Skip site navigation (1)Skip section navigation (2)
Date:      Mon, 4 Mar 2019 06:55:09 +0000 (UTC)
From:      Jan Beich <jbeich@FreeBSD.org>
To:        ports-committers@freebsd.org, svn-ports-all@freebsd.org, svn-ports-head@freebsd.org
Subject:   svn commit: r494554 - head/biology/bedtools
Message-ID:  <201903040655.x246t9Ht086024@repo.freebsd.org>

next in thread | raw e-mail | index | archive | help
Author: jbeich
Date: Mon Mar  4 06:55:08 2019
New Revision: 494554
URL: https://svnweb.freebsd.org/changeset/ports/494554

Log:
  biology/bedtools: unbreak with libc++ 8
  
  In file included from FileReader.cpp:1:
  In file included from /usr/include/c++/v1/iostream:38:
  In file included from /usr/include/c++/v1/ios:216:
  In file included from /usr/include/c++/v1/__locale:15:
  In file included from /usr/include/c++/v1/string:505:
  In file included from /usr/include/c++/v1/string_view:176:
  In file included from /usr/include/c++/v1/__string:57:
  In file included from /usr/include/c++/v1/algorithm:640:
  In file included from /usr/include/c++/v1/initializer_list:47:
  In file included from /usr/include/c++/v1/cstddef:38:
  ../../../utils//gzstream/version:1:1: error: expected unqualified-id
  1.5 (08 Jan 2003)
  ^
  
  PR:		236192
  Approved by:	portmgr blanket

Modified:
  head/biology/bedtools/Makefile   (contents, props changed)

Modified: head/biology/bedtools/Makefile
==============================================================================
--- head/biology/bedtools/Makefile	Mon Mar  4 06:43:06 2019	(r494553)
+++ head/biology/bedtools/Makefile	Mon Mar  4 06:55:08 2019	(r494554)
@@ -17,6 +17,11 @@ USE_GITHUB=	yes
 GH_ACCOUNT=	arq5x
 GH_PROJECT=	bedtools2
 
+post-extract:
+# Avoid conflict with C++20 <version> by adding .txt suffix
+	@${MV} ${WRKSRC}/src/utils/gzstream/version \
+		${WRKSRC}/src/utils/gzstream/version.txt
+
 pre-build:
 	@${REINPLACE_CMD} -e 's|python|${PYTHON_CMD}|g' ${WRKSRC}/Makefile
 	@${REINPLACE_CMD} -e 's|@\$$(CXX)|$$(CXX)|g' \



Want to link to this message? Use this URL: <https://mail-archive.FreeBSD.org/cgi/mid.cgi?201903040655.x246t9Ht086024>