From owner-freebsd-ports-bugs@FreeBSD.ORG Tue Oct 26 06:50:25 2004 Return-Path: Delivered-To: freebsd-ports-bugs@hub.freebsd.org Received: from mx1.FreeBSD.org (mx1.freebsd.org [216.136.204.125]) by hub.freebsd.org (Postfix) with ESMTP id 96E0616A4D0 for ; Tue, 26 Oct 2004 06:50:25 +0000 (GMT) Received: from freefall.freebsd.org (freefall.freebsd.org [216.136.204.21]) by mx1.FreeBSD.org (Postfix) with ESMTP id 626F043D1D for ; Tue, 26 Oct 2004 06:50:25 +0000 (GMT) (envelope-from gnats@FreeBSD.org) Received: from freefall.freebsd.org (gnats@localhost [127.0.0.1]) i9Q6oPQr022027 for ; Tue, 26 Oct 2004 06:50:25 GMT (envelope-from gnats@freefall.freebsd.org) Received: (from gnats@localhost) by freefall.freebsd.org (8.12.11/8.12.11/Submit) id i9Q6oPv7022026; Tue, 26 Oct 2004 06:50:25 GMT (envelope-from gnats) Resent-Date: Tue, 26 Oct 2004 06:50:25 GMT Resent-Message-Id: <200410260650.i9Q6oPv7022026@freefall.freebsd.org> Resent-From: FreeBSD-gnats-submit@FreeBSD.org (GNATS Filer) Resent-To: freebsd-ports-bugs@FreeBSD.org Resent-Reply-To: FreeBSD-gnats-submit@FreeBSD.org, "Choe, Cheng-Dae" Received: from mx1.FreeBSD.org (mx1.freebsd.org [216.136.204.125]) by hub.freebsd.org (Postfix) with ESMTP id 1367B16A4CE for ; Tue, 26 Oct 2004 06:46:18 +0000 (GMT) Received: from www.freebsd.org (www.freebsd.org [216.136.204.117]) by mx1.FreeBSD.org (Postfix) with ESMTP id EBCD843D46 for ; Tue, 26 Oct 2004 06:46:17 +0000 (GMT) (envelope-from nobody@FreeBSD.org) Received: from www.freebsd.org (localhost [127.0.0.1]) by www.freebsd.org (8.12.11/8.12.11) with ESMTP id i9Q6kHGm040609 for ; Tue, 26 Oct 2004 06:46:17 GMT (envelope-from nobody@www.freebsd.org) Received: (from nobody@localhost) by www.freebsd.org (8.12.11/8.12.11/Submit) id i9Q6kHEd040608; Tue, 26 Oct 2004 06:46:17 GMT (envelope-from nobody) Message-Id: <200410260646.i9Q6kHEd040608@www.freebsd.org> Date: Tue, 26 Oct 2004 06:46:17 GMT From: "Choe, Cheng-Dae" To: freebsd-gnats-submit@FreeBSD.org X-Send-Pr-Version: www-2.3 Subject: ports/73149: [New ports]: biology/mpiblast X-BeenThere: freebsd-ports-bugs@freebsd.org X-Mailman-Version: 2.1.1 Precedence: list List-Id: Ports bug reports List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , X-List-Received-Date: Tue, 26 Oct 2004 06:50:25 -0000 >Number: 73149 >Category: ports >Synopsis: [New ports]: biology/mpiblast >Confidential: no >Severity: non-critical >Priority: medium >Responsible: freebsd-ports-bugs >State: open >Quarter: >Keywords: >Date-Required: >Class: change-request >Submitter-Id: current-users >Arrival-Date: Tue Oct 26 06:50:24 GMT 2004 >Closed-Date: >Last-Modified: >Originator: "Choe, Cheng-Dae" >Release: FreeBSD 4.10-STABLE i386 >Organization: >Environment: System: FreeBSD c2.neurogenex.com 4.10-STABLE FreeBSD 4.10-STABLE #9: Mon Oct 25 16:28:09 KST 2004 root@c2.neurogenex.com:/usr/obj/usr/src/sys/C2 i386 >Description: new ports mpiblast, that mpi parallel version of NCBI BLAST. >How-To-Repeat: N/A >Fix: # This is a shell archive. Save it in a file, remove anything before # this line, and then unpack it by entering "sh file". Note, it may # create directories; files and directories will be owned by you and # have default permissions. # # This archive contains: # # mpiblast/Makefile # mpiblast/distinfo # mpiblast/files # mpiblast/pkg-descr # mpiblast/pkg-message # mpiblast/pkg-plist # echo x - mpiblast/Makefile sed 's/^X//' >mpiblast/Makefile << 'END-of-mpiblast/Makefile' X# New ports collection makefile for: mpiblast X# Date created: 23 October 2004 X# Whom: whitekid X# X# $FreeBSD$ X# X XPORTNAME= mpiblast XPORTVERSION= 1.2.1 XPORTREVISION= 0 XCATEGORIES= biology parallel XMASTER_SITES= http://mpiblast.lanl.gov/releases/ XDISTNAME= mpiBLAST-${PORTVERSION} X XMAINTAINER= whitekid@gmail.com XCOMMENT= A parallelization for NCBI BLAST X XBUILD_DEPENDS= ${NONEXISTENT}:${PORTSDIR}/biology/ncbi-toolkit:build \ X ${LOCALBASE}/include/mpi.h:${PORTSDIR}/net/lam X XGNU_CONFIGURE= yes X XCONFIGURE_ARGS= --with-ncbi=${PORTSDIR}/biology/ncbi-toolkit/work/ncbi X XDOCS= AUTHORS COPYING ChangeLog INSTALL LICENSE NEWS README TODO XDATAS= WWWBlastWrap.pl X Xpost-install: X @${INSTALL_DATA} ${WRKSRC}/mpiblast.conf ${PREFIX}/etc/mpiblast.conf.sample X X.if !defined(NOPORTDOCS) X @${MKDIR} ${DOCSDIR} X.for file in ${DOCS} X @${INSTALL_DATA} ${WRKSRC}/${file} ${DOCSDIR} X.endfor X X @${MKDIR} ${DATADIR} X.for file in ${DATAS} X @${INSTALL_DATA} ${WRKSRC}/${file} ${DATADIR} X.endfor X.endif X X.include END-of-mpiblast/Makefile echo x - mpiblast/distinfo sed 's/^X//' >mpiblast/distinfo << 'END-of-mpiblast/distinfo' XMD5 (mpiBLAST-1.2.1.tar.gz) = 7724f4fbdcecd00d0cc597214efd54e1 XSIZE (mpiBLAST-1.2.1.tar.gz) = 170513 END-of-mpiblast/distinfo echo c - mpiblast/files mkdir -p mpiblast/files > /dev/null 2>&1 echo x - mpiblast/pkg-descr sed 's/^X//' >mpiblast/pkg-descr << 'END-of-mpiblast/pkg-descr' XmpiBLAST is a freely available open source parallelization of NCBI BLAST. XmpiBLAST segments the BLAST database and distributes it across cluster nodes, Xpermitting BLAST queries to be processed on many nodes simultaneously. mpiBLAST Xis based on MPI. The current release runs under Linux and Windows, and will Xprobably work on other varieties of Unix as well. X XWWW: http://mpiblast.lanl.gov/ END-of-mpiblast/pkg-descr echo x - mpiblast/pkg-message sed 's/^X//' >mpiblast/pkg-message << 'END-of-mpiblast/pkg-message' X-------------------------------------------------------------------------- X XThe mpiBLAST package has been successfully installed. X XNB: A sample configuration file has been installed to %%PREFIX%%/etc as X"mpiblast.conf.sample". This may be renamed to "mpiblast.conf" and edited Xto suit the requirements of a particular site. X XPlease read %%DOCSDIR%%/README file for detail. X X-------------------------------------------------------------------------- END-of-mpiblast/pkg-message echo x - mpiblast/pkg-plist sed 's/^X//' >mpiblast/pkg-plist << 'END-of-mpiblast/pkg-plist' Xbin/mpiblast Xbin/mpiformatdb Xetc/mpiblast.conf Xetc/mpiblast.conf.sample X%%PORTDOCS%%%%DOCSDIR%%/AUTHORS X%%PORTDOCS%%%%DOCSDIR%%/COPYING X%%PORTDOCS%%%%DOCSDIR%%/ChangeLog X%%PORTDOCS%%%%DOCSDIR%%/INSTALL X%%PORTDOCS%%%%DOCSDIR%%/LICENSE X%%PORTDOCS%%%%DOCSDIR%%/NEWS X%%PORTDOCS%%%%DOCSDIR%%/README X%%PORTDOCS%%%%DOCSDIR%%/TODO X%%DATADIR%%/WWWBlastWrap.pl X@dirrm %%DATADIR%% X@dirrm %%DOCSDIR%% END-of-mpiblast/pkg-plist exit >Release-Note: >Audit-Trail: >Unformatted: