Date: Sun, 18 Feb 2018 02:02:48 GMT From: pkg-fallout@FreeBSD.org To: pkg-fallout@FreeBSD.org Subject: [package - head-arm64-default][science/mpb] Failed for mpb-1.5_7 in build Message-ID: <201802180202.w1I22mgp039803@thunderx1.nyi.freebsd.org>
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You are receiving this mail as a port that you maintain is failing to build on the FreeBSD package build server. Please investigate the failure and submit a PR to fix build. Maintainer: rhurlin@gwdg.de Last committer: jbeich@FreeBSD.org Ident: $FreeBSD: head/science/mpb/Makefile 459910 2018-01-25 07:52:54Z jbeich $ Log URL: http://thunderx1.nyi.freebsd.org/data/head-arm64-default/p461032_s328914/logs/mpb-1.5_7.log Build URL: http://thunderx1.nyi.freebsd.org/build.html?mastername=head-arm64-default&build=p461032_s328914 Log: =>> Building science/mpb build started at Sun Feb 18 02:00:52 UTC 2018 port directory: /usr/ports/science/mpb package name: mpb-1.5_7 building for: FreeBSD head-arm64-default-job-20 12.0-CURRENT FreeBSD 12.0-CURRENT 1200056 arm64 maintained by: rhurlin@gwdg.de Makefile ident: $FreeBSD: head/science/mpb/Makefile 459910 2018-01-25 07:52:54Z jbeich $ Poudriere version: 3.2.4-42-g98f2e28b Host OSVERSION: 1200052 Jail OSVERSION: 1200056 Job Id: 20 !!! Jail is newer than host. (Jail: 1200056, Host: 1200052) !!! !!! This is not supported. !!! !!! Host kernel must be same or newer than jail. !!! !!! Expect build failures. !!! ---Begin Environment--- SHELL=/bin/csh OSVERSION=1200056 UNAME_v=FreeBSD 12.0-CURRENT 1200056 UNAME_r=12.0-CURRENT BLOCKSIZE=K MAIL=/var/mail/root STATUS=1 SAVED_TERM= MASTERMNT=/usr/local/poudriere/data/.m/head-arm64-default/ref PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin POUDRIERE_BUILD_TYPE=bulk OLDPWD=/usr/local/poudriere/data/.m/head-arm64-default/ref/.p P_PORTS_FEATURES=FLAVORS SELECTED_OPTIONS PWD=/usr/local/poudriere/data/.m/head-arm64-default/ref/.p/pool MASTERNAME=head-arm64-default SCRIPTPREFIX=/usr/local/share/poudriere USER=root HOME=/root POUDRIERE_VERSION=3.2.4-42-g98f2e28b SCRIPTPATH=/usr/local/share/poudriere/bulk.sh LIBEXECPREFIX=/usr/local/libexec/poudriere LOCALBASE=/usr/local PACKAGE_BUILDING=yes POUDRIEREPATH=/usr/local/bin/poudriere ---End Environment--- ---Begin Poudriere Port Flags/Env--- PORT_FLAGS= PKGENV= FLAVOR= DEPENDS_ARGS= MAKE_ARGS= ---End Poudriere Port Flags/Env--- ---Begin OPTIONS List--- ===> The following configuration options are available for mpb-1.5_7: ATLAS=off: Use math/atlas instead of math/lapack NLOPT=off: Use math/nlopt (check also in science/libctl) ===> Use 'make config' to modify these settings ---End OPTIONS List--- --MAINTAINER-- rhurlin@gwdg.de --End MAINTAINER-- --CONFIGURE_ARGS-- --with-lapack=-llapack --prefix=/usr/local ${_LATE_CONFIGURE_ARGS} --End CONFIGURE_ARGS-- --CONFIGURE_ENV-- F77="gfortran6" FC="gfortran6" FFLAGS="-O -Wl,-rpath=/usr/local/lib/gcc6" FCFLAGS="-Wl,-rpath=/usr/local/lib/gcc6" PKG_CONFIG=pkgconf XDG_DATA_HOME=/wrkdirs/usr/ports/science/mpb/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/science/mpb/work HOME=/wrkdirs/usr/ports/science/mpb/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/science/mpb/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin SHELL=/bin/sh CONFIG_SHELL=/bin/sh ADDR2LINE="/usr/local/bin/addr2line" AR="/usr/local/bin/ar" AS="/usr/local/bin/as" CPPFILT="/usr/local/bin/c++filt" GPROF="/usr/local/bin/gprof" LD="/usr/local/bin/ld" NM="/usr/local/bin/nm" OBJCOPY="/usr/local/bin/objcopy" OBJDUMP="/usr/local/bin/objdump" RANLIB="/usr/local/bin/ranlib" READELF="/usr/local/bin/readelf" SIZE="/usr/local/bin/size" STRINGS="/usr/local/bin/strings" CONFIG_SITE=/usr/ports/Templates/config.site lt_cv_sys_max_cmd_len=262144 --End CONFIGURE_ENV-- --MAKE_ENV-- F77="gfortran6" FC="gfortran6" FFLAGS="-O -Wl,-rpath=/usr/local/lib/gcc6" FCFLAGS="-Wl,-rpath=/usr/local/lib/gcc6" XDG_DATA_HOME=/wrkdirs/usr/ports/science/mpb/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/science/mpb/work HOME=/wrkdirs/usr/ports/science/mpb/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/science/mpb/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin NO_PIE=yes MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES ADDR2LINE="/usr/local/bin/addr2line" AR="/usr/local/bin/ar" AS="/usr/local/bin/as" CPPFILT="/usr/local/bin/c++filt" GPROF="/usr/local/bin/gprof" LD="/usr/local/bin/ld" NM="/usr/local/bin/nm" OBJCOPY="/usr/local/bin/objcopy" OBJDUMP="/usr/local/bin/objdump" RANLIB="/usr/local/bin/ranlib" READELF="/usr/local/bin/readelf" SIZE="/usr/local/bin/size" STRINGS="/usr/local/bin/strings" PREFIX=/usr/local LOCALBASE=/usr/local LIBDIR="/usr/lib" CC="cc" CFLAGS="-O2 -pipe -fno-strict-aliasing" CPP="cpp" CPPFLAGS="-I/usr/local/include " LDFLAGS=" -L/usr/local/lib -Wl,-rpath=/usr/local/lib/gcc6 -L/usr/local/lib/gcc6 -B/usr/local/bin" LIBS="" CXX="c++" CXXFLAGS="-O2 -pipe -fno-strict-aliasing " MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" --End MAKE_ENV-- --PLIST_SUB-- PORTDOCS="" PORTEXAMPLES="" OSREL=12.0 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib DOCSDIR="share/doc/mpb" EXAMPLESDIR="share/examples/mpb" DATADIR="share/mpb" WWWDIR="www/mpb" ETCDIR="etc/mpb" --End PLIST_SUB-- --SUB_LIST-- PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/mpb DOCSDIR=/usr/local/share/doc/mpb EXAMPLESDIR=/usr/local/share/examples/mpb WWWDIR=/usr/local/www/mpb ETCDIR=/usr/local/etc/mpb --End SUB_LIST-- ---Begin make.conf--- USE_PACKAGE_DEPENDS=yes BATCH=yes WRKDIRPREFIX=/wrkdirs PORTSDIR=/usr/ports PACKAGES=/packages DISTDIR=/distfiles PACKAGE_BUILDING=yes PACKAGE_BUILDING_FLAVORS=yes #### /usr/local/etc/poudriere.d/make.conf #### # XXX: We really need this but cannot use it while 'make checksum' does not # try the next mirror on checksum failure. It currently retries the same # failed mirror and then fails rather then trying another. It *does* # try the next if the size is mismatched though. #MASTER_SITE_FREEBSD=yes # Build ALLOW_MAKE_JOBS_PACKAGES with 2 jobs MAKE_JOBS_NUMBER=2 #### /usr/ports/Mk/Scripts/ports_env.sh #### ARCH=aarch64 CONFIGURE_MAX_CMD_LEN=262144 OPSYS=FreeBSD OSREL=12.0 OSVERSION=1200056 PYTHONBASE=/usr/local UID=0 _OSRELEASE=12.0-CURRENT #### Misc Poudriere #### GID=0 DISABLE_MAKE_JOBS=poudriere ---End make.conf--- --Resource limits-- cpu time (seconds, -t) unlimited file size (512-blocks, -f) unlimited data seg size (kbytes, -d) 1048576 stack size (kbytes, -s) 1048576 core file size (512-blocks, -c) unlimited max memory size (kbytes, -m) unlimited locked memory (kbytes, -l) unlimited max user processes (-u) 89999 open files (-n) 1024 virtual mem size (kbytes, -v) unlimited swap limit (kbytes, -w) unlimited socket buffer size (bytes, -b) unlimited pseudo-terminals (-p) unlimited kqueues (-k) unlimited umtx shared locks (-o) unlimited --End resource limits-- =======================<phase: check-sanity >============================ ===> License GPLv2 accepted by the user =========================================================================== =======================<phase: pkg-depends >============================ ===> mpb-1.5_7 depends on file: /usr/local/sbin/pkg - not found ===> Installing existing package /packages/All/pkg-1.10.4.txz [head-arm64-default-job-20] Installing pkg-1.10.4... [head-arm64-default-job-20] Extracting pkg-1.10.4: .......... done ===> mpb-1.5_7 depends on file: /usr/local/sbin/pkg - found ===> Returning to build of mpb-1.5_7 =========================================================================== =======================<phase: fetch-depends >============================ =========================================================================== =======================<phase: fetch >============================ ===> License GPLv2 accepted by the user ===> Fetching all distfiles required by mpb-1.5_7 for building =========================================================================== =======================<phase: checksum >============================ ===> License GPLv2 accepted by the user ===> Fetching all distfiles required by mpb-1.5_7 for building => SHA256 Checksum OK for mpb-1.5.tar.gz. =========================================================================== =======================<phase: extract-depends>============================ =========================================================================== =======================<phase: extract >============================ ===> License GPLv2 accepted by the user ===> Fetching all distfiles required by mpb-1.5_7 for building ===> Extracting for mpb-1.5_7 => SHA256 Checksum OK for mpb-1.5.tar.gz. =========================================================================== =======================<phase: patch-depends >============================ =========================================================================== =======================<phase: patch >============================ ===> Patching for mpb-1.5_7 =========================================================================== =======================<phase: build-depends >============================ ===> mpb-1.5_7 depends on executable: bash - not found ===> Installing existing package /packages/All/bash-4.4.12_3.txz [head-arm64-default-job-20] Installing bash-4.4.12_3... [head-arm64-default-job-20] `-- Installing gettext-runtime-0.19.8.1_1... [head-arm64-default-job-20] | `-- Installing indexinfo-0.3.1... [head-arm64-default-job-20] | `-- Extracting indexinfo-0.3.1: .... done [head-arm64-default-job-20] `-- Extracting gettext-runtime-0.19.8.1_1: .......... done [head-arm64-default-job-20] Extracting bash-4.4.12_3: .......... done ===> mpb-1.5_7 depends on executable: bash - found ===> Returning to build of mpb-1.5_7 ===> mpb-1.5_7 depends on executable: gfortran6 - not found ===> Installing existing package /packages/All/gcc6-6.4.0_3.txz [head-arm64-default-job-20] Installing gcc6-6.4.0_3... [head-arm64-default-job-20] `-- Installing binutils-2.30,1... [head-arm64-default-job-20] `-- Extracting binutils-2.30,1: .......... done [head-arm64-default-job-20] `-- Installing gmp-6.1.2... [head-arm64-default-job-20] `-- Extracting gmp-6.1.2: .......... done [head-arm64-default-job-20] `-- Installing mpc-1.0.3... [head-arm64-default-job-20] | `-- Installing mpfr-3.1.6... [head-arm64-default-job-20] | `-- Extracting mpfr-3.1.6: .......... done [head-arm64-default-job-20] `-- Extracting mpc-1.0.3: ...... done [head-arm64-default-job-20] Extracting gcc6-6.4.0_3: .......... done Message from gcc6-6.4.0_3: To ensure binaries built with this toolchain find appropriate versions of the necessary run-time libraries, you may want to link using -Wl,-rpath=/usr/local/lib/gcc6 <snip> checking for cc option to accept ISO C89... none needed checking whether cc understands -c and -o together... yes checking dependency style of cc... gcc3 checking for a sed that does not truncate output... (cached) /usr/bin/sed checking for grep that handles long lines and -e... (cached) /usr/bin/grep checking for egrep... (cached) /usr/bin/egrep checking for fgrep... (cached) /usr/bin/fgrep checking for ld used by cc... /usr/local/bin/ld checking if the linker (/usr/local/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/local/bin/nm checking the name lister (/usr/local/bin/nm) interface... BSD nm checking whether ln -s works... yes checking the maximum length of command line arguments... (cached) 262144 checking whether the shell understands some XSI constructs... yes checking whether the shell understands "+="... no checking how to convert aarch64-portbld-freebsd12.0 file names to aarch64-portbld-freebsd12.0 format... func_convert_file_noop checking how to convert aarch64-portbld-freebsd12.0 file names to toolchain format... func_convert_file_noop checking for /usr/local/bin/ld option to reload object files... -r checking for objdump... /usr/local/bin/objdump checking how to recognize dependent libraries... pass_all checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for archiver @FILE support... @ checking for strip... strip checking for ranlib... /usr/local/bin/ranlib checking command to parse /usr/local/bin/nm output from cc object... ok checking for sysroot... no checking for mt... mt checking if mt is a manifest tool... no checking how to run the C preprocessor... cpp checking for ANSI C header files... (cached) yes checking for sys/types.h... (cached) yes checking for sys/stat.h... (cached) yes checking for stdlib.h... (cached) yes checking for string.h... (cached) yes checking for memory.h... (cached) yes checking for strings.h... (cached) yes checking for inttypes.h... (cached) yes checking for stdint.h... (cached) yes checking for unistd.h... (cached) yes checking for dlfcn.h... (cached) yes checking for objdir... .libs checking if cc supports -fno-rtti -fno-exceptions... yes checking for cc option to produce PIC... -fPIC -DPIC checking if cc PIC flag -fPIC -DPIC works... yes checking if cc static flag -static works... no checking if cc supports -c -o file.o... yes checking if cc supports -c -o file.o... (cached) yes checking whether the cc linker (/usr/local/bin/ld) supports shared libraries... yes checking dynamic linker characteristics... freebsd12.0 ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... no checking whether to build static libraries... yes checking whether we are using the GNU Fortran 77 compiler... yes checking whether gfortran6 accepts -g... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... no checking whether to build static libraries... yes checking for gfortran6 option to produce PIC... -fPIC checking if gfortran6 PIC flag -fPIC works... yes checking if gfortran6 static flag -static works... no checking if gfortran6 supports -c -o file.o... yes checking if gfortran6 supports -c -o file.o... (cached) yes checking whether the gfortran6 linker (/usr/local/bin/ld) supports shared libraries... yes checking dynamic linker characteristics... freebsd12.0 ld.so checking how to hardcode library paths into programs... immediate checking for vendor cc to be used instead of gcc... checking for cc... cc checking whether we are using the GNU C compiler... (cached) yes checking whether cc accepts -g... (cached) yes checking for cc option to accept ISO C89... (cached) none needed checking whether cc understands -c and -o together... (cached) yes checking dependency style of cc... (cached) gcc3 checking for sqrt in -lm... yes checking how to get verbose linking output from gfortran6... -v checking for Fortran 77 libraries of gfortran6... -L/usr/local/lib -L/usr/local/lib/gcc6 -L/usr/local/bin -L/usr/local/lib/gcc6/gcc/aarch64-portbld-freebsd12.0/6.4.0 -L/usr/local/lib/gcc6/gcc/aarch64-portbld-freebsd12.0/6.4.0/../../../../../aarch64-portbld-freebsd12.0/lib -L/usr/local/lib/gcc6/gcc/aarch64-portbld-freebsd12.0/6.4.0/../../.. -lgfortran -lm checking for dummy main to link with Fortran 77 libraries... none checking for Fortran 77 name-mangling scheme... lower case, underscore, no extra underscore checking for fftw_execute in -lfftw3... no checking for fftw in -ldfftw... no checking for fftw in -lfftw... yes checking if sgemm_ is being linked in already... no checking for sgemm_ in -lopenblas... no checking for ATL_xerbla in -latlas... no checking for sgemm_ in -lblas... yes checking for dgemm_ in -ldgemm... no checking for sgemm_ in -lmkl... no checking for sgemm_ in -framework vecLib... no checking for sgemm_ in -lcxml... no checking for sgemm_ in -ldxml... no checking for sgemm_ in -lscs... no checking for sgemm_ in -lcomplib.sgimath... no checking for sgemm_ in -lblas... (cached) yes checking for sgemm_ in -lessl... no checking for sgemm_ in -lblas... (cached) yes checking for cheev_ in -llapack... yes checking for deflate in -lz... (cached) yes checking for H5Pcreate in -lhdf5... yes checking hdf5.h usability... yes checking hdf5.h presence... yes checking for hdf5.h... yes checking for guile... yes checking for guile-config... guile-config checking if linking to guile works... yes checking libguile.h usability... yes checking libguile.h presence... yes checking for libguile.h... yes checking guile/gh.h usability... no checking guile/gh.h presence... no checking for guile/gh.h... no checking for scm_make_smob_type... yes checking for scm_array_get_handle... yes checking for scm_is_array... yes checking for SCM_SMOB_PREDICATE... yes checking for SCM_SMOB_DATA... yes checking for SCM_NEWSMOB... yes checking how to activate readline in Guile... ice-9 readline checking for libctl dir... /usr/local/share/libctl checking for gen-ctl-io... gen-ctl-io checking for ctl_get_vector3 in -lctl... yes checking ctl.h usability... yes checking ctl.h presence... yes checking for ctl.h... yes checking whether libctl version is at least 3.2.1... ok checking for libctl_quiet feature... yes checking for basename in -lgen... no checking nlopt.h usability... no checking nlopt.h presence... no checking for nlopt.h... no checking for nlopt_minimize in -lnlopt... no checking for ANSI C header files... (cached) yes checking for unistd.h... (cached) yes checking for getopt.h... (cached) yes checking for nlopt.h... (cached) no checking for an ANSI C-conforming const... yes checking for inline... inline checking for getopt... (cached) yes checking for strncmp... yes checking whether calling BLAS zdotc works... no checking for bash... /usr/local/bin/bash checking for feenableexcept... no checking whether feenableexcept declaration is usable... yes checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating examples/Makefile config.status: creating tests/Makefile config.status: creating src/Makefile config.status: creating src/util/Makefile config.status: creating src/matrices/Makefile config.status: creating src/matrixio/Makefile config.status: creating src/maxwell/Makefile config.status: creating mpb/Makefile config.status: creating mpb/mpb.scm config.status: creating mpb/mpb-split-preinstall config.status: creating utils/Makefile config.status: creating config.h config.status: creating src/mpbconf.h config.status: executing depfiles commands config.status: executing libtool commands =========================================================================== =======================<phase: build >============================ ===> Building for mpb-1.5_7 /usr/bin/make all-recursive Making all in src cp -f mpbconf.h mpb.h /usr/bin/make all-recursive Making all in util cc -DHAVE_CONFIG_H -I. -I../.. -I../../src -I/usr/local/include -I/usr/local/include/guile/2.0 -I/usr/local/include -D_THREAD_SAFE -pthread -O2 -pipe -fno-strict-aliasing -Wall -W -Wbad-function-cast -Wcast-qual -Wpointer-arith -Wcast-align -pedantic -MT sphere-quad.o -MD -MP -MF .deps/sphere-quad.Tpo -c -o sphere-quad.o sphere-quad.c mv -f .deps/sphere-quad.Tpo .deps/sphere-quad.Po /bin/sh ../../libtool --tag=CC --mode=link cc -O2 -pipe -fno-strict-aliasing -Wall -W -Wbad-function-cast -Wcast-qual -Wpointer-arith -Wcast-align -pedantic -L/usr/local/lib -Wl,-rpath=/usr/local/lib/gcc6 -L/usr/local/lib/gcc6 -B/usr/local/bin -o sphere_quad sphere-quad.o -lctl -L/usr/local/lib -lguile-2.0 -lgc-threaded -lhdf5 -lpthread -lz -llapack -lblas -lfftw -lm -L/usr/local/lib -L/usr/local/lib/gcc6 -L/usr/local/bin -L/usr/local/lib/gcc6/gcc/aarch64-portbld-freebsd12.0/6.4.0 -L/usr/local/lib/gcc6/gcc/aarch64-portbld-freebsd12.0/6.4.0/../../../../../aarch64-portbld-freebsd12.0/lib -L/usr/local/lib/gcc6/gcc/aarch64-portbld-freebsd12.0/6.4.0/../../.. -lgfortran -lm libtool: link: cc -O2 -pipe -fno-strict-aliasing -Wall -W -Wbad-function-cast -Wcast-qual -Wpointer-arith -Wcast-align -pedantic -Wl,-rpath=/usr/local/lib/gcc6 -B/usr/local/bin -o sphere_quad sphere-quad.o -L/usr/local/lib -L/usr/local/lib/gcc6 -lctl -lguile-2.0 -lgc-threaded -lhdf5 -lpthread -lz -llapack -lblas /usr/local/lib/libfftw.so -L/usr/local/bin -L/usr/local/lib/gcc6/gcc/aarch64-portbld-freebsd12.0/6.4.0 -L/usr/local/lib/gcc6/gcc/aarch64-portbld-freebsd12.0/6.4.0/../../../../../aarch64-portbld-freebsd12.0/lib -L/usr/local/lib/gcc6/gcc/aarch64-portbld-freebsd12.0/6.4.0/../../.. -lgfortran -lm -Wl,-rpath -Wl,/usr/local/lib -Wl,-rpath -Wl,/usr/local/lib (echo "/* This file was automatically generated --- DO NOT EDIT */"; echo; ../../src/util/sphere_quad) > sphere-quad.h /lib/libgcc_s.so.1: version GCC_4.5.0 required by /usr/local/lib/gcc6/libgfortran.so.3 not found *** Error code 1 Stop. make[5]: stopped in /wrkdirs/usr/ports/science/mpb/work/mpb-1.5/src/util *** Error code 1 Stop. make[4]: stopped in /wrkdirs/usr/ports/science/mpb/work/mpb-1.5/src *** Error code 1 Stop. make[3]: stopped in /wrkdirs/usr/ports/science/mpb/work/mpb-1.5/src *** Error code 1 Stop. make[2]: stopped in /wrkdirs/usr/ports/science/mpb/work/mpb-1.5 *** Error code 1 Stop. make[1]: stopped in /wrkdirs/usr/ports/science/mpb/work/mpb-1.5 *** Error code 1 Stop. make: stopped in /usr/ports/science/mpb
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