From owner-freebsd-pkg-fallout@freebsd.org Tue Jul 10 02:10:23 2018 Return-Path: Delivered-To: freebsd-pkg-fallout@mailman.ysv.freebsd.org Received: from mx1.freebsd.org (mx1.freebsd.org [IPv6:2610:1c1:1:606c::19:1]) by mailman.ysv.freebsd.org (Postfix) with ESMTP id 56945102E1CA for ; Tue, 10 Jul 2018 02:10:23 +0000 (UTC) (envelope-from pkg-fallout@FreeBSD.org) Received: from mailman.ysv.freebsd.org (mailman.ysv.freebsd.org [IPv6:2001:1900:2254:206a::50:5]) by mx1.freebsd.org (Postfix) with ESMTP id B538775C32 for ; Tue, 10 Jul 2018 02:10:22 +0000 (UTC) (envelope-from pkg-fallout@FreeBSD.org) Received: by mailman.ysv.freebsd.org (Postfix) id 6F2FF102E1C8; Tue, 10 Jul 2018 02:10:22 +0000 (UTC) Delivered-To: pkg-fallout@mailman.ysv.freebsd.org Received: from mx1.freebsd.org (mx1.freebsd.org [IPv6:2610:1c1:1:606c::19:1]) by mailman.ysv.freebsd.org (Postfix) with ESMTP id 392D8102E1C6 for ; Tue, 10 Jul 2018 02:10:22 +0000 (UTC) (envelope-from pkg-fallout@FreeBSD.org) Received: from mxrelay.nyi.freebsd.org (mxrelay.nyi.freebsd.org [IPv6:2610:1c1:1:606c::19:3]) (using TLSv1.2 with cipher ECDHE-RSA-AES256-GCM-SHA384 (256/256 bits)) (Client CN "mxrelay.nyi.freebsd.org", Issuer "Let's Encrypt Authority X3" (verified OK)) by mx1.freebsd.org (Postfix) with ESMTPS id E23A175C2F; Tue, 10 Jul 2018 02:10:21 +0000 (UTC) (envelope-from pkg-fallout@FreeBSD.org) Received: from beefy12.nyi.freebsd.org (beefy12.nyi.freebsd.org [IPv6:2610:1c1:1:6080::16:ef]) (using TLSv1.2 with cipher ECDHE-RSA-AES256-GCM-SHA384 (256/256 bits)) (Client did not present a certificate) by mxrelay.nyi.freebsd.org (Postfix) with ESMTPS id C39E71D661; Tue, 10 Jul 2018 02:10:21 +0000 (UTC) (envelope-from pkg-fallout@FreeBSD.org) Received: from beefy12.nyi.freebsd.org (localhost [127.0.0.1]) by beefy12.nyi.freebsd.org (8.15.2/8.15.2) with ESMTP id w6A2ALk2043468; Tue, 10 Jul 2018 02:10:21 GMT (envelope-from pkg-fallout@FreeBSD.org) Received: (from root@localhost) by beefy12.nyi.freebsd.org (8.15.2/8.15.2/Submit) id w6A2ALcd043462; Tue, 10 Jul 2018 02:10:21 GMT (envelope-from pkg-fallout@FreeBSD.org) Date: Tue, 10 Jul 2018 02:10:21 GMT From: pkg-fallout@FreeBSD.org Message-Id: <201807100210.w6A2ALcd043462@beefy12.nyi.freebsd.org> To: yuri@FreeBSD.org Subject: [package - head-amd64-default][science/libssm] Failed for libssm-1.4.0 in build Cc: pkg-fallout@FreeBSD.org X-BeenThere: freebsd-pkg-fallout@freebsd.org X-Mailman-Version: 2.1.27 Precedence: list List-Id: Fallout logs from package building List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , X-List-Received-Date: Tue, 10 Jul 2018 02:10:23 -0000 You are receiving this mail as a port that you maintain is failing to build on the FreeBSD package build server. Please investigate the failure and submit a PR to fix build. Maintainer: yuri@FreeBSD.org Last committer: yuri@FreeBSD.org Ident: $FreeBSD: head/science/libssm/Makefile 474183 2018-07-08 15:34:16Z yuri $ Log URL: http://beefy12.nyi.freebsd.org/data/head-amd64-default/p474314_s336154/logs/libssm-1.4.0.log Build URL: http://beefy12.nyi.freebsd.org/build.html?mastername=head-amd64-default&build=p474314_s336154 Log: =>> Building science/libssm build started at Tue Jul 10 02:08:37 UTC 2018 port directory: /usr/ports/science/libssm package name: libssm-1.4.0 building for: FreeBSD head-amd64-default-job-19 12.0-CURRENT FreeBSD 12.0-CURRENT 1200072 amd64 maintained by: yuri@FreeBSD.org Makefile ident: $FreeBSD: head/science/libssm/Makefile 474183 2018-07-08 15:34:16Z yuri $ Poudriere version: 3.2.7-1-g7087c444 Host OSVERSION: 1200069 Jail OSVERSION: 1200072 Job Id: 19 !!! Jail is newer than host. (Jail: 1200072, Host: 1200069) !!! !!! This is not supported. !!! !!! Host kernel must be same or newer than jail. !!! !!! Expect build failures. !!! ---Begin Environment--- SHELL=/bin/csh OSVERSION=1200072 UNAME_v=FreeBSD 12.0-CURRENT 1200072 UNAME_r=12.0-CURRENT BLOCKSIZE=K MAIL=/var/mail/root STATUS=1 HOME=/root PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin LOCALBASE=/usr/local USER=root LIBEXECPREFIX=/usr/local/libexec/poudriere POUDRIERE_VERSION=3.2.7-1-g7087c444 MASTERMNT=/usr/local/poudriere/data/.m/head-amd64-default/ref POUDRIERE_BUILD_TYPE=bulk PACKAGE_BUILDING=yes SAVED_TERM= PWD=/usr/local/poudriere/data/.m/head-amd64-default/ref/.p/pool P_PORTS_FEATURES=FLAVORS SELECTED_OPTIONS MASTERNAME=head-amd64-default SCRIPTPREFIX=/usr/local/share/poudriere OLDPWD=/usr/local/poudriere/data/.m/head-amd64-default/ref/.p SCRIPTPATH=/usr/local/share/poudriere/bulk.sh POUDRIEREPATH=/usr/local/bin/poudriere ---End Environment--- ---Begin Poudriere Port Flags/Env--- PORT_FLAGS= PKGENV= FLAVOR= DEPENDS_ARGS= MAKE_ARGS= ---End Poudriere Port Flags/Env--- ---Begin OPTIONS List--- ---End OPTIONS List--- --MAINTAINER-- yuri@FreeBSD.org --End MAINTAINER-- --CONFIGURE_ARGS-- --enable-shared --disable-static --enable-ccp4 --with-mmdb=/usr/local --prefix=/usr/local ${_LATE_CONFIGURE_ARGS} --End CONFIGURE_ARGS-- --CONFIGURE_ENV-- MAKE=gmake XDG_DATA_HOME=/wrkdirs/usr/ports/science/libssm/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/science/libssm/work HOME=/wrkdirs/usr/ports/science/libssm/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/science/libssm/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin SHELL=/bin/sh CONFIG_SHELL=/bin/sh CMAKE_PREFIX_PATH="/usr/local" CONFIG_SITE=/usr/ports/Templates/config.site lt_cv_sys_max_cmd_len=262144 --End CONFIGURE_ENV-- --MAKE_ENV-- XDG_DATA_HOME=/wrkdirs/usr/ports/science/libssm/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/science/libssm/work HOME=/wrkdirs/usr/ports/science/libssm/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/science/libssm/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin NO_PIE=yes MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES PREFIX=/usr/local LOCALBASE=/usr/local CC="cc" CFLAGS="-O2 -pipe -fstack-protector -isystem /usr/local/include -fno-strict-aliasing" CPP="cpp" CPPFLAGS="-isystem /usr/local/include" LDFLAGS=" -fstack-protector -L/usr/local/lib" LIBS="" CXX="c++" CXXFLAGS="-O2 -pipe -fstack-protector -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include" MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" --End MAKE_ENV-- --PLIST_SUB-- PORTDOCS="" PORTEXAMPLES="" OSREL=12.0 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib DOCSDIR="share/doc/libssm" EXAMPLESDIR="share/examples/libssm" DATADIR="share/libssm" WWWDIR="www/libssm" ETCDIR="etc/libssm" --End PLIST_SUB-- --SUB_LIST-- PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/libssm DOCSDIR=/usr/local/share/doc/libssm EXAMPLESDIR=/usr/local/share/examples/libssm WWWDIR=/usr/local/www/libssm ETCDIR=/usr/local/etc/libssm --End SUB_LIST-- ---Begin make.conf--- USE_PACKAGE_DEPENDS=yes BATCH=yes WRKDIRPREFIX=/wrkdirs PORTSDIR=/usr/ports PACKAGES=/packages DISTDIR=/distfiles PACKAGE_BUILDING=yes PACKAGE_BUILDING_FLAVORS=yes #### /usr/local/etc/poudriere.d/make.conf #### # XXX: We really need this but cannot use it while 'make checksum' does not # try the next mirror on checksum failure. It currently retries the same # failed mirror and then fails rather then trying another. It *does* # try the next if the size is mismatched though. #MASTER_SITE_FREEBSD=yes # Build ALLOW_MAKE_JOBS_PACKAGES with 2 jobs MAKE_JOBS_NUMBER=2 # stable/10 includes src.conf too late but make.conf is in sys.mk .if ${.CURDIR:M/poudriere/jails/10*/usr/src/usr.bin/xlint*} # Disable build of llib now that head no longer has lint(1) LINT= true .endif #### /usr/ports/Mk/Scripts/ports_env.sh #### _CCVERSION_921dbbb2=FreeBSD clang version 6.0.1 (tags/RELEASE_601/final 335540) (based on LLVM 6.0.1) Target: x86_64-unknown-freebsd12.0 Thread model: posix InstalledDir: /usr/bin _ALTCCVERSION_921dbbb2=none _CXXINTERNAL_acaad9ca=FreeBSD clang version 6.0.1 (tags/RELEASE_601/final 335540) (based on LLVM 6.0.1) Target: x86_64-unknown-freebsd12.0 Thread model: posix InstalledDir: /usr/bin "/usr/bin/ld" "--eh-frame-hdr" "-dynamic-linker" "/libexec/ld-elf.so.1" "--hash-style=both" "--enable-new-dtags" "-o" "a.out" "/usr/lib/crt1.o" "/usr/lib/crti.o" "/usr/lib/crtbegin.o" "-L/usr/lib" "/dev/null" "-lc++" "-lm" "-lgcc" "--as-needed" "-lgcc_s" "--no-as-needed" "-lc" "-lgcc" "--as-needed" "-lgcc_s" "--no-as-needed" "/usr/lib/crtend.o" "/usr/lib/crtn.o" CC_OUTPUT_921dbbb2_58173849=yes CC_OUTPUT_921dbbb2_9bdba57c=yes CC_OUTPUT_921dbbb2_6a4fe7f5=yes CC_OUTPUT_921dbbb2_6bcac02b=yes CC_OUTPUT_921dbbb2_67d20829=yes CC_OUTPUT_921dbbb2_bfa62e83=yes CC_OUTPUT_921dbbb2_f0b4d593=yes CC_OUTPUT_921dbbb2_308abb44=yes CC_OUTPUT_921dbbb2_f00456e5=yes CC_OUTPUT_921dbbb2_65ad290d=yes CC_OUTPUT_921dbbb2_f2776b26=yes CC_OUTPUT_921dbbb2_b2657cc3=yes CC_OUTPUT_921dbbb2_380987f7=yes CC_OUTPUT_921dbbb2_160933ec=yes CC_OUTPUT_921dbbb2_fb62803b=yes _OBJC_CCVERSION_921dbbb2=FreeBSD clang version 6.0.1 (tags/RELEASE_601/final 335540) (based on LLVM 6.0.1) Target: x86_64-unknown-freebsd12.0 Thread model: posix InstalledDir: /usr/bin _OBJC_ALTCCVERSION_921dbbb2=none ARCH=amd64 OPSYS=FreeBSD _OSRELEASE=12.0-CURRENT OSREL=12.0 OSVERSION=1200072 PYTHONBASE=/usr/local HAVE_COMPAT_IA32_KERN=YES CONFIGURE_MAX_CMD_LEN=262144 HAVE_PORTS_ENV=1 #### Misc Poudriere #### GID=0 UID=0 DISABLE_MAKE_JOBS=poudriere ---End make.conf--- --Resource limits-- cpu time (seconds, -t) unlimited file size (512-blocks, -f) unlimited data seg size (kbytes, -d) 33554432 stack size (kbytes, -s) 524288 core file size (512-blocks, -c) unlimited max memory size (kbytes, -m) unlimited locked memory (kbytes, -l) unlimited max user processes (-u) 89999 open files (-n) 1024 virtual mem size (kbytes, -v) unlimited swap limit (kbytes, -w) unlimited socket buffer size (bytes, -b) unlimited pseudo-terminals (-p) unlimited kqueues (-k) unlimited umtx shared locks (-o) unlimited --End resource limits-- =================================================== ===> License GPLv3 accepted by the user =========================================================================== =================================================== ===> libssm-1.4.0 depends on file: /usr/local/sbin/pkg - not found ===> Installing existing package /packages/All/pkg-1.10.5_1.txz [head-amd64-default-job-19] Installing pkg-1.10.5_1... [head-amd64-default-job-19] Extracting pkg-1.10.5_1: .......... done ===> libssm-1.4.0 depends on file: /usr/local/sbin/pkg - found ===> Returning to build of libssm-1.4.0 =========================================================================== =================================================== =========================================================================== =================================================== ===> License GPLv3 accepted by the user => ssm-1.4.0.tar.gz doesn't seem to exist in /portdistfiles/. => Attempting to fetch ftp://ftp.ccp4.ac.uk/opensource/ssm-1.4.0.tar.gz fetch: ftp://ftp.ccp4.ac.uk/opensource/ssm-1.4.0.tar.gz: Operation timed out => Attempting to fetch http://distcache.FreeBSD.org/ports-distfiles/ssm-1.4.0.tar.gz ssm-1.4.0.tar.gz 0 B 0 Bps ===> Fetching all distfiles required by libssm-1.4.0 for building =========================================================================== =================================================== ===> License GPLv3 accepted by the user ===> Fetching all distfiles required by libssm-1.4.0 for building => SHA256 Checksum OK for ssm-1.4.0.tar.gz. =========================================================================== =================================================== =========================================================================== =================================================== ===> License GPLv3 accepted by the user ===> Fetching all distfiles required by libssm-1.4.0 for building ===> Extracting for libssm-1.4.0 => SHA256 Checksum OK for ssm-1.4.0.tar.gz. =========================================================================== =================================================== =========================================================================== =================================================== ===> Patching for libssm-1.4.0 =========================================================================== [head-amd64-default-job-19] | `-- Extracting binutils-2.30_3,1: .......... done [head-amd64-default-job-19] | `-- Installing gcc-ecj-4.5... [head-amd64-default-job-19] | `-- Extracting gcc-ecj-4.5: .... done [head-amd64-default-job-19] | `-- Installing gmp-6.1.2... [head-amd64-default-job-19] | `-- Extracting gmp-6.1.2: .......... done [head-amd64-default-job-19] | `-- Installing mpc-1.1.0_1... [head-amd64-default-job-19] | | `-- Installing mpfr-4.0.1... [head-amd64-default-job-19] | | `-- Extracting mpfr-4.0.1: .......... done [head-amd64-default-job-19] | `-- Extracting mpc-1.1.0_1: ......... done [head-amd64-default-job-19] `-- Extracting gcc6-6.4.0_7: .......... done [head-amd64-default-job-19] `-- Installing mmdb2-2.0.16... [head-amd64-default-job-19] `-- Extracting mmdb2-2.0.16: .......... done [head-amd64-default-job-19] Extracting libccp4-6.5.1: .......... done Message from gcc6-6.4.0_7: To ensure binaries built with this toolchain find appropriate versions of the necessary run-time libraries, you may want to link using -Wl,-rpath=/usr/local/lib/gcc6 For ports leveraging USE_GCC, USES=compiler, or USES=fortran this happens transparently. ===> libssm-1.4.0 depends on shared library: libccp4c.so - found (/usr/local/lib/libccp4c.so) ===> Returning to build of libssm-1.4.0 ===> libssm-1.4.0 depends on shared library: libmmdb2.so - found (/usr/local/lib/libmmdb2.so) =========================================================================== =================================================== ===> Configuring for libssm-1.4.0 configure: WARNING: unrecognized options: --with-mmdb configure: loading site script /usr/ports/Templates/config.site checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... (cached) /bin/mkdir -p checking for gawk... (cached) /usr/bin/awk checking whether gmake sets $(MAKE)... yes checking whether gmake supports nested variables... yes checking whether the C++ compiler works... yes checking for C++ compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C++ compiler... yes checking whether c++ accepts -g... yes checking for style of include used by gmake... GNU checking dependency style of c++... gcc3 checking for gcc... cc checking whether we are using the GNU C compiler... yes checking whether cc accepts -g... yes checking for cc option to accept ISO C89... none needed checking whether cc understands -c and -o together... yes checking dependency style of cc... gcc3 checking for ar... ar checking the archiver (ar) interface... ar checking build system type... amd64-portbld-freebsd12.0 checking host system type... amd64-portbld-freebsd12.0 checking how to print strings... printf checking for a sed that does not truncate output... (cached) /usr/bin/sed checking for grep that handles long lines and -e... (cached) /usr/bin/grep checking for egrep... (cached) /usr/bin/egrep checking for fgrep... (cached) /usr/bin/fgrep checking for ld used by cc... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/local/bin/nm -B checking the name lister (/usr/local/bin/nm -B) interface... BSD nm checking whether ln -s works... yes checking the maximum length of command line arguments... (cached) 262144 checking whether the shell understands some XSI constructs... yes checking whether the shell understands "+="... no checking how to convert amd64-portbld-freebsd12.0 file names to amd64-portbld-freebsd12.0 format... func_convert_file_noop checking how to convert amd64-portbld-freebsd12.0 file names to toolchain format... func_convert_file_noop checking for /usr/bin/ld option to reload object files... -r checking for objdump... objdump checking how to recognize dependent libraries... pass_all checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for archiver @FILE support... no checking for strip... strip checking for ranlib... ranlib checking command to parse /usr/local/bin/nm -B output from cc object... ok checking for sysroot... no checking for mt... mt checking if mt is a manifest tool... no checking how to run the C preprocessor... cpp checking for ANSI C header files... (cached) yes checking for sys/types.h... (cached) yes checking for sys/stat.h... (cached) yes checking for stdlib.h... (cached) yes checking for string.h... (cached) yes checking for memory.h... (cached) yes checking for strings.h... (cached) yes checking for inttypes.h... (cached) yes checking for stdint.h... (cached) yes checking for unistd.h... (cached) yes checking for dlfcn.h... (cached) yes checking for objdir... .libs checking if cc supports -fno-rtti -fno-exceptions... yes checking for cc option to produce PIC... -fPIC -DPIC checking if cc PIC flag -fPIC -DPIC works... yes checking if cc static flag -static works... yes checking if cc supports -c -o file.o... yes checking if cc supports -c -o file.o... (cached) yes checking whether the cc linker (/usr/bin/ld) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... freebsd12.0 ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... no checking how to run the C++ preprocessor... c++ -E checking for ld used by c++... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking whether the c++ linker (/usr/bin/ld) supports shared libraries... yes checking for c++ option to produce PIC... -fPIC -DPIC checking if c++ PIC flag -fPIC -DPIC works... yes checking if c++ static flag -static works... yes checking if c++ supports -c -o file.o... yes checking if c++ supports -c -o file.o... (cached) yes checking whether the c++ linker (/usr/bin/ld) supports shared libraries... yes checking dynamic linker characteristics... freebsd12.0 ld.so checking how to hardcode library paths into programs... immediate checking whether to enable maintainer-specific portions of Makefiles... no checking for library containing cos... -lm checking for MMDB_CCIF_Init in -lmmdb2... yes checking mmdb2/mmdb_manager.h usability... yes checking mmdb2/mmdb_manager.h presence... yes checking for mmdb2/mmdb_manager.h... yes checking for ccp4_banner in -lccp4c... yes checking ccp4/ccp4_general.h usability... yes checking ccp4/ccp4_general.h presence... yes checking for ccp4/ccp4_general.h... yes checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating ssm.pc config.status: creating config.h config.status: executing depfiles commands config.status: executing libtool commands configure: WARNING: unrecognized options: --with-mmdb =========================================================================== =================================================== ===> Building for libssm-1.4.0 gmake[1]: Entering directory '/wrkdirs/usr/ports/science/libssm/work/ssm-1.4.0' gmake all-am gmake[2]: Entering directory '/wrkdirs/usr/ports/science/libssm/work/ssm-1.4.0' depbase=`echo ssm/ssm_superpose.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/sh ./libtool --tag=CXX --mode=compile c++ -DHAVE_CONFIG_H -I. -isystem /usr/local/include -O2 -pipe -fstack-protector -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -MT ssm/ssm_superpose.lo -MD -MP -MF $depbase.Tpo -c -o ssm/ssm_superpose.lo ssm/ssm_superpose.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: c++ -DHAVE_CONFIG_H -I. -isystem /usr/local/include -O2 -pipe -fstack-protector -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -MT ssm/ssm_superpose.lo -MD -MP -MF ssm/.deps/ssm_superpose.Tpo -c ssm/ssm_superpose.cpp -fPIC -DPIC -o ssm/.libs/ssm_superpose.o depbase=`echo ssm/ssm_csia.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/sh ./libtool --tag=CXX --mode=compile c++ -DHAVE_CONFIG_H -I. -isystem /usr/local/include -O2 -pipe -fstack-protector -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -MT ssm/ssm_csia.lo -MD -MP -MF $depbase.Tpo -c -o ssm/ssm_csia.lo ssm/ssm_csia.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: c++ -DHAVE_CONFIG_H -I. -isystem /usr/local/include -O2 -pipe -fstack-protector -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -MT ssm/ssm_csia.lo -MD -MP -MF ssm/.deps/ssm_csia.Tpo -c ssm/ssm_csia.cpp -fPIC -DPIC -o ssm/.libs/ssm_csia.o depbase=`echo ssm/ssm_vxedge.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/sh ./libtool --tag=CXX --mode=compile c++ -DHAVE_CONFIG_H -I. -isystem /usr/local/include -O2 -pipe -fstack-protector -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -MT ssm/ssm_vxedge.lo -MD -MP -MF $depbase.Tpo -c -o ssm/ssm_vxedge.lo ssm/ssm_vxedge.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: c++ -DHAVE_CONFIG_H -I. -isystem /usr/local/include -O2 -pipe -fstack-protector -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -MT ssm/ssm_vxedge.lo -MD -MP -MF ssm/.deps/ssm_vxedge.Tpo -c ssm/ssm_vxedge.cpp -fPIC -DPIC -o ssm/.libs/ssm_vxedge.o depbase=`echo ssm/ssm_align.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/sh ./libtool --tag=CXX --mode=compile c++ -DHAVE_CONFIG_H -I. -isystem /usr/local/include -O2 -pipe -fstack-protector -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -MT ssm/ssm_align.lo -MD -MP -MF $depbase.Tpo -c -o ssm/ssm_align.lo ssm/ssm_align.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: c++ -DHAVE_CONFIG_H -I. -isystem /usr/local/include -O2 -pipe -fstack-protector -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -MT ssm/ssm_align.lo -MD -MP -MF ssm/.deps/ssm_align.Tpo -c ssm/ssm_align.cpp -fPIC -DPIC -o ssm/.libs/ssm_align.o depbase=`echo ssm/ssm_malign.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/sh ./libtool --tag=CXX --mode=compile c++ -DHAVE_CONFIG_H -I. -isystem /usr/local/include -O2 -pipe -fstack-protector -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -MT ssm/ssm_malign.lo -MD -MP -MF $depbase.Tpo -c -o ssm/ssm_malign.lo ssm/ssm_malign.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: c++ -DHAVE_CONFIG_H -I. -isystem /usr/local/include -O2 -pipe -fstack-protector -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -MT ssm/ssm_malign.lo -MD -MP -MF ssm/.deps/ssm_malign.Tpo -c ssm/ssm_malign.cpp -fPIC -DPIC -o ssm/.libs/ssm_malign.o depbase=`echo ssm/ssm_graph.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/sh ./libtool --tag=CXX --mode=compile c++ -DHAVE_CONFIG_H -I. -isystem /usr/local/include -O2 -pipe -fstack-protector -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -MT ssm/ssm_graph.lo -MD -MP -MF $depbase.Tpo -c -o ssm/ssm_graph.lo ssm/ssm_graph.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: c++ -DHAVE_CONFIG_H -I. -isystem /usr/local/include -O2 -pipe -fstack-protector -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -MT ssm/ssm_graph.lo -MD -MP -MF ssm/.deps/ssm_graph.Tpo -c ssm/ssm_graph.cpp -fPIC -DPIC -o ssm/.libs/ssm_graph.o /bin/sh ./libtool --tag=CXX --mode=link c++ -O2 -pipe -fstack-protector -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -no-undefined -version-info 2:0:0 -fstack-protector -L/usr/local/lib -o libssm.la -rpath /usr/local/lib ssm/ssm_superpose.lo ssm/ssm_csia.lo ssm/ssm_vxedge.lo ssm/ssm_align.lo ssm/ssm_malign.lo ssm/ssm_graph.lo -lmmdb2 -lm libtool: link: c++ -fPIC -DPIC -shared -nostdlib /usr/lib/crti.o /usr/lib/crtbeginS.o ssm/.libs/ssm_superpose.o ssm/.libs/ssm_csia.o ssm/.libs/ssm_vxedge.o ssm/.libs/ssm_align.o ssm/.libs/ssm_malign.o ssm/.libs/ssm_graph.o -L/usr/local/lib -lmmdb2 -L/usr/lib -lc++ -lm -lc -lgcc -lgcc_s /usr/lib/crtendS.o /usr/lib/crtn.o -O2 -fstack-protector -fstack-protector -Wl,-soname -Wl,libssm.so.2 -o .libs/libssm.so.2.0.0 libtool: link: (cd ".libs" && rm -f "libssm.so.2" && ln -s "libssm.so.2.0.0" "libssm.so.2") libtool: link: (cd ".libs" && rm -f "libssm.so" && ln -s "libssm.so.2.0.0" "libssm.so") libtool: link: ( cd ".libs" && rm -f "libssm.la" && ln -s "../libssm.la" "libssm.la" ) c++ -DHAVE_CONFIG_H -I. -D_ccp4_ -isystem /usr/local/include -O2 -pipe -fstack-protector -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -MT superpose-superpose.o -MD -MP -MF .deps/superpose-superpose.Tpo -c -o superpose-superpose.o `test -f 'superpose.cpp' || echo './'`superpose.cpp superpose.cpp:117:10: error: invalid suffix on literal; C++11 requires a space between literal and identifier [-Wreserved-user-defined-literal] " v."superpose_version" from "superpose_date" built with SSM v.%i.%i.%i, " ^ superpose.cpp:117:35: error: invalid suffix on literal; C++11 requires a space between literal and identifier [-Wreserved-user-defined-literal] " v."superpose_version" from "superpose_date" built with SSM v.%i.%i.%i, " ^ superpose.cpp:298:20: error: invalid suffix on literal; C++11 requires a space between literal and identifier [-Wreserved-user-defined-literal] " Superpose v."superpose_version" from "superpose_date" " ^ superpose.cpp:298:45: error: invalid suffix on literal; C++11 requires a space between literal and identifier [-Wreserved-user-defined-literal] " Superpose v."superpose_version" from "superpose_date" " ^ 4 errors generated. gmake[2]: *** [Makefile:621: superpose-superpose.o] Error 1 gmake[2]: Leaving directory '/wrkdirs/usr/ports/science/libssm/work/ssm-1.4.0' gmake[1]: *** [Makefile:419: all] Error 2 gmake[1]: Leaving directory '/wrkdirs/usr/ports/science/libssm/work/ssm-1.4.0' *** Error code 1 Stop. make: stopped in /usr/ports/science/libssm