From nobody Thu Oct 5 14:49:20 2023 X-Original-To: python@mlmmj.nyi.freebsd.org Received: from mx1.freebsd.org (mx1.freebsd.org [IPv6:2610:1c1:1:606c::19:1]) by mlmmj.nyi.freebsd.org (Postfix) with ESMTP id 4S1ZFr6ZyYz4wv1N for ; Thu, 5 Oct 2023 14:49:20 +0000 (UTC) (envelope-from pkg-fallout@FreeBSD.org) Received: from mxrelay.nyi.freebsd.org (mxrelay.nyi.freebsd.org [IPv6:2610:1c1:1:606c::19:3]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) key-exchange X25519 server-signature RSA-PSS (4096 bits) server-digest SHA256 client-signature RSA-PSS (4096 bits) client-digest SHA256) (Client CN "mxrelay.nyi.freebsd.org", Issuer "R3" (verified OK)) by mx1.freebsd.org (Postfix) with ESMTPS id 4S1ZFr4ydfz4THK for ; Thu, 5 Oct 2023 14:49:20 +0000 (UTC) (envelope-from pkg-fallout@FreeBSD.org) ARC-Seal: i=1; s=dkim; d=freebsd.org; t=1696517360; a=rsa-sha256; cv=none; b=rhupF9SkoItjlE0yovk4mRhuf4R9wLUuZjpV0jQS1aSCYW0oSqiCZi2P/OvONJOm5CRZGU BFqTDGjEYv/Se2+WqH+sXPY4XNmY46vNcCmeou3XxhUEZrYWSXlEbgJEtKjzfXNm/v3mka qchxA9o6LSYuxmC95w0hkuShgzykzGijntto55HuWhdvHulxBln5XwYpuRHX7qbY2fIweq efXl5Hm1U03tfklubS+WniZw4kgzCKw3FM4p3JwXjTR+tnK5tcBrkTxeEBYOf63+r+hobf s7NqZo02bOoNDhuM59jimo/cBq6GKeadc+rkfeun7GLnYyNa7ZJ1yjJTuxuDkA== ARC-Authentication-Results: i=1; mx1.freebsd.org; none ARC-Message-Signature: i=1; a=rsa-sha256; c=relaxed/relaxed; d=freebsd.org; s=dkim; t=1696517360; h=from:from:reply-to:subject:subject:date:date:message-id:message-id: to:to:cc:cc; bh=hrom2ZeNEJ18Deekrfc8ffClinC83pHOenmDptjg2XU=; b=OPpeEnSTttbvDt6su9OA7awcBnFQGBgTNCEshGjnPuLdLixroIMPZILIaLnTnuRh666c4G blMsfignjjW/gWHh8iZLCk/Zbcuz4BHfsDLz4wwjlvjRNytiGwa6P93l0I7qgYdp1UVBB0 65jWZSr0FN2GS69jCvVuYD17gt4/OMmqgrOgrrDeH5H8bwPUD41G1hKsPXeMOpyG4BLu4j LLP8sBD+BUZVrbWPnwE9nvsp9X1OJVm/XyZ5cTjkyup/pjZTphWZwL4PwxISUhlGlyaZ3k gXavM1EPR+i31JYBs2Lx3wOQ0GIUmw4Qs6p5ZVwySv23JZPsp+maaRESghMQFA== Received: from beefy16.nyi.freebsd.org (beefy16.nyi.freebsd.org [IPv6:2610:1c1:1:6080::16:1f]) by mxrelay.nyi.freebsd.org (Postfix) with ESMTP id 4S1ZFr3vKdz1NWn for ; Thu, 5 Oct 2023 14:49:20 +0000 (UTC) (envelope-from pkg-fallout@FreeBSD.org) Received: from root (uid 0) (envelope-from pkg-fallout@FreeBSD.org) id 3819 by beefy16.nyi.freebsd.org (DragonFly Mail Agent v0.13+ on beefy16.nyi.freebsd.org); Thu, 05 Oct 2023 14:49:20 +0000 To: python@FreeBSD.org Subject: [package - 132amd64-default][science/py-scipy] Failed for py39-scipy-1.11.1 in configure/runaway Cc: pkg-fallout@FreeBSD.org Date: Thu, 05 Oct 2023 14:49:20 +0000 Message-Id: <651eccf0.3819.435f3a7c@beefy16.nyi.freebsd.org> From: List-Id: FreeBSD-specific Python issues List-Archive: https://lists.freebsd.org/archives/freebsd-python List-Help: List-Post: List-Subscribe: List-Unsubscribe: Sender: owner-freebsd-python@freebsd.org X-BeenThere: freebsd-python@freebsd.org You are receiving this mail as a port that you maintain is failing to build on the FreeBSD package build server. Please investigate the failure and submit a PR to fix build. Maintainer: python@FreeBSD.org Log URL: https://pkg-status.freebsd.org/beefy16/data/132amd64-default/ecb3f8a4918b/logs/py39-scipy-1.11.1.log Build URL: https://pkg-status.freebsd.org/beefy16/build.html?mastername=132amd64-default&build=ecb3f8a4918b Log: =>> Building science/py-scipy build started at Thu Oct 5 12:36:46 UTC 2023 port directory: /usr/ports/science/py-scipy package name: py39-scipy-1.11.1 building for: FreeBSD 132amd64-default-job-05 13.2-RELEASE-p4 FreeBSD 13.2-RELEASE-p4 amd64 maintained by: python@FreeBSD.org Makefile ident: Poudriere version: 3.2.8-23-ga7f8d188 Host OSVERSION: 1500000 Jail OSVERSION: 1302001 Job Id: 05 ---Begin Environment--- SHELL=/bin/csh OSVERSION=1302001 UNAME_v=FreeBSD 13.2-RELEASE-p4 UNAME_r=13.2-RELEASE-p4 BLOCKSIZE=K MAIL=/var/mail/root MM_CHARSET=UTF-8 LANG=C.UTF-8 STATUS=1 HOME=/root PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin LOCALBASE=/usr/local USER=root LIBEXECPREFIX=/usr/local/libexec/poudriere POUDRIERE_VERSION=3.2.8-23-ga7f8d188 MASTERMNT=/usr/local/poudriere/data/.m/132amd64-default/ref POUDRIERE_BUILD_TYPE=bulk PACKAGE_BUILDING=yes SAVED_TERM= PWD=/usr/local/poudriere/data/.m/132amd64-default/ref/.p/pool P_PORTS_FEATURES=FLAVORS SELECTED_OPTIONS MASTERNAME=132amd64-default SCRIPTPREFIX=/usr/local/share/poudriere OLDPWD=/usr/local/poudriere/data/.m/132amd64-default/ref/.p SCRIPTPATH=/usr/local/share/poudriere/bulk.sh POUDRIEREPATH=/usr/local/bin/poudriere ---End Environment--- ---Begin Poudriere Port Flags/Env--- PORT_FLAGS= PKGENV= FLAVOR=py39 DEPENDS_ARGS= MAKE_ARGS= FLAVOR=py39 ---End Poudriere Port Flags/Env--- ---Begin OPTIONS List--- ===> The following configuration options are available for py39-scipy-1.11.1: DOCS=on: Build and/or install documentation ===> Use 'make config' to modify these settings ---End OPTIONS List--- --MAINTAINER-- python@FreeBSD.org --End MAINTAINER-- --CONFIGURE_ARGS-- --End CONFIGURE_ARGS-- --CONFIGURE_ENV-- F77="gfortran12" F90="gfortran12" FC="gfortran12" FFLAGS="-O -std=legacy -Wl,-rpath=/usr/local/lib/gcc12" F90FLAGS="-O -std=legacy -Wl,-rpath=/usr/local/lib/gcc12" FCFLAGS="-Wl,-rpath=/usr/local/lib/gcc12" PYTHON="/usr/local/bin/python3.9" XDG_DATA_HOME=/wrkdirs/usr/ports/science/py-scipy/work-py39 XDG_CONFIG_HOME=/wrkdirs/usr/ports/science/py-scipy/work-py39 XDG_CACHE_HOME=/wrkdirs/usr/ports/science/py-scipy/work-py39/.cache HOME=/wrkdirs/usr/ports/science/py-scipy/work-py39 TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/science/py-scipy/work-py39/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/science/py-scipy/work-py39/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig SHELL=/bin/sh CONFIG_SHELL=/bin/sh --End CONFIGURE_ENV-- --MAKE_ENV-- F77="gfortran12" F90="gfortran12" FC="gfortran12" FFLAGS="-O -std=legacy -Wl,-rpath=/usr/local/lib/gcc12" F90FLAGS="-O -std=legacy -Wl,-rpath=/usr/local/lib/gcc12" FCFLAGS="-Wl,-rpath=/usr/local/lib/gcc12" XDG_DATA_HOME=/wrkdirs/usr/ports/science/py-scipy/work-py39 XDG_CONFIG_HOME=/wrkdirs/usr/ports/science/py-scipy/work-py39 XDG_CACHE_HOME=/wrkdirs/usr/ports/science/py-scipy/work-py39/.cache HOME=/wrkdirs/usr/ports/science/py-scipy/work-py39 TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/science/py-scipy/work-py39/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/science/py-scipy/work-py39/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES ADDR2LINE="/usr/local/bin/addr2line" AR="/usr/local/bin/ar" AS="/usr/local/bin/as" CPPFILT="/usr/local/bin/c++filt" GPROF="/usr/local/bin/gprof" LD="/usr/local/bin/ld" NM="/usr/l ocal/bin/nm" OBJCOPY="/usr/local/bin/objcopy" OBJDUMP="/usr/local/bin/objdump" RANLIB="/usr/local/bin/ranlib" READELF="/usr/local/bin/readelf" SIZE="/usr/local/bin/size" STRINGS="/usr/local/bin/strings" LDSHARED="cc -shared" PYTHONDONTWRITEBYTECODE= PYTHONOPTIMIZE= PREFIX=/usr/local LOCALBASE=/usr/local CC="cc" CFLAGS="-O2 -pipe -fstack-protector-strong -fno-strict-aliasing " CPP="cpp" CPPFLAGS="" LDFLAGS=" -shared -Wl,-rpath=/usr/local/lib/gcc12 -L/usr/local/lib/gcc12 -B/usr/local/bin -fstack-protector-strong " LIBS="" CXX="c++" CXXFLAGS="-O2 -pipe -fstack-protector-strong -fno-strict-aliasing " MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" --End MAKE_ENV-- --PLIST_SUB-- PORTDOCS="" PYTHON_INCLUDEDIR=include/python3.9 PYTHON_LIBDIR=lib/python3.9 PYTHON_PLATFORM=freebsd13 PYTHON_SITELIBDIR=lib/python3.9/site-packages PYTHON_SUFFIX=39 PYTHON_EXT_SUFFIX=.cpython-39 PYTHON_VER=3.9 PYTHON_VERSION=python3.9 PYTHON2="@comment " PYTHON3="" OSREL=13.2 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib DOCSDIR="share/doc/py39-scipy" EXAMPLESDIR="share/examples/py39-scipy" DATADIR="share/py39-scipy" WWWDIR="www/py39-scipy" ETCDIR="etc/py39-scipy" --End PLIST_SUB-- --SUB_LIST-- PYTHON_INCLUDEDIR=/usr/local/include/python3.9 PYTHON_LIBDIR=/usr/local/lib/python3.9 PYTHON_PLATFORM=freebsd13 PYTHON_SITELIBDIR=/usr/local/lib/python3.9/site-packages PYTHON_SUFFIX=39 PYTHON_EXT_SUFFIX=.cpython-39 PYTHON_VER=3.9 PYTHON_VERSION=python3.9 PYTHON2="@comment " PYTHON3="" PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/py39-scipy DOCSDIR=/usr/local/share/doc/py39-scipy EXAMPLESDIR=/usr/local/share/examples/py39-scipy WWWDIR=/usr/local/www/py39-scipy ETCDIR=/usr/local/etc/py39-scipy --End SUB_LIST-- ---Begin make.conf--- USE_PACKAGE_DEPENDS=yes BATCH=yes WRKDIRPREFIX=/wrkdirs PORTSDIR=/usr/ports PACKAGES=/packages DISTDIR=/distfiles PACKAGE_BUILDING=yes PACKAGE_BUILDING_FLAVORS=yes #### /usr/local/etc/poudriere.d/make.conf #### # XXX: We really need this but cannot use it while 'make checksum' does not # try the next mirror on checksum failure. It currently retries the same # failed mirror and then fails rather then trying another. It *does* # try the next if the size is mismatched though. #MASTER_SITE_FREEBSD=yes # Build ALLOW_MAKE_JOBS_PACKAGES with 2 jobs MAKE_JOBS_NUMBER=3 #### /usr/ports/Mk/Scripts/ports_env.sh #### _CCVERSION_921dbbb2=FreeBSD clang version 14.0.5 (https://github.com/llvm/llvm-project.git llvmorg-14.0.5-0-gc12386ae247c) Target: x86_64-unknown-freebsd13.2 Thread model: posix InstalledDir: /usr/bin _ALTCCVERSION_921dbbb2=none _CXXINTERNAL_acaad9ca=FreeBSD clang version 14.0.5 (https://github.com/llvm/llvm-project.git llvmorg-14.0.5-0-gc12386ae247c) Target: x86_64-unknown-freebsd13.2 Thread model: posix InstalledDir: /usr/bin "/usr/bin/ld" "--eh-frame-hdr" "-dynamic-linker" "/libexec/ld-elf.so.1" "--hash-style=both" "--enable-new-dtags" "-o" "a.out" "/usr/lib/crt1.o" "/usr/lib/crti.o" "/usr/lib/crtbegin.o" "-L/usr/lib" "/dev/null" "-lc++" "-lm" "-lgcc" "--as-needed" "-lgcc_s" "--no-as-needed" "-lc" "-lgcc" "--as-needed" "-lgcc_s" "--no-as-needed" "/usr/lib/crtend.o" "/usr/lib/crtn.o" CC_OUTPUT_921dbbb2_58173849=yes CC_OUTPUT_921dbbb2_9bdba57c=yes CC_OUTPUT_921dbbb2_6a4fe7f5=yes CC_OUTPUT_921dbbb2_6bcac02b=yes CC_OUTPUT_921dbbb2_67d20829=yes CC_OUTPUT_921dbbb2_bfa62e83=yes CC_OUTPUT_921dbbb2_f0b4d593=yes CC_OUTPUT_921dbbb2_308abb44=yes CC_OUTPUT_921dbbb2_f00456e5=yes CC_OUTPUT_921dbbb2_65ad290d=yes CC_OUTPUT_921dbbb2_f2776b26=yes CC_OUTPUT_921dbbb2_53255a77=yes CC_OUTPUT_921dbbb2_911cfe02=yes CC_OUTPUT_921dbbb2_b2657cc3=yes CC_OUTPUT_921dbbb2_380987f7=yes CC_OUTPUT_921dbbb2_160933ec=yes CC_OUTPUT_921dbbb2_fb62803b=yes CC_OUTPUT_921dbbb2_af59ad06=yes CC_OUTPUT_921dbbb2_a15f3fcf=yes _OBJC_CCVERSION_921dbbb2=FreeBSD clang version 14.0.5 (https://github.com/llvm/llvm-project.git llvmorg-14.0.5-0-gc12386ae247c) Target: x86_64-unknown-freebsd13.2 Thread model: posix InstalledDir: /usr/bin _OBJC_ALTCCVERSION_921dbbb2=none ARCH=amd64 OPSYS=FreeBSD _OSRELEASE=13.2-RELEASE-p4 OSREL=13.2 OSVERSION=1302001 PYTHONBASE=/usr/local HAVE_COMPAT_IA32_KERN=YES CONFIGURE_MAX_CMD_LEN=524288 HAVE_PORTS_ENV=1 #### Misc Poudriere #### GID=0 UID=0 ---End make.conf--- --Resource limits-- cpu time (seconds, -t) unlimited file size (512-blocks, -f) unlimited data seg size (kbytes, -d) 33554432 stack size (kbytes, -s) 524288 core file size (512-blocks, -c) unlimited max memory size (kbytes, -m) unlimited locked memory (kbytes, -l) unlimited max user processes (-u) 89999 open files (-n) 1024 virtual mem size (kbytes, -v) unlimited swap limit (kbytes, -w) unlimited socket buffer size (bytes, -b) unlimited pseudo-terminals (-p) unlimited kqueues (-k) unlimited umtx shared locks (-o) unlimited --End resource limits-- =================================================== ===> License BSD3CLAUSE accepted by the user =========================================================================== =================================================== ===> py39-scipy-1.11.1 depends on file: /usr/local/sbin/pkg - not found ===> Installing existing package /packages/All/pkg-1.20.7.pkg [132amd64-default-job-05] Installing pkg-1.20.7... [132amd64-default-job-05] Extracting pkg-1.20.7: .......... done ===> py39-scipy-1.11.1 depends on file: /usr/local/sbin/pkg - found ===> Returning to build of py39-scipy-1.11.1 =========================================================================== =================================================== =========================================================================== =================================================== ===> License BSD3CLAUSE accepted by the user ===> Fetching all distfiles required by py39-scipy-1.11.1 for building =========================================================================== =================================================== ===> License BSD3CLAUSE accepted by the user ===> Fetching all distfiles required by py39-scipy-1.11.1 for building => SHA256 Checksum OK for scipy-1.11.1.tar.gz. => SHA256 Checksum OK for scipy-html-1.11.1.zip. =========================================================================== =================================================== =========================================================================== =================================================== ===> License BSD3CLAUSE accepted by the user ===> Fetching all distfiles required by py39-scipy-1.11.1 for building ===> Extracting for py39-scipy-1.11.1 => SHA256 Checksum OK for scipy-1.11.1.tar.gz. => SHA256 Checksum OK for scipy-html-1.11.1.zip. =========================================================================== =================================================== =========================================================================== =================================================== ===> Patching for py39-scipy-1.11.1 ===> Applying FreeBSD patches for py39-scipy-1.11.1 from /usr/ports/science/py-scipy/files =========================================================================== =================================================== ===> py39-scipy-1.11.1 depends on package: py39-numpy>=1.16,1<1.26,1 - not found ===> Installing existing package /packages/All/py39-numpy-1.25.0_1,1.pkg [132amd64-default-job-05] Installing py39-numpy-1.25.0_1,1... [132amd64-default-job-05] `-- Installing gcc12-12.2.0_6... [132amd64-default-job-05] | `-- Installing binutils-2.40_4,1... [132amd64-default-job-05] | | `-- Installing gettext-runtime-0.22_1... [132amd64-default-job-05] | | `-- Installing indexinfo-0.3.1... [132amd64-default-job-05] | | `-- Extracting indexinfo-0.3.1: .... done [132amd64-default-job-05] | | `-- Extracting gettext-runtime-0.22_1: .......... done ===> Returning to build of py39-scipy-1.11.1 ===> py39-scipy-1.11.1 depends on package: unzip>0 - not found ===> Installing existing package /packages/All/unzip-6.0_8.pkg [132amd64-default-job-05] Installing unzip-6.0_8... [132amd64-default-job-05] Extracting unzip-6.0_8: .......... done ===> py39-scipy-1.11.1 depends on package: unzip>0 - found ===> Returning to build of py39-scipy-1.11.1 ===> py39-scipy-1.11.1 depends on executable: gfortran12 - found ===> py39-scipy-1.11.1 depends on executable: cython-3.9 - not found ===> Installing existing package /packages/All/py39-cython-0.29.36.pkg [132amd64-default-job-05] Installing py39-cython-0.29.36... [132amd64-default-job-05] Extracting py39-cython-0.29.36: .......... done ===> py39-scipy-1.11.1 depends on executable: cython-3.9 - found ===> Returning to build of py39-scipy-1.11.1 ===> py39-scipy-1.11.1 depends on package: py39-setuptools>=63.1.0 - found ===> py39-scipy-1.11.1 depends on file: /usr/local/bin/python3.9 - found ===> py39-scipy-1.11.1 depends on file: /usr/local/bin/as - found =========================================================================== =================================================== ===> py39-scipy-1.11.1 depends on shared library: libblas.so - not found ===> Installing existing package /packages/All/blas-3.11.0_1.pkg [132amd64-default-job-05] Installing blas-3.11.0_1... [132amd64-default-job-05] Extracting blas-3.11.0_1: ........ done ===> py39-scipy-1.11.1 depends on shared library: libblas.so - found (/usr/local/lib/libblas.so) ===> Returning to build of py39-scipy-1.11.1 ===> py39-scipy-1.11.1 depends on shared library: libopenblas.so - found (/usr/local/lib/libopenblas.so) =========================================================================== =================================================== ===> Configuring for py39-scipy-1.11.1 setup.py:390: UserWarning: Unrecognized setuptools command ('config --fcompiler=gnu95'), proceeding with generating Cython sources and expanding templates warnings.warn("Unrecognized setuptools command ('{}'), proceeding with " setup.py:506: DeprecationWarning: `numpy.distutils` is deprecated since NumPy 1.23.0, as a result of the deprecation of `distutils` itself. It will be removed for Python >= 3.12. For older Python versions it will remain present. It is recommended to use `setuptools < 60.0` for those Python versions. For more details, see: https://numpy.org/devdocs/reference/distutils_status_migration.html from numpy.distutils.core import setup Running from SciPy source directory. Running scipy/linalg/_generate_pyx.py Running scipy/stats/_generate_pyx.py Running scipy/special/_generate_pyx.py Processing scipy/interpolate/_ppoly.pyx Processing scipy/interpolate/_bspl.pyx Processing scipy/interpolate/_rgi_cython.pyx Processing scipy/interpolate/interpnd.pyx Processing scipy/linalg/_matfuncs_expm.pyx.in Processing scipy/linalg/_solve_toeplitz.pyx Processing scipy/linalg/_cythonized_array_utils.pyx Processing scipy/linalg/_decomp_lu_cython.pyx Processing scipy/linalg/cython_lapack.pyx Processing scipy/linalg/cython_blas.pyx Processing scipy/linalg/_matfuncs_sqrtm_triu.pyx Processing scipy/linalg/_decomp_update.pyx.in Processing scipy/stats/_qmc_cy.pyx Processing scipy/stats/_sobol.pyx Processing scipy/stats/_stats.pyx Processing scipy/stats/_biasedurn.pyx Processing scipy/stats/_boost/src/ncx2_ufunc.pyx Processing scipy/stats/_boost/src/beta_ufunc.pyx Processing scipy/stats/_boost/src/skewnorm_ufunc.pyx Processing scipy/stats/_boost/src/hypergeom_ufunc.pyx Processing scipy/stats/_boost/src/ncf_ufunc.pyx Processing scipy/stats/_boost/src/binom_ufunc.pyx Processing scipy/stats/_boost/src/nbinom_ufunc.pyx Processing scipy/stats/_boost/src/nct_ufunc.pyx Processing scipy/stats/_boost/src/invgauss_ufunc.pyx Processing scipy/stats/_rcont/rcont.pyx Processing scipy/stats/_levy_stable/levyst.pyx Processing scipy/stats/_unuran/unuran_wrapper.pyx Processing scipy/spatial/_qhull.pyx Processing scipy/spatial/_hausdorff.pyx Processing scipy/spatial/_ckdtree.pyx Processing scipy/spatial/_voronoi.pyx Processing scipy/spatial/transform/_rotation.pyx Processing scipy/cluster/_hierarchy.pyx Processing scipy/cluster/_vq.pyx Processing scipy/cluster/_optimal_leaf_ordering.pyx Processing scipy/special/cython_special.pyx Processing scipy/special/_ufuncs_cxx.pyx Processing scipy/special/_test_internal.pyx Processing scipy/special/_ufuncs.pyx Processing scipy/special/_ellip_harm_2.pyx Processing scipy/special/_comb.pyx Processing scipy/sparse/_csparsetools.pyx.in Processing scipy/sparse/csgraph/_shortest_path.pyx Processing scipy/sparse/csgraph/_tools.pyx Processing scipy/sparse/csgraph/_flow.pyx Processing scipy/sparse/csgraph/_reordering.pyx Processing scipy/sparse/csgraph/_min_spanning_tree.pyx Processing scipy/sparse/csgraph/_traversal.pyx Processing scipy/sparse/csgraph/_matching.pyx Processing scipy/io/matlab/_mio_utils.pyx Processing scipy/io/matlab/_mio5_utils.pyx Processing scipy/io/matlab/_streams.pyx Processing scipy/_lib/_ccallback_c.pyx Processing scipy/_lib/messagestream.pyx Processing scipy/_lib/_test_deprecation_call.pyx Processing scipy/_lib/_test_deprecation_def.pyx Processing scipy/ndimage/src/_ni_label.pyx Processing scipy/ndimage/src/_cytest.pyx Processing scipy/signal/_spectral.pyx Processing scipy/signal/_upfirdn_apply.pyx Processing scipy/signal/_max_len_seq_inner.pyx Processing scipy/signal/_peak_finding_utils.pyx Processing scipy/signal/_sosfilt.pyx Processing scipy/optimize/_group_columns.pyx Processing scipy/optimize/_bglu_dense.pyx Processing scipy/optimize/tnc/_moduleTNC.pyx Processing scipy/optimize/_trlib/_trlib.pyx Processing scipy/optimize/_lsq/givens_elimination.pyx Processing scipy/optimize/cython_optimize/_zeros.pyx.in Processing scipy/optimize/_highs/cython/src/_highs_wrapper.pyx Processing scipy/optimize/_highs/cython/src/_highs_constants.pyx Processing scipy/fftpack/convolve.pyx /usr/local/lib/python3.9/site-packages/setuptools/config/_apply_pyprojecttoml.py:196: UserWarning: `install_requires` overwritten in `pyproject.toml` (dependencies) warnings.warn(msg) Cythonizing sources INFO: lapack_opt_info: INFO: lapack_armpl_info: INFO: customize UnixCCompiler INFO: C compiler: cc -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -fPIC creating /tmp/tmp0ptikcai/tmp creating /tmp/tmp0ptikcai/tmp/tmp0ptikcai INFO: compile options: '-MMD -MF /tmp/tmp0ptikcai/file.c.d -c' INFO: cc: /tmp/tmp0ptikcai/file.c INFO: libraries armpl_lp64_mp not found in ['/usr/lib', '/usr/local/lib', '/usr/local/lib/gcc12/gcc/x86_64-portbld-freebsd13.2/12.2.0/../../../'] INFO: NOT AVAILABLE INFO: INFO: lapack_mkl_info: INFO: libraries mkl_rt not found in ['/usr/lib', '/usr/local/lib', '/usr/local/lib/gcc12/gcc/x86_64-portbld-freebsd13.2/12.2.0/../../../'] INFO: NOT AVAILABLE INFO: INFO: lapack_ssl2_info: INFO: libraries fjlapackexsve not found in ['/usr/lib', '/usr/local/lib', '/usr/local/lib/gcc12/gcc/x86_64-portbld-freebsd13.2/12.2.0/../../../'] INFO: NOT AVAILABLE INFO: INFO: openblas_lapack_info: INFO: C compiler: cc -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -fPIC creating /tmp/tmpgir_oviq/tmp creating /tmp/tmpgir_oviq/tmp/tmpgir_oviq INFO: compile options: '-c' INFO: cc: /tmp/tmpgir_oviq/source.c INFO: cc /tmp/tmpgir_oviq/tmp/tmpgir_oviq/source.o -L/usr/local/lib -L/usr/local/lib/gcc12/gcc/x86_64-portbld-freebsd13.2/12.2.0/../../../ -lopenblas -lgfortran -o /tmp/tmpgir_oviq/a.out INFO: FOUND: INFO: libraries = ['openblas', 'gfortran', 'openblas', 'gfortran'] INFO: library_dirs = ['/usr/local/lib', '/usr/local/lib/gcc12/gcc/x86_64-portbld-freebsd13.2/12.2.0/../../../'] INFO: language = c INFO: define_macros = [('HAVE_CBLAS', None)] INFO: INFO: FOUND: INFO: libraries = ['openblas', 'gfortran', 'openblas', 'gfortran'] INFO: library_dirs = ['/usr/local/lib', '/usr/local/lib/gcc12/gcc/x86_64-portbld-freebsd13.2/12.2.0/../../../'] INFO: language = c INFO: define_macros = [('HAVE_CBLAS', None)] INFO: INFO: blas_opt_info: INFO: blas_armpl_info: INFO: libraries armpl_lp64_mp not found in ['/usr/lib', '/usr/local/lib', '/usr/local/lib/gcc12/gcc/x86_64-portbld-freebsd13.2/12.2.0/../../../'] INFO: NOT AVAILABLE INFO: INFO: blas_mkl_info: INFO: libraries mkl_rt not found in ['/usr/lib', '/usr/local/lib', '/usr/local/lib/gcc12/gcc/x86_64-portbld-freebsd13.2/12.2.0/../../../'] INFO: NOT AVAILABLE INFO: INFO: blas_ssl2_info: INFO: libraries fjlapackexsve not found in ['/usr/lib', '/usr/local/lib', '/usr/local/lib/gcc12/gcc/x86_64-portbld-freebsd13.2/12.2.0/../../../'] INFO: NOT AVAILABLE INFO: INFO: blis_info: INFO: libraries blis not found in ['/usr/lib', '/usr/local/lib', '/usr/local/lib/gcc12/gcc/x86_64-portbld-freebsd13.2/12.2.0/../../../'] INFO: NOT AVAILABLE INFO: INFO: openblas_info: INFO: C compiler: cc -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -fPIC creating /tmp/tmp8xnxfeqa/tmp creating /tmp/tmp8xnxfeqa/tmp/tmp8xnxfeqa INFO: compile options: '-c' INFO: cc: /tmp/tmp8xnxfeqa/source.c INFO: cc /tmp/tmp8xnxfeqa/tmp/tmp8xnxfeqa/source.o -L/usr/local/lib -L/usr/local/lib/gcc12/gcc/x86_64-portbld-freebsd13.2/12.2.0/../../../ -lopenblas -lgfortran -o /tmp/tmp8xnxfeqa/a.out INFO: FOUND: INFO: libraries = ['openblas', 'gfortran', 'openblas', 'gfortran'] INFO: library_dirs = ['/usr/local/lib', '/usr/local/lib/gcc12/gcc/x86_64-portbld-freebsd13.2/12.2.0/../../../'] INFO: language = c INFO: define_macros = [('HAVE_CBLAS', None)] INFO: INFO: FOUND: INFO: libraries = ['openblas', 'gfortran', 'openblas', 'gfortran'] INFO: library_dirs = ['/usr/local/lib', '/usr/local/lib/gcc12/gcc/x86_64-portbld-freebsd13.2/12.2.0/../../../'] INFO: language = c INFO: define_macros = [('HAVE_CBLAS', None)] INFO: =>> Killing runaway build after 7200 seconds with no output