git a/math/stanmath/Makefile b/math/stanmath/Makefile index 7ab572e4b6d1..895789ef29b0 100644 --- a/math/stanmath/Makefile +++ b/math/stanmath/Makefile @@ -1,6 +1,6 @@ PORTNAME= stanmath DISTVERSIONPREFIX= v -DISTVERSION= 4.1.0 +DISTVERSION= 4.2.0 CATEGORIES= math MAINTAINER= yuri@FreeBSD.org diff --git a/math/stanmath/distinfo b/math/stanmath/distinfo index 2ee48ed4f9c4..783d940c35f9 100644 --- a/math/stanmath/distinfo +++ b/math/stanmath/distinfo @@ -1,3 +1,3 @@ -TIMESTAMP = 1630043342 -SHA256 (stan-dev-math-v4.1.0_GH0.tar.gz) = f526be5f24864f256409ae5e4a17a5858e762a23c329d615a0709cd3935197ba -SIZE (stan-dev-math-v4.1.0_GH0.tar.gz) = 28210482 +TIMESTAMP = 1634484296 +SHA256 (stan-dev-math-v4.2.0_GH0.tar.gz) = 5201f94bef40c59496b86e29ba41285a7196e436c551c92c5d22ade2558e30c6 +SIZE (stan-dev-math-v4.2.0_GH0.tar.gz) = 28245840 diff --git a/math/stanmath/pkg-plist b/math/stanmath/pkg-plist index ff623f8798b6..3bf30e281e04 100644 --- a/math/stanmath/pkg-plist +++ b/math/stanmath/pkg-plist @@ -25,6 +25,7 @@ include/stan/math/fwd/fun/Eigen_NumTraits.hpp include/stan/math/fwd/fun/Phi.hpp include/stan/math/fwd/fun/Phi_approx.hpp include/stan/math/fwd/fun/abs.hpp +include/stan/math/fwd/fun/accumulator.hpp include/stan/math/fwd/fun/acos.hpp include/stan/math/fwd/fun/acosh.hpp include/stan/math/fwd/fun/arg.hpp @@ -161,11 +162,13 @@ include/stan/math/mix/meta.hpp include/stan/math/opencl/buffer_types.hpp include/stan/math/opencl/cholesky_decompose.hpp include/stan/math/opencl/copy.hpp +include/stan/math/opencl/double_d.hpp include/stan/math/opencl/err.hpp include/stan/math/opencl/err/check_mat_size_one.hpp include/stan/math/opencl/err/check_opencl.hpp include/stan/math/opencl/err/check_symmetric.hpp include/stan/math/opencl/err/check_triangular.hpp +include/stan/math/opencl/indexing_rev.hpp include/stan/math/opencl/is_constant.hpp include/stan/math/opencl/kernel_cl.hpp include/stan/math/opencl/kernel_generator.hpp @@ -210,8 +213,10 @@ include/stan/math/opencl/kernels/batch_identity.hpp include/stan/math/opencl/kernels/categorical_logit_glm_lpmf.hpp include/stan/math/opencl/kernels/check_symmetric.hpp include/stan/math/opencl/kernels/cholesky_decompose.hpp +include/stan/math/opencl/kernels/cumulative_sum.hpp include/stan/math/opencl/kernels/device_functions/Phi.hpp include/stan/math/opencl/kernels/device_functions/Phi_approx.hpp +include/stan/math/opencl/kernels/device_functions/atomic_add_double.hpp include/stan/math/opencl/kernels/device_functions/beta.hpp include/stan/math/opencl/kernels/device_functions/binomial_coefficient_log.hpp include/stan/math/opencl/kernels/device_functions/digamma.hpp @@ -239,8 +244,11 @@ include/stan/math/opencl/kernels/gp_exponential_cov.hpp include/stan/math/opencl/kernels/gp_matern32_cov.hpp include/stan/math/opencl/kernels/gp_matern52_cov.hpp include/stan/math/opencl/kernels/helpers.hpp +include/stan/math/opencl/kernels/indexing_rev.hpp include/stan/math/opencl/kernels/inv_lower_tri_multiply.hpp include/stan/math/opencl/kernels/matrix_multiply.hpp +include/stan/math/opencl/kernels/mergesort.hpp +include/stan/math/opencl/kernels/mrrr.hpp include/stan/math/opencl/kernels/multiply_transpose.hpp include/stan/math/opencl/kernels/neg_binomial_2_log_glm_lpmf.hpp include/stan/math/opencl/kernels/neg_rect_lower_tri_multiply.hpp @@ -248,9 +256,11 @@ include/stan/math/opencl/kernels/ordered_logistic_glm_lpmf.hpp include/stan/math/opencl/kernels/ordered_logistic_lpmf.hpp include/stan/math/opencl/kernels/pack.hpp include/stan/math/opencl/kernels/rep_matrix.hpp +include/stan/math/opencl/kernels/tridiagonalization.hpp include/stan/math/opencl/kernels/unpack.hpp include/stan/math/opencl/matrix_cl.hpp include/stan/math/opencl/matrix_cl_view.hpp +include/stan/math/opencl/mrrr.hpp include/stan/math/opencl/multiply_transpose.hpp include/stan/math/opencl/opencl_context.hpp include/stan/math/opencl/pinned_matrix.hpp @@ -282,6 +292,7 @@ include/stan/math/opencl/prim/cols.hpp include/stan/math/opencl/prim/columns_dot_product.hpp include/stan/math/opencl/prim/columns_dot_self.hpp include/stan/math/opencl/prim/crossprod.hpp +include/stan/math/opencl/prim/cumulative_sum.hpp include/stan/math/opencl/prim/diag_matrix.hpp include/stan/math/opencl/prim/diag_post_multiply.hpp include/stan/math/opencl/prim/diag_pre_multiply.hpp @@ -296,6 +307,8 @@ include/stan/math/opencl/prim/double_exponential_cdf.hpp include/stan/math/opencl/prim/double_exponential_lccdf.hpp include/stan/math/opencl/prim/double_exponential_lcdf.hpp include/stan/math/opencl/prim/double_exponential_lpdf.hpp +include/stan/math/opencl/prim/eigenvalues_sym.hpp +include/stan/math/opencl/prim/eigenvectors_sym.hpp include/stan/math/opencl/prim/exp_mod_normal_cdf.hpp include/stan/math/opencl/prim/exp_mod_normal_lccdf.hpp include/stan/math/opencl/prim/exp_mod_normal_lcdf.hpp @@ -370,6 +383,10 @@ include/stan/math/opencl/prim/poisson_log_glm_lpmf.hpp include/stan/math/opencl/prim/poisson_log_lpmf.hpp include/stan/math/opencl/prim/poisson_lpmf.hpp include/stan/math/opencl/prim/prod.hpp +include/stan/math/opencl/prim/qr_Q.hpp +include/stan/math/opencl/prim/qr_R.hpp +include/stan/math/opencl/prim/qr_thin_Q.hpp +include/stan/math/opencl/prim/qr_thin_R.hpp include/stan/math/opencl/prim/rank.hpp include/stan/math/opencl/prim/rayleigh_cdf.hpp include/stan/math/opencl/prim/rayleigh_lccdf.hpp @@ -395,6 +412,8 @@ include/stan/math/opencl/prim/skew_double_exponential_lcdf.hpp include/stan/math/opencl/prim/skew_double_exponential_lpdf.hpp include/stan/math/opencl/prim/skew_normal_lpdf.hpp include/stan/math/opencl/prim/softmax.hpp +include/stan/math/opencl/prim/sort_asc.hpp +include/stan/math/opencl/prim/sort_desc.hpp include/stan/math/opencl/prim/squared_distance.hpp include/stan/math/opencl/prim/std_normal_cdf.hpp include/stan/math/opencl/prim/std_normal_lccdf.hpp @@ -425,6 +444,7 @@ include/stan/math/opencl/prim/weibull_cdf.hpp include/stan/math/opencl/prim/weibull_lccdf.hpp include/stan/math/opencl/prim/weibull_lcdf.hpp include/stan/math/opencl/prim/weibull_lpdf.hpp +include/stan/math/opencl/qr_decomposition.hpp include/stan/math/opencl/ref_type.hpp include/stan/math/opencl/ref_type_for_opencl.hpp include/stan/math/opencl/rev.hpp @@ -455,6 +475,7 @@ include/stan/math/opencl/rev/copy.hpp include/stan/math/opencl/rev/cos.hpp include/stan/math/opencl/rev/cosh.hpp include/stan/math/opencl/rev/crossprod.hpp +include/stan/math/opencl/rev/cumulative_sum.hpp include/stan/math/opencl/rev/diag_matrix.hpp include/stan/math/opencl/rev/diag_post_multiply.hpp include/stan/math/opencl/rev/diag_pre_multiply.hpp @@ -545,8 +566,10 @@ include/stan/math/opencl/rev/vari.hpp include/stan/math/opencl/rev/variance.hpp include/stan/math/opencl/scalar_type.hpp include/stan/math/opencl/stringify.hpp +include/stan/math/opencl/symmetric_eigensolver.hpp include/stan/math/opencl/to_ref_for_opencl.hpp include/stan/math/opencl/tri_inverse.hpp +include/stan/math/opencl/tridiagonalization.hpp include/stan/math/opencl/value_type.hpp include/stan/math/opencl/zeros_strict_tri.hpp include/stan/math/prim.hpp @@ -632,9 +655,11 @@ include/stan/math/prim/err/is_size_match.hpp include/stan/math/prim/err/is_square.hpp include/stan/math/prim/err/is_symmetric.hpp include/stan/math/prim/err/is_unit_vector.hpp +include/stan/math/prim/err/make_iter_name.hpp include/stan/math/prim/err/out_of_range.hpp include/stan/math/prim/err/system_error.hpp include/stan/math/prim/err/throw_domain_error.hpp +include/stan/math/prim/err/throw_domain_error_mat.hpp include/stan/math/prim/err/throw_domain_error_vec.hpp include/stan/math/prim/err/validate_non_negative_index.hpp include/stan/math/prim/err/validate_positive_index.hpp @@ -756,7 +781,9 @@ include/stan/math/prim/fun/generalized_inverse.hpp include/stan/math/prim/fun/get.hpp include/stan/math/prim/fun/get_base1.hpp include/stan/math/prim/fun/get_base1_lhs.hpp +include/stan/math/prim/fun/get_imag.hpp include/stan/math/prim/fun/get_lp.hpp +include/stan/math/prim/fun/get_real.hpp include/stan/math/prim/fun/gp_dot_prod_cov.hpp include/stan/math/prim/fun/gp_exp_quad_cov.hpp include/stan/math/prim/fun/gp_exponential_cov.hpp @@ -978,6 +1005,7 @@ include/stan/math/prim/fun/tcrossprod.hpp include/stan/math/prim/fun/tgamma.hpp include/stan/math/prim/fun/to_array_1d.hpp include/stan/math/prim/fun/to_array_2d.hpp +include/stan/math/prim/fun/to_complex.hpp include/stan/math/prim/fun/to_matrix.hpp include/stan/math/prim/fun/to_ref.hpp include/stan/math/prim/fun/to_row_vector.hpp @@ -1009,6 +1037,7 @@ include/stan/math/prim/fun/zeros_int_array.hpp include/stan/math/prim/fun/zeros_row_vector.hpp include/stan/math/prim/fun/zeros_vector.hpp include/stan/math/prim/functor.hpp +include/stan/math/prim/functor/algebra_solver_adapter.hpp include/stan/math/prim/functor/apply.hpp include/stan/math/prim/functor/apply_scalar_binary.hpp include/stan/math/prim/functor/apply_scalar_unary.hpp @@ -1064,6 +1093,7 @@ include/stan/math/prim/meta/is_base_pointer_convertible.hpp include/stan/math/prim/meta/is_complex.hpp include/stan/math/prim/meta/is_constant.hpp include/stan/math/prim/meta/is_container.hpp +include/stan/math/prim/meta/is_container_or_var_matrix.hpp include/stan/math/prim/meta/is_dense_dynamic.hpp include/stan/math/prim/meta/is_detected.hpp include/stan/math/prim/meta/is_double_or_int.hpp @@ -1080,6 +1110,7 @@ include/stan/math/prim/meta/is_matrix_cl.hpp include/stan/math/prim/meta/is_plain_type.hpp include/stan/math/prim/meta/is_rev_matrix.hpp include/stan/math/prim/meta/is_stan_scalar.hpp +include/stan/math/prim/meta/is_stan_scalar_or_eigen.hpp include/stan/math/prim/meta/is_string_convertible.hpp include/stan/math/prim/meta/is_var.hpp include/stan/math/prim/meta/is_var_dense_dynamic.hpp @@ -1551,9 +1582,12 @@ include/stan/math/rev/fun/LDLT_factor.hpp include/stan/math/rev/fun/Phi.hpp include/stan/math/rev/fun/Phi_approx.hpp include/stan/math/rev/fun/abs.hpp +include/stan/math/rev/fun/accumulator.hpp include/stan/math/rev/fun/acos.hpp include/stan/math/rev/fun/acosh.hpp include/stan/math/rev/fun/adjoint_of.hpp +include/stan/math/rev/fun/append_col.hpp +include/stan/math/rev/fun/append_row.hpp include/stan/math/rev/fun/arg.hpp include/stan/math/rev/fun/as_array_or_scalar.hpp include/stan/math/rev/fun/as_bool.hpp @@ -1686,6 +1720,8 @@ include/stan/math/rev/fun/read_corr_matrix.hpp include/stan/math/rev/fun/read_cov_L.hpp include/stan/math/rev/fun/read_cov_matrix.hpp include/stan/math/rev/fun/rep_matrix.hpp +include/stan/math/rev/fun/rep_row_vector.hpp +include/stan/math/rev/fun/rep_vector.hpp include/stan/math/rev/fun/rising_factorial.hpp include/stan/math/rev/fun/round.hpp include/stan/math/rev/fun/rows_dot_product.hpp @@ -1711,6 +1747,7 @@ include/stan/math/rev/fun/tgamma.hpp include/stan/math/rev/fun/to_arena.hpp include/stan/math/rev/fun/to_var.hpp include/stan/math/rev/fun/to_var_value.hpp +include/stan/math/rev/fun/to_vector.hpp include/stan/math/rev/fun/trace.hpp include/stan/math/rev/fun/trace_gen_inv_quad_form_ldlt.hpp include/stan/math/rev/fun/trace_gen_quad_form.hpp @@ -1728,6 +1765,7 @@ include/stan/math/rev/functor/algebra_solver_fp.hpp include/stan/math/rev/functor/algebra_solver_newton.hpp include/stan/math/rev/functor/algebra_solver_powell.hpp include/stan/math/rev/functor/algebra_system.hpp +include/stan/math/rev/functor/apply_scalar_binary.hpp include/stan/math/rev/functor/apply_scalar_unary.hpp include/stan/math/rev/functor/apply_vector_unary.hpp include/stan/math/rev/functor/coupled_ode_system.hpp
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