From owner-freebsd-pkg-fallout@freebsd.org Sun Jul 16 01:29:58 2017 Return-Path: Delivered-To: freebsd-pkg-fallout@mailman.ysv.freebsd.org Received: from mx1.freebsd.org (mx1.freebsd.org [IPv6:2001:1900:2254:206a::19:1]) by mailman.ysv.freebsd.org (Postfix) with ESMTP id E5E3DB94E5A for ; Sun, 16 Jul 2017 01:29:58 +0000 (UTC) (envelope-from pkg-fallout@FreeBSD.org) Received: from mailman.ysv.freebsd.org (mailman.ysv.freebsd.org [IPv6:2001:1900:2254:206a::50:5]) by mx1.freebsd.org (Postfix) with ESMTP id D2C0A66570 for ; Sun, 16 Jul 2017 01:29:58 +0000 (UTC) (envelope-from pkg-fallout@FreeBSD.org) Received: by mailman.ysv.freebsd.org (Postfix) id D22E9B94E59; Sun, 16 Jul 2017 01:29:58 +0000 (UTC) Delivered-To: pkg-fallout@mailman.ysv.freebsd.org Received: from mx1.freebsd.org (mx1.freebsd.org [IPv6:2001:1900:2254:206a::19:1]) by mailman.ysv.freebsd.org (Postfix) with ESMTP id D1D96B94E58 for ; Sun, 16 Jul 2017 01:29:58 +0000 (UTC) (envelope-from pkg-fallout@FreeBSD.org) Received: from beefy8.nyi.freebsd.org (beefy8.nyi.freebsd.org [IPv6:2610:1c1:1:6080::16:eb]) (using TLSv1.2 with cipher ECDHE-RSA-AES256-GCM-SHA384 (256/256 bits)) (Client did not present a certificate) by mx1.freebsd.org (Postfix) with ESMTPS id 9E5746656F for ; Sun, 16 Jul 2017 01:29:58 +0000 (UTC) (envelope-from pkg-fallout@FreeBSD.org) Received: from beefy8.nyi.freebsd.org (localhost [127.0.0.1]) by beefy8.nyi.freebsd.org (8.15.2/8.15.2) with ESMTP id v6G1TvWd072878 for ; Sun, 16 Jul 2017 01:29:57 GMT (envelope-from pkg-fallout@FreeBSD.org) Received: (from root@localhost) by beefy8.nyi.freebsd.org (8.15.2/8.15.2/Submit) id v6G1TvcX072848; Sun, 16 Jul 2017 01:29:57 GMT (envelope-from pkg-fallout@FreeBSD.org) Date: Sun, 16 Jul 2017 01:29:57 GMT From: pkg-fallout@FreeBSD.org Message-Id: <201707160129.v6G1TvcX072848@beefy8.nyi.freebsd.org> To: pkg-fallout@FreeBSD.org Subject: [package - head-armv6-default][biology/migrate] Failed for migrate-3.6.11 in build X-BeenThere: freebsd-pkg-fallout@freebsd.org X-Mailman-Version: 2.1.23 Precedence: list List-Id: Fallout logs from package building List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , X-List-Received-Date: Sun, 16 Jul 2017 01:29:59 -0000 You are receiving this mail as a port that you maintain is failing to build on the FreeBSD package build server. Please investigate the failure and submit a PR to fix build. Maintainer: ports@FreeBSD.org Last committer: amdmi3@FreeBSD.org Ident: $FreeBSD: head/biology/migrate/Makefile 413499 2016-04-17 10:15:59Z amdmi3 $ Log URL: http://beefy8.nyi.freebsd.org/data/head-armv6-default/p445979_s321036/logs/migrate-3.6.11.log Build URL: http://beefy8.nyi.freebsd.org/build.html?mastername=head-armv6-default&build=p445979_s321036 Log: ====>> Building biology/migrate build started at Sun Jul 16 01:29:47 UTC 2017 port directory: /usr/ports/biology/migrate qemu: unsupported syscall: 552 (calling anyway) qemu: unsupported syscall: 552 (calling anyway) qemu: unsupported syscall: 551 (calling anyway) qemu: unsupported syscall: 552 (calling anyway) qemu: unsupported syscall: 552 (calling anyway) qemu: unsupported syscall: 552 (calling anyway) qemu: unsupported syscall: 551 (calling anyway) qemu: unsupported syscall: 551 (calling anyway) qemu: unsupported syscall: 551 (calling anyway) building for: FreeBSD head-armv6-default-job-19 12.0-CURRENT FreeBSD 12.0-CURRENT 1200038 arm maintained by: ports@FreeBSD.org Makefile ident: $FreeBSD: head/biology/migrate/Makefile 413499 2016-04-17 10:15:59Z amdmi3 $ Poudriere version: 3.1.19-48-g1bf78d5a Host OSVERSION: 1200033 Jail OSVERSION: 1200038 Job Id: 19 !!! Jail is newer than host. (Jail: 1200038, Host: 1200033) !!! !!! This is not supported. !!! !!! Host kernel must be same or newer than jail. !!! !!! Expect build failures. !!! ---Begin Environment--- SHELL=/bin/csh UNAME_p=armv6 UNAME_m=arm ABI_FILE=/usr/lib/crt1.o OSVERSION=1200038 UNAME_v=FreeBSD 12.0-CURRENT 1200038 UNAME_r=12.0-CURRENT BLOCKSIZE=K MAIL=/var/mail/root STATUS=1 SAVED_TERM= MASTERMNT=/usr/local/poudriere/data/.m/head-armv6-default/ref QEMU_EMULATING=1 PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin POUDRIERE_BUILD_TYPE=bulk PKGNAME=migrate-3.6.11 OLDPWD=/ PWD=/usr/local/poudriere/data/.m/head-armv6-default/ref/.p/pool MASTERNAME=head-armv6-default SCRIPTPREFIX=/usr/local/share/poudriere USER=root HOME=/root POUDRIERE_VERSION=3.1.19-48-g1bf78d5a SCRIPTPATH=/usr/local/share/poudriere/bulk.sh LIBEXECPREFIX=/usr/local/libexec/poudriere LOCALBASE=/usr/local POUDRIEREPATH=/usr/local/bin/poudriere ---End Environment--- ---Begin Poudriere Port Flags/Env--- PORT_FLAGS= PKGENV= ---End Poudriere Port Flags/Env--- ---Begin OPTIONS List--- ===> The following configuration options are available for migrate-3.6.11: DOCS=on: Build and/or install documentation EXAMPLES=on: Build and/or install examples THREAD=off: Build with THREAD support ===> Use 'make config' to modify these settings ---End OPTIONS List--- --CONFIGURE_ARGS-- --prefix=/usr/local ${_LATE_CONFIGURE_ARGS} --End CONFIGURE_ARGS-- --CONFIGURE_ENV-- ac_cv_prog_GMAKE="/nxb-bin/usr/bin/make" XDG_DATA_HOME=/wrkdirs/usr/ports/biology/migrate/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/migrate/work HOME=/wrkdirs/usr/ports/biology/migrate/work TMPDIR="/tmp" SHELL=/bin/sh CONFIG_SHELL=/bin/sh CONFIG_SITE=/usr/ports/Templates/config.site lt_cv_sys_max_cmd_len=262144 --End CONFIGURE_ENV-- --MAKE_ENV-- XDG_DATA_HOME=/wrkdirs/usr/ports/biology/migrate/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/migrate/work HOME=/wrkdirs/usr/ports/biology/migrate/work TMPDIR="/tmp" NO_PIE=yes MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES PREFIX=/usr/local LOCALBASE=/usr/local LIBDIR="/usr/lib" CC="/nxb-bin/usr/bin/cc" CFLAGS="-O2 -pipe -fno-strict-aliasing" CPP="/nxb-bin/usr/bin/cpp" CPPFLAGS="" LDFLAGS="" LIBS="" CXX="/nxb-bin/usr/bin/c++" CXXFLAGS="-O2 -pipe -fno-strict-aliasing " MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" --End MAKE_ENV-- --PLIST_SUB-- OSREL=12.0 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local PORTDOCS="" PORTEXAMPLES="" LIB32DIR=lib DOCSDIR="share/doc/migrate" EXAMPLESDIR="share/examples/migrate" DATADIR="share/migrate" WWWDIR="www/migrate" ETCDIR="etc/migrate" --End PLIST_SUB-- --SUB_LIST-- PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/migrate DOCSDIR=/usr/local/share/doc/migrate EXAMPLESDIR=/usr/local/share/examples/migrate WWWDIR=/usr/local/www/migrate ETCDIR=/usr/local/etc/migrate --End SUB_LIST-- ---Begin make.conf--- .sinclude "/etc/make.nxb.conf" USE_PACKAGE_DEPENDS=yes BATCH=yes WRKDIRPREFIX=/wrkdirs PORTSDIR=/usr/ports PACKAGES=/packages DISTDIR=/distfiles PACKAGE_BUILDING=yes MACHINE=arm MACHINE_ARCH=armv6 ARCH=${MACHINE_ARCH} #### /usr/local/etc/poudriere.d/make.conf #### # XXX: We really need this but cannot use it while 'make checksum' does not # try the next mirror on checksum failure. It currently retries the same # failed mirror and then fails rather then trying another. It *does* # try the next if the size is mismatched though. #MASTER_SITE_FREEBSD=yes # Build ALLOW_MAKE_JOBS_PACKAGES with 2 jobs MAKE_JOBS_NUMBER=2 #### /usr/ports/Mk/Scripts/ports_env.sh #### ARCH=armv6 CONFIGURE_MAX_CMD_LEN=262144 OPSYS=FreeBSD OSREL=12.0 OSVERSION=1200038 PYTHONBASE=/usr/local UID=0 _JAVA_OS_LIST_REGEXP=native|linux _JAVA_VENDOR_LIST_REGEXP=openjdk|oracle|sun _JAVA_VERSION_LIST_REGEXP=1.6|1.7|1.8|1.6\+|1.7\+|1.8\+ _OSRELEASE=12.0-CURRENT #### Misc Poudriere #### GID=0 DISABLE_MAKE_JOBS=poudriere ---End make.conf--- ---Begin make.nxb.conf--- CC=/nxb-bin/usr/bin/cc CPP=/nxb-bin/usr/bin/cpp CXX=/nxb-bin/usr/bin/c++ AS=/nxb-bin/usr/bin/as NM=/nxb-bin/usr/bin/nm LD=/nxb-bin/usr/bin/ld OBJCOPY=/nxb-bin/usr/bin/objcopy SIZE=/nxb-bin/usr/bin/size STRIPBIN=/nxb-bin/usr/bin/strip SED=/nxb-bin/usr/bin/sed READELF=/nxb-bin/usr/bin/readelf RANLIB=/nxb-bin/usr/bin/ranlib YACC=/nxb-bin/usr/bin/yacc MAKE=/nxb-bin/usr/bin/make STRINGS=/nxb-bin/usr/bin/strings AWK=/nxb-bin/usr/bin/awk FLEX=/nxb-bin/usr/bin/flex ---End make.nxb.conf--- --Resource limits-- cpu time (seconds, -t) unlimited file size (512-blocks, -f) unlimited data seg size (kbytes, -d) 33554432 stack size (kbytes, -s) 524288 core file size (512-blocks, -c) unlimited max memory size (kbytes, -m) unlimited locked memory (kbytes, -l) unlimited max user processes (-u) 89999 open files (-n) 1024 virtual mem size (kbytes, -v) unlimited swap limit (kbytes, -w) unlimited socket buffer size (bytes, -b) unlimited pseudo-terminals (-p) unlimited kqueues (-k) unlimited umtx shared locks (-o) unlimited --End resource limits-- =================================================== ===> NOTICE: The migrate port currently does not have a maintainer. As a result, it is more likely to have unresolved issues, not be up-to-date, or even be removed in the future. To volunteer to maintain this port, please create an issue at: https://bugs.freebsd.org/bugzilla More information about port maintainership is available at: https://www.freebsd.org/doc/en/articles/contributing/ports-contributing.html#maintain-port =========================================================================== =================================================== ===> migrate-3.6.11 depends on file: /usr/local/sbin/pkg - not found ===> Installing existing package /packages/All/pkg-1.10.1.txz yes checking how to run the C preprocessor... /nxb-bin/usr/bin/cpp qemu: unsupported syscall: 552 (calling anyway) qemu: unsupported syscall: 552 (calling anyway) qemu: unsupported syscall: 551 (calling anyway) qemu: unsupported syscall: 552 (calling anyway) qemu: unsupported syscall: 552 (calling anyway) qemu: unsupported syscall: 552 (calling anyway) qemu: unsupported syscall: 552 (calling anyway) qemu: unsupported syscall: 551 (calling anyway) qemu: unsupported syscall: 551 (calling anyway) qemu: unsupported syscall: 551 (calling anyway) qemu: unsupported syscall: 551 (calling anyway) qemu: unsupported syscall: 551 (calling anyway) qemu: unsupported syscall: 551 (calling anyway) qemu: unsupported syscall: 551 (calling anyway) checking for grep that handles long lines and -e... (cached) /usr/bin/grep checking for egrep... (cached) /usr/bin/egrep checking for ANSI C header files... (cached) yes checking for sys/types.h... (cached) yes checking for sys/stat.h... (cached) yes checking for stdlib.h... (cached) yes checking for string.h... (cached) yes checking for memory.h... (cached) yes checking for strings.h... (cached) yes checking for inttypes.h... (cached) yes checking for stdint.h... (cached) yes checking for unistd.h... (cached) yes checking for limits.h... (cached) yes checking for strings.h... (cached) yes checking pthread.h usability... yes checking pthread.h presence... yes checking for pthread.h... yes qemu: unsupported syscall: 552 (calling anyway) qemu: unsupported syscall: 552 (calling anyway) qemu: unsupported syscall: 551 (calling anyway) qemu: unsupported syscall: 552 (calling anyway) qemu: unsupported syscall: 552 (calling anyway) qemu: unsupported syscall: 552 (calling anyway) qemu: unsupported syscall: 552 (calling anyway) qemu: unsupported syscall: 551 (calling anyway) qemu: unsupported syscall: 551 (calling anyway) qemu: unsupported syscall: 551 (calling anyway) checking for an ANSI C-conforming const... yes checking for size_t... (cached) yes checking for int... (cached) yes checking whether struct tm is in sys/time.h or time.h... time.h checking for inline... inline checking return type of signal handlers... qemu: unsupported syscall: 552 (calling anyway) qemu: unsupported syscall: 552 (calling anyway) qemu: unsupported syscall: 551 (calling anyway) qemu: unsupported syscall: 552 (calling anyway) qemu: unsupported syscall: 552 (calling anyway) qemu: unsupported syscall: 552 (calling anyway) qemu: unsupported syscall: 552 (calling anyway) qemu: unsupported syscall: 551 (calling anyway) qemu: unsupported syscall: 551 (calling anyway) qemu: unsupported syscall: 551 (calling anyway) qemu: unsupported syscall: 551 (calling anyway) qemu: unsupported syscall: 551 (calling anyway) qemu: unsupported syscall: 551 (calling anyway) qemu: unsupported syscall: 551 (calling anyway) void checking for strftime... (cached) yes checking for strcspn... (cached) yes checking for strsep... (cached) yes qemu: unsupported syscall: 552 (calling anyway) qemu: unsupported syscall: 552 (calling anyway) qemu: unsupported syscall: 551 (calling anyway) qemu: unsupported syscall: 552 (calling anyway) qemu: unsupported syscall: 552 (calling anyway) qemu: unsupported syscall: 552 (calling anyway) qemu: unsupported syscall: 552 (calling anyway) qemu: unsupported syscall: 551 (calling anyway) qemu: unsupported syscall: 551 (calling anyway) qemu: unsupported syscall: 551 (calling anyway) checking for lgamma... qemu: unsupported syscall: 552 (calling anyway) qemu: unsupported syscall: 552 (calling anyway) qemu: unsupported syscall: 551 (calling anyway) qemu: unsupported syscall: 552 (calling anyway) qemu: unsupported syscall: 552 (calling anyway) qemu: unsupported syscall: 552 (calling anyway) qemu: unsupported syscall: 552 (calling anyway) qemu: unsupported syscall: 551 (calling anyway) qemu: unsupported syscall: 551 (calling anyway) qemu: unsupported syscall: 551 (calling anyway) qemu: unsupported syscall: 551 (calling anyway) qemu: unsupported syscall: 551 (calling anyway) qemu: unsupported syscall: 551 (calling anyway) qemu: unsupported syscall: 551 (calling anyway) yes checking which zlib implementation to use... autodetect checking for main in -lz... yes checking for gzbuffer... qemu: unsupported syscall: 552 (calling anyway) qemu: unsupported syscall: 552 (calling anyway) qemu: unsupported syscall: 551 (calling anyway) qemu: unsupported syscall: 552 (calling anyway) qemu: unsupported syscall: 552 (calling anyway) qemu: unsupported syscall: 552 (calling anyway) qemu: unsupported syscall: 552 (calling anyway) qemu: unsupported syscall: 551 (calling anyway) qemu: unsupported syscall: 551 (calling anyway) qemu: unsupported syscall: 551 (calling anyway) qemu: unsupported syscall: 551 (calling anyway) qemu: unsupported syscall: 551 (calling anyway) qemu: unsupported syscall: 551 (calling anyway) qemu: unsupported syscall: 551 (calling anyway) no configure: creating ./config.status qemu: unsupported syscall: 552 (calling anyway) qemu: unsupported syscall: 552 (calling anyway) qemu: unsupported syscall: 551 (calling anyway) qemu: unsupported syscall: 552 (calling anyway) qemu: unsupported syscall: 552 (calling anyway) qemu: unsupported syscall: 552 (calling anyway) qemu: unsupported syscall: 552 (calling anyway) qemu: unsupported syscall: 551 (calling anyway) qemu: unsupported syscall: 551 (calling anyway) qemu: unsupported syscall: 551 (calling anyway) qemu: unsupported syscall: 551 (calling anyway) qemu: unsupported syscall: 551 (calling anyway) qemu: unsupported syscall: 551 (calling anyway) qemu: unsupported syscall: 551 (calling anyway) qemu: unsupported syscall: 552 (calling anyway) qemu: unsupported syscall: 552 (calling anyway) qemu: unsupported syscall: 551 (calling anyway) qemu: unsupported syscall: 552 (calling anyway) qemu: unsupported syscall: 552 (calling anyway) qemu: unsupported syscall: 552 (calling anyway) qemu: unsupported syscall: 552 (calling anyway) qemu: unsupported syscall: 551 (calling anyway) qemu: unsupported syscall: 551 (calling anyway) qemu: unsupported syscall: 551 (calling anyway) qemu: unsupported syscall: 551 (calling anyway) qemu: unsupported syscall: 551 (calling anyway) qemu: unsupported syscall: 551 (calling anyway) qemu: unsupported syscall: 551 (calling anyway) qemu: unsupported syscall: 552 (calling anyway) qemu: unsupported syscall: 552 (calling anyway) qemu: unsupported syscall: 551 (calling anyway) qemu: unsupported syscall: 552 (calling anyway) qemu: unsupported syscall: 552 (calling anyway) qemu: unsupported syscall: 552 (calling anyway) qemu: unsupported syscall: 552 (calling anyway) qemu: unsupported syscall: 551 (calling anyway) qemu: unsupported syscall: 551 (calling anyway) qemu: unsupported syscall: 551 (calling anyway) qemu: unsupported syscall: 551 (calling anyway) config.status: creating Makefile config.status: creating conf.h config.status: conf.h is unchanged MIGRATE-N is now setup to compile the program you need to type one of the commands below (ordered by preference): SINGLE CPU machines make # with PDF output support # this might fail on first attempt, # if the make fails, please let me know # often linking fails because the C++ pdf library # and the core migrate parts (C) mismatch # check the Makefile line for STDLIB= -lstdc++ SMP machines more than 1 CPU in machine make thread # uses the thread library if present make # on macs running macos 10.6+ using GrandCentral PARALLEL Computers, Clusters with MPI software make mpis # each cpu-core can be treated as a node make mpis-thread # experimental, may increase load per node! ------------------------------------------------------------------------ SPEED and other TESTING the migrate website contains a testsuite.tar.gz that has many tests for single, parallel and thread compilations the tests are driven by a python script rt (see the README in the testsuite) and a submit script that allows to streamline submissions to a batch queue system, currently supported systems are SUN/ORACLE GRIDENGINE, TORQUE/MOAB, and NONE ------------------------------------------------------------------------ In case there are problems with the compile send a message to the migrate-support@google.com usergroup, include a log of ./configure make ======================================================================= =========================================================================== =================================================== ===> Building for migrate-3.6.11 (cd ./haru ; /nxb-bin/usr/bin/make -f makefile. "CC=/nxb-bin/usr/bin/c++" "CPP=/nxb-bin/usr/bin/cc" "ARCH=armv6" "MACOSVERSION=" "MYCPPFLAGS=-O2 -pipe -fno-strict-aliasing -DNOJPEG -DNOZLIB -DNOPNG -Iharu -DPRETTY -lstdc++ ") make[2]: cannot open makefile.. make[2]: stopped in /wrkdirs/usr/ports/biology/migrate/work/migrate-3.6.11/src/haru *** Error code 2 Stop. make[1]: stopped in /wrkdirs/usr/ports/biology/migrate/work/migrate-3.6.11/src *** Error code 1 Stop. make: stopped in /usr/ports/biology/migrate