Date: Sat, 4 Oct 2014 05:16:05 GMT From: pkg-fallout@FreeBSD.org To: wenheping@gmail.com Cc: pkg-fallout@FreeBSD.org Subject: [package - 91i386-default][math/py-pymc] Failed for py27-pymc-2.3_2, 1 in build Message-ID: <201410040516.s945G54Y080541@beefy1.isc.freebsd.org>
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Maintainer: wenheping@gmail.com Last committer: gerald@FreeBSD.org Ident: $FreeBSD: head/math/py-pymc/Makefile 367888 2014-09-10 20:50:31Z gerald $ Log URL: http://beefy1.isc.freebsd.org/data/91i386-default/2014-10-03_15h58m29s/logs/py27-pymc-2.3_2,1.log Build URL: http://beefy1.isc.freebsd.org/build.html?mastername=91i386-default&build=2014-10-03_15h58m29s Log: ====>> Building math/py-pymc build started at Sat Oct 4 05:14:37 UTC 2014 port directory: /usr/ports/math/py-pymc building for: FreeBSD 91i386-default-job-19 9.1-RELEASE-p19 FreeBSD 9.1-RELEASE-p19 i386 maintained by: wenheping@gmail.com Makefile ident: $FreeBSD: head/math/py-pymc/Makefile 367888 2014-09-10 20:50:31Z gerald $ Poudriere version: 3.1-pre Host OSVERSION: 1100027 Jail OSVERSION: 901000 ---Begin Environment--- UNAME_m=i386 UNAME_p=i386 OSVERSION=901000 UNAME_v=FreeBSD 9.1-RELEASE-p19 UNAME_r=9.1-RELEASE-p19 BLOCKSIZE=K MAIL=/var/mail/root STATUS=1 SAVED_TERM=screen MASTERMNT=/usr/local/poudriere/data/.m/91i386-default/ref PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/games:/usr/local/sbin:/usr/local/bin:/root/bin POUDRIERE_BUILD_TYPE=bulk PKGNAME=py27-pymc-2.3_2,1 OLDPWD=/home/bdrewery/pkg PWD=/usr/local/poudriere/data/.m/91i386-default/ref/.p/pool MASTERNAME=91i386-default USER=root HOME=/root POUDRIERE_VERSION=3.1-pre LOCALBASE=/usr/local PACKAGE_BUILDING=yes ---End Environment--- ---Begin OPTIONS List--- ===> The following configuration options are available for py27-pymc-2.3_2,1: DOCS=on: Build and/or install documentation ===> Use 'make config' to modify these settings ---End OPTIONS List--- --CONFIGURE_ARGS-- --End CONFIGURE_ARGS-- --CONFIGURE_ENV-- XDG_DATA_HOME=/wrkdirs/usr/ports/math/py-pymc/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/math/py-pymc/work HOME=/wrkdirs/usr/ports/math/py-pymc/work TMPDIR="/tmp" PYTHON="/usr/local/bin/python2.7" SHELL=/bin/sh CONFIG_SHELL=/bin/sh --End CONFIGURE_ENV-- --MAKE_ENV-- XDG_DATA_HOME=/wrkdirs/usr/ports/math/py-pymc/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/math/py-pymc/work HOME=/wrkdirs/usr/ports/math/py-pymc/work TMPDIR="/tmp" NO_PIE=yes SHELL=/bin/sh NO_LINT=YES LDSHARED="cc -shared" PYTHONDONTWRITEBYTECODE= PYTHONOPTIMIZE= PREFIX=/usr/local LOCALBASE=/usr/local LIBDIR="/usr/lib" CC="cc" CFLAGS="-O2 -pipe -fno-strict-aliasing" CPP="cpp" CPPFLAGS="" LDFLAGS="" LIBS="" CXX="c++" CXXFLAGS="-O2 -pipe -fno-strict-aliasing" MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -o root -g wheel -m 555" BSD_INSTALL_LIB="install -s -o root -g wheel -m 444" BSD_INSTALL_SCRIPT="install -o root -g wheel -m 555" BSD_INSTALL_DATA="install -o root -g wheel -m 0644" BSD_INSTALL_MAN="install -o root -g wheel -m 444" --End MAKE_ENV-- --PLIST_SUB-- PYTHON_INCLUDEDIR=include/python2.7 PYTHON_LIBDIR=lib/python2.7 PYTHON_PLATFORM=freebsd9 PYTHON_SITELIBDIR=lib/python2.7/site-packages PYTHON_VERSION=python2.7 PYTHON_VER=2.7 OSREL=9.1 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local PORTDOCS="" PORTEXAMPLES="" LIB32DIR=lib DOCSDIR="share/doc/py-pymc" EXAMPLESDIR="share/examples/pymc" DATADIR="share/pymc" WWWDIR="www/pymc" ETCDIR="etc/pymc" --End PLIST_SUB-- --SUB_LIST-- PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/pymc DOCSDIR=/usr/local/share/doc/py-pymc EXAMPLESDIR=/usr/local/share/examples/pymc WWWDIR=/usr/local/www/pymc ETCDIR=/usr/local/etc/pymc --End SUB_LIST-- ---Begin make.conf--- ARCH=i386 MACHINE=i386 MACHINE_ARCH=i386 USE_PACKAGE_DEPENDS=yes BATCH=yes WRKDIRPREFIX=/wrkdirs ARCH=i386 MACHINE=i386 MACHINE_ARCH=i386 USE_PACKAGE_DEPENDS=yes BATCH=yes WRKDIRPREFIX=/wrkdirs PORTSDIR=/usr/ports PACKAGES=/packages DISTDIR=/distfiles #### /usr/local/etc/poudriere.d/make.conf #### WITH_PKGNG=yes #WITH_PKGNG=devel # clean-restricted via poudriere.conf NO_RESTRICTED #NO_RESTRICTED=yes DISABLE_MAKE_JOBS=poudriere ---End make.conf--- =======================<phase: check-sanity >============================ ===> License AFL accepted by the user =========================================================================== =======================<phase: pkg-depends >============================ ===> py27-pymc-2.3_2,1 depends on file: /usr/local/sbin/pkg - not found ===> Verifying install for /usr/local/sbin/pkg in /usr/ports/ports-mgmt/pkg ===> Installing existing package /packages/All/pkg-1.3.8_2.txz [91i386-default-job-19] Installing pkg-1.3.8_2... done Message for pkg-1.3.8_2: If you are upgrading from the old package format, first run: # pkg2ng ===> Returning to build of py27-pymc-2.3_2,1 =========================================================================== =======================<phase: fetch-depends >============================ =========================================================================== =======================<phase: fetch >============================ ===> License AFL accepted by the user ===> Fetching all distfiles required by py27-pymc-2.3_2,1 for building =========================================================================== =======================<phase: checksum >============================ ===> License AFL accepted by the user ===> Fetching all distfiles required by py27-pymc-2.3_2,1 for building => SHA256 Checksum OK for pymc-2.3.tar.gz. =========================================================================== =======================<phase: extract-depends>============================ =========================================================================== =======================<phase: extract >============================ ===> License AFL accepted by the user ===> Fetching all distfiles required by py27-pymc-2.3_2,1 for building ===> Extracting for py27-pymc-2.3_2,1 => SHA256 Checksum OK for pymc-2.3.tar.gz. =========================================================================== =======================<phase: patch-depends >============================ =========================================================================== =======================<phase: patch >============================ ===> Patching for py27-pymc-2.3_2,1 =========================================================================== =======================<phase: build-depends >============================ ===> py27-pymc-2.3_2,1 depends on file: /usr/local/lib/python2.7/site-packages/numpy/core/numeric.py - not found ===> Verifying install for /usr/local/lib/python2.7/site-packages/numpy/core/numeric.py in /usr/ports/math/py-numpy ===> Installing existing package /packages/All/py27-numpy-1.8.1_4,1.txz [91i386-default-job-19] Installing indexinfo-0.2... done [91i386-default-job-19] Installing libiconv-1.14_4... done [91i386-default-job-19] Installing gettext-0.18.3.1_1... done [91i386-default-job-19] Installing binutils-2.24_1... done [91i386-default-job-19] Installing gcc-ecj-4.5... done [91i386-default-job-19] Installing gmp-5.1.3_2... done [91i386-default-job-19] Installing mpfr-3.1.2_2... done [91i386-default-job-19] Installing mpc-1.0.2_1... done [91i386-default-job-19] Installing gcc-4.8.3_1... done [91i386-default-job-19] Installing blas-3.4.2_3... done [91i386-default-job-19] Installing lapack-3.4.2_3... done [91i386-default-job-19] Installing python27-2.7.8_5... done [91i386-default-job-19] Installing py27-setuptools27-5.5.1... done [91i386-default-job-19] Installing py27-nose-1.3.3... done [91i386-default-job-19] Installing suitesparse-4.0.2_4... done [91i386-default-job-19] Installing py27-numpy-1.8.1_4,1... done Message for gcc-4.8.3_1: To ensure binaries built with this toolchain find appropriate versions of the necessary run-time libraries, you may want to link using -Wl,-rpath=/usr/local/lib/gcc48 For ports leveraging USE_GCC, USES=compiler, or USES=fortran this happens transparently. Message for python27-2.7.8_5: ===================================================================== Note that some standard Python modules are provided as separate ports as they require additional dependencies. They are available as: bsddb databases/py-bsddb gdbm databases/py-gdbm sqlite3 databases/py-sqlite3 tkinter x11-toolkits/py-tkinter ===================================================================== ===> Returning to build of py27-pymc-2.3_2,1 ===> py27-pymc-2.3_2,1 depends on package: py27-matplotlib>0 - not found ===> Verifying install for py27-matplotlib>0 in /usr/ports/math/py-matplotlib ===> Installing existing package /packages/All/py27-matplotlib-1.4.0.txz [91i386-default-job-19] Installing libffi-3.0.13_2... done [91i386-default-job-19] Installing pcre-8.35... done [91i386-default-job-19] Installing perl5-5.16.3_11... done [91i386-default-job-19] Installing glib-2.36.3_4... done No schema files found: doing nothing. [91i386-default-job-19] Installing gnomehier-3.0... done [91i386-default-job-19] Installing atk-2.8.0_1... done [91i386-default-job-19] Installing freetype2-2.5.3_2... done ===> Creating users and/or groups. Creating group 'cups' with gid '193'. Creating user 'cups' with uid '193'. <snip> pymc/flib.f:3396.58: DOUBLE PRECISION gradlike(nx), atmp, btmp, PI, glike 1 Warning: Unused variable 'glike' declared at (1) pymc/flib.f:3646.37: DOUBLE PRECISION gammln, factln 1 Warning: Unused variable 'factln' declared at (1) pymc/flib.f:3646.29: DOUBLE PRECISION gammln, factln 1 Warning: Unused variable 'gammln' declared at (1) pymc/flib.f:3706.37: DOUBLE PRECISION gammln, factln, psi 1 Warning: Unused variable 'factln' declared at (1) pymc/flib.f:3706.29: DOUBLE PRECISION gammln, factln, psi 1 Warning: Unused variable 'gammln' declared at (1) pymc/flib.f:3836.29: DOUBLE PRECISION factln 1 Warning: Unused variable 'factln' declared at (1) pymc/flib.f:4039.26: DOUBLE PRECISION psi 1 Warning: Unused variable 'psi' declared at (1) pymc/flib.f:4266.29: DOUBLE PRECISION gammln, psi 1 Warning: Unused variable 'gammln' declared at (1) pymc/flib.f:4332.29: DOUBLE PRECISION gammln, psi 1 Warning: Unused variable 'gammln' declared at (1) pymc/flib.f:5184.35: DOUBLE PRECISION like, factln, infinity, sump 1 Warning: Unused variable 'factln' declared at (1) pymc/flib.f:5186.23: INTEGER i,j,n_tmp 1 Warning: Unused variable 'n_tmp' declared at (1) pymc/flib.f:5434.26: DOUBLE PRECISION tmp 1 Warning: Unused variable 'tmp' declared at (1) pymc/flib.f:5488.25: DOUBLE PRECISION i0 1 Warning: Unused variable 'i0' declared at (1) pymc/flib.f:5481.26: DOUBLE PRECISION tmp 1 Warning: Unused variable 'tmp' declared at (1) pymc/flib.f:5535.25: DOUBLE PRECISION i0 1 Warning: Unused variable 'i0' declared at (1) pymc/flib.f:5528.26: DOUBLE PRECISION tmp 1 Warning: Unused variable 'tmp' declared at (1) pymc/flib.f: In function 'elgs': pymc/flib.f:4882:0: warning: 'k' may be used uninitialized in this function [-Wmaybe-uninitialized] K = I ^ pymc/flib.f: In function 'exponweib_gl': pymc/flib.f:778:0: warning: 'nc' may be used uninitialized in this function [-Wmaybe-uninitialized] do i = 1,nc ^ pymc/flib.f: In function 'exponweib_gs': pymc/flib.f:994:0: warning: 'nc' may be used uninitialized in this function [-Wmaybe-uninitialized] do i = 1,nc ^ gfortran48:f77: pymc/histogram.f gfortran48:f77: pymc/flib_blas.f pymc/flib_blas.f:202.25: DOUBLE PRECISION PI 1 Warning: Unused variable 'pi' declared at (1) gfortran48:f77: pymc/blas_wrap.f gfortran48:f77: pymc/math.f pymc/math.f:396.6: DOUBLE PRECISION FUNCTION DERF(X) 1 Warning: 'derf' declared at (1) is also the name of an intrinsic. It can only be called via an explicit interface or if declared EXTERNAL. pymc/math.f:417.6: DOUBLE PRECISION FUNCTION DERFC(X) 1 Warning: 'derfc' declared at (1) is also the name of an intrinsic. It can only be called via an explicit interface or if declared EXTERNAL. gfortran48:f77: pymc/gibbsit.f pymc/gibbsit.f:2160.5: 215 IF (R .GT. .5898437) GO TO 220 1 Warning: Label 215 at (1) defined but not used pymc/gibbsit.f:2077.5: 115 IF (R .GT. .5898437) GO TO 120 1 Warning: Label 115 at (1) defined but not used pymc/gibbsit.f:2064.5: 15 IF (KFLAG.GE.1) GO TO 30 1 Warning: Label 15 at (1) defined but not used pymc/gibbsit.f:1204.48: cutpt = empquant(original,iteracnt,qhat,work) 1 Warning: Type mismatch in argument 'work' at (1); passed INTEGER(4) to REAL(8) gfortran48:f77: build/src.freebsd-9.1-RELEASE-p19-i386-2.7/pymc/flib-f2pywrappers.f /usr/local/bin/gfortran48 -Wall build/temp.freebsd-9.1-RELEASE-p19-i386-2.7/cephes/i0.o build/temp.freebsd-9.1-RELEASE-p19-i386-2.7/cephes/c2f.o build/temp.freebsd-9.1-RELEASE-p19-i386-2.7/cephes/chbevl.o build/temp.freebsd-9.1-RELEASE-p19-i386-2.7/build/src.freebsd-9.1-RELEASE-p19-i386-2.7/pymc/flibmodule.o build/temp.freebsd-9.1-RELEASE-p19-i386-2.7/build/src.freebsd-9.1-RELEASE-p19-i386-2.7/fortranobject.o build/temp.freebsd-9.1-RELEASE-p19-i386-2.7/pymc/flib.o build/temp.freebsd-9.1-RELEASE-p19-i386-2.7/pymc/histogram.o build/temp.freebsd-9.1-RELEASE-p19-i386-2.7/pymc/flib_blas.o build/temp.freebsd-9.1-RELEASE-p19-i386-2.7/pymc/blas_wrap.o build/temp.freebsd-9.1-RELEASE-p19-i386-2.7/pymc/math.o build/temp.freebsd-9.1-RELEASE-p19-i386-2.7/pymc/gibbsit.o build/temp.freebsd-9.1-RELEASE-p19-i386-2.7/build/src.freebsd-9.1-RELEASE-p19-i386-2.7/pymc/flib-f2pywrappers.o -L/usr/local/lib -L/usr/local/lib/gcc48/gcc/i386-portbld-freebsd9.1/4.8.3 -L/usr/local/lib -llapack -lblas -llapack -lp ython2.7 -lgfortran -o build/lib.freebsd-9.1-RELEASE-p19-i386-2.7/pymc/flib.so building 'pymc.LazyFunction' extension compiling C sources C compiler: cc -DNDEBUG -O2 -pipe -fno-strict-aliasing -fPIC compile options: '-I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include/python2.7 -c' cc: pymc/LazyFunction.c In file included from /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1761, from /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:17, from pymc/LazyFunction.c:255: /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: #warning "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" cc -shared -O2 -pipe -fno-strict-aliasing build/temp.freebsd-9.1-RELEASE-p19-i386-2.7/pymc/LazyFunction.o -L/usr/local/lib -lpython2.7 -o build/lib.freebsd-9.1-RELEASE-p19-i386-2.7/pymc/LazyFunction.so building 'pymc.Container_values' extension compiling C sources C compiler: cc -DNDEBUG -O2 -pipe -fno-strict-aliasing -fPIC compile options: '-I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include/python2.7 -c' cc: pymc/Container_values.c In file included from /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1761, from /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:17, from pymc/Container_values.c:254: /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: #warning "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" cc -shared -O2 -pipe -fno-strict-aliasing build/temp.freebsd-9.1-RELEASE-p19-i386-2.7/pymc/Container_values.o -L/usr/local/lib -lpython2.7 -o build/lib.freebsd-9.1-RELEASE-p19-i386-2.7/pymc/Container_values.so building 'pymc.gp.linalg_utils' extension compiling C sources C compiler: cc -DNDEBUG -O2 -pipe -fno-strict-aliasing -fPIC creating build/temp.freebsd-9.1-RELEASE-p19-i386-2.7/build/src.freebsd-9.1-RELEASE-p19-i386-2.7/pymc/gp compile options: '-DATLAS_WITHOUT_LAPACK -Ibuild/src.freebsd-9.1-RELEASE-p19-i386-2.7 -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include/python2.7 -c' cc: build/src.freebsd-9.1-RELEASE-p19-i386-2.7/pymc/gp/linalg_utilsmodule.c In file included from /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1761, from /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:17, from /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/arrayobject.h:4, from build/src.freebsd-9.1-RELEASE-p19-i386-2.7/fortranobject.h:13, from build/src.freebsd-9.1-RELEASE-p19-i386-2.7/pymc/gp/linalg_utilsmodule.c:18: /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: #warning "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" cc: build/src.freebsd-9.1-RELEASE-p19-i386-2.7/fortranobject.c In file included from /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1761, from /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:17, from /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/arrayobject.h:4, from build/src.freebsd-9.1-RELEASE-p19-i386-2.7/fortranobject.h:13, from build/src.freebsd-9.1-RELEASE-p19-i386-2.7/fortranobject.c:2: /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: #warning "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" compiling Fortran sources Fortran f77 compiler: /usr/local/bin/gfortran48 -Wall -ffixed-form -fno-second-underscore -fPIC -O3 -funroll-loops Fortran f90 compiler: /usr/local/bin/gfortran48 -Wall -fno-second-underscore -fPIC -O3 -funroll-loops Fortran fix compiler: /usr/local/bin/gfortran48 -Wall -ffixed-form -fno-second-underscore -Wall -fno-second-underscore -fPIC -O3 -funroll-loops creating build/temp.freebsd-9.1-RELEASE-p19-i386-2.7/pymc/gp compile options: '-DATLAS_WITHOUT_LAPACK -Ibuild/src.freebsd-9.1-RELEASE-p19-i386-2.7 -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include/python2.7 -c' gfortran48:f77: pymc/gp/linalg_utils.f pymc/gp/linalg_utils.f:151.56: SUBROUTINE gp_array_logp(x, mu, sig, n, like, info) 1 Warning: Unused dummy argument 'info' at (1) gfortran48:f77: pymc/blas_wrap.f /usr/local/bin/gfortran48 -Wall build/temp.freebsd-9.1-RELEASE-p19-i386-2.7/build/src.freebsd-9.1-RELEASE-p19-i386-2.7/pymc/gp/linalg_utilsmodule.o build/temp.freebsd-9.1-RELEASE-p19-i386-2.7/build/src.freebsd-9.1-RELEASE-p19-i386-2.7/fortranobject.o build/temp.freebsd-9.1-RELEASE-p19-i386-2.7/pymc/gp/linalg_utils.o build/temp.freebsd-9.1-RELEASE-p19-i386-2.7/pymc/blas_wrap.o -L/usr/local/lib -L/usr/local/lib/gcc48/gcc/i386-portbld-freebsd9.1/4.8.3 -L/usr/local/lib -llapack -lblas -llapack -lpython2.7 -lgfortran -o build/lib.freebsd-9.1-RELEASE-p19-i386-2.7/pymc/gp/linalg_utils.so /usr/lib/crt1.o: In function `_start1': crt1_c.c:(.text+0xa3): undefined reference to `main' collect2: error: ld returned 1 exit status /usr/lib/crt1.o: In function `_start1': crt1_c.c:(.text+0xa3): undefined reference to `main' collect2: error: ld returned 1 exit status error: Command "/usr/local/bin/gfortran48 -Wall build/temp.freebsd-9.1-RELEASE-p19-i386-2.7/build/src.freebsd-9.1-RELEASE-p19-i386-2.7/pymc/gp/linalg_utilsmodule.o build/temp.freebsd-9.1-RELEASE-p19-i386-2.7/build/src.freebsd-9.1-RELEASE-p19-i386-2.7/fortranobject.o build/temp.freebsd-9.1-RELEASE-p19-i386-2.7/pymc/gp/linalg_utils.o build/temp.freebsd-9.1-RELEASE-p19-i386-2.7/pymc/blas_wrap.o -L/usr/local/lib -L/usr/local/lib/gcc48/gcc/i386-portbld-freebsd9.1/4.8.3 -L/usr/local/lib -llapack -lblas -llapack -lpython2.7 -lgfortran -o build/lib.freebsd-9.1-RELEASE-p19-i386-2.7/pymc/gp/linalg_utils.so" failed with exit status 1 *** [do-build] Error code 1 Stop in /usr/ports/math/py-pymc.
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