Date: Wed, 11 Feb 2015 18:29:35 GMT From: pkg-fallout@FreeBSD.org To: bofh@FreeBSD.org Cc: pkg-fallout@FreeBSD.org Subject: [package - 10amd64-default][biology/seaview] Failed for seaview-4.5.2_1, 1 in build Message-ID: <201502111829.t1BITZNr027894@beefy2.isc.freebsd.org>
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You are receiving this mail as a port that you maintain is failing to build on the FreeBSD package build server. Please investigate the failure and submit a PR to fix build. Maintainer: bofh@FreeBSD.org Last committer: bofh@FreeBSD.org Ident: $FreeBSD: head/biology/seaview/Makefile 375378 2014-12-24 00:14:11Z bofh $ Log URL: http://beefy2.isc.freebsd.org/data/10amd64-default/2015-02-11_08h14m11s/logs/seaview-4.5.2_1,1.log Build URL: http://beefy2.isc.freebsd.org/build.html?mastername=10amd64-default&build=2015-02-11_08h14m11s Log: ====>> Building biology/seaview build started at Wed Feb 11 18:29:15 UTC 2015 port directory: /usr/ports/biology/seaview building for: FreeBSD 10amd64-default-job-24 10.0-RELEASE-p9 FreeBSD 10.0-RELEASE-p9 amd64 maintained by: bofh@FreeBSD.org Makefile ident: $FreeBSD: head/biology/seaview/Makefile 375378 2014-12-24 00:14:11Z bofh $ Poudriere version: 3.1.1 Host OSVERSION: 1100058 Jail OSVERSION: 1000510 ---Begin Environment--- OSVERSION=1000510 UNAME_v=FreeBSD 10.0-RELEASE-p9 UNAME_r=10.0-RELEASE-p9 BLOCKSIZE=K MAIL=/var/mail/root STATUS=1 SAVED_TERM= MASTERMNT=/usr/local/poudriere/data/.m/10amd64-default/ref PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/games:/usr/local/sbin:/usr/local/bin:/root/bin POUDRIERE_BUILD_TYPE=bulk PKGNAME=seaview-4.5.2_1,1 OLDPWD=/ PWD=/usr/local/poudriere/data/.m/10amd64-default/ref/.p/pool MASTERNAME=10amd64-default USER=root HOME=/root POUDRIERE_VERSION=3.1.1 LOCALBASE=/usr/local PACKAGE_BUILDING=yes ---End Environment--- ---Begin OPTIONS List--- ===> The following configuration options are available for seaview-4.5.2_1,1: PDFLIB=on: PDFlib support ===> Use 'make config' to modify these settings ---End OPTIONS List--- --CONFIGURE_ARGS-- --End CONFIGURE_ARGS-- --CONFIGURE_ENV-- XDG_DATA_HOME=/wrkdirs/usr/ports/biology/seaview/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/seaview/work HOME=/wrkdirs/usr/ports/biology/seaview/work TMPDIR="/tmp" MAKE=gmake SHELL=/bin/sh CONFIG_SHELL=/bin/sh --End CONFIGURE_ENV-- --MAKE_ENV-- HELPFILE='-DDEFAULT_HELPFILE=\"/usr/local/share/seaview/seaview.html\"' PHYMLNAME='-DPHYMLNAME=\"phyml\"' IFLTK='-I/usr/local/include' LFLTK='-L/usr/local/lib' USE_XFT='-DUSE_XFT' OPT="-O2 -pipe -fstack-protector -fno-strict-aliasing" XDG_DATA_HOME=/wrkdirs/usr/ports/biology/seaview/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/seaview/work HOME=/wrkdirs/usr/ports/biology/seaview/work TMPDIR="/tmp" LPDF='-L/usr/local/lib -lpdf' NO_PIE=yes SHELL=/bin/sh NO_LINT=YES PREFIX=/usr/local LOCALBASE=/usr/local LIBDIR="/usr/lib" CC="cc" CFLAGS="-O2 -pipe -fstack-protector -fno-strict-aliasing" CPP="cpp" CPPFLAGS="" LDFLAGS=" -fstack-protector" LIBS="" CXX="c++" CXXFLAGS="-O2 -pipe -fstack-protector -fno-strict-aliasing" MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -o root -g wheel -m 555" BSD_INSTALL_LIB="install -s -o root -g wheel -m 444" BSD_INSTALL_SCRIPT="install -o root -g wheel -m 555" BSD_INSTALL_DATA="install -o root -g wheel -m 0644" BSD_INSTALL_MAN ="install -o root -g wheel -m 444" --End MAKE_ENV-- --PLIST_SUB-- OSREL=10.0 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local PORTDOCS="" PORTEXAMPLES="" LIB32DIR=lib DOCSDIR="share/doc/seaview" EXAMPLESDIR="share/examples/seaview" DATADIR="share/seaview" WWWDIR="www/seaview" ETCDIR="etc/seaview" --End PLIST_SUB-- --SUB_LIST-- PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/seaview DOCSDIR=/usr/local/share/doc/seaview EXAMPLESDIR=/usr/local/share/examples/seaview WWWDIR=/usr/local/www/seaview ETCDIR=/usr/local/etc/seaview --End SUB_LIST-- ---Begin make.conf--- USE_PACKAGE_DEPENDS=yes BATCH=yes WRKDIRPREFIX=/wrkdirs USE_PACKAGE_DEPENDS=yes BATCH=yes WRKDIRPREFIX=/wrkdirs PORTSDIR=/usr/ports PACKAGES=/packages DISTDIR=/distfiles #### /usr/local/etc/poudriere.d/make.conf #### WITH_PKGNG=yes #WITH_PKGNG=devel # clean-restricted ran via poudriere.conf NO_RESTRICTED #NO_RESTRICTED=yes DISABLE_MAKE_JOBS=poudriere ---End make.conf--- =======================<phase: check-sanity >============================ =========================================================================== =======================<phase: pkg-depends >============================ ===> seaview-4.5.2_1,1 depends on file: /usr/local/sbin/pkg - not found ===> Verifying install for /usr/local/sbin/pkg in /usr/ports/ports-mgmt/pkg ===> Installing existing package /packages/All/pkg-1.4.10.txz [10amd64-default-job-24] Installing pkg-1.4.10... [10amd64-default-job-24] Extracting pkg-1.4.10... done Message for pkg-1.4.10: If you are upgrading from the old package format, first run: # pkg2ng ===> Returning to build of seaview-4.5.2_1,1 =========================================================================== =======================<phase: fetch-depends >============================ =========================================================================== =======================<phase: fetch >============================ ===> Fetching all distfiles required by seaview-4.5.2_1,1 for building =========================================================================== =======================<phase: checksum >============================ ===> Fetching all distfiles required by seaview-4.5.2_1,1 for building => SHA256 Checksum OK for seaview_4.5.2.tar.gz. =========================================================================== =======================<phase: extract-depends>============================ =========================================================================== =======================<phase: extract >============================ ===> Fetching all distfiles required by seaview-4.5.2_1,1 for building ===> Extracting for seaview-4.5.2_1,1 => SHA256 Checksum OK for seaview_4.5.2.tar.gz. =========================================================================== =======================<phase: patch-depends >============================ =========================================================================== =======================<phase: patch >============================ ===> Patching for seaview-4.5.2_1,1 =========================================================================== =======================<phase: build-depends >============================ ===> seaview-4.5.2_1,1 depends on executable: gmake - not found ===> Verifying install for gmake in /usr/ports/devel/gmake ===> Installing existing package /packages/All/gmake-4.1_1.txz [10amd64-default-job-24] Installing gmake-4.1_1... [10amd64-default-job-24] `-- Installing gettext-runtime-0.19.4... [10amd64-default-job-24] | `-- Installing indexinfo-0.2.2... [10amd64-default-job-24] | `-- Extracting indexinfo-0.2.2... done [10amd64-default-job-24] `-- Extracting gettext-runtime-0.19.4... done [10amd64-default-job-24] Extracting gmake-4.1_1... done ===> Returning to build of seaview-4.5.2_1,1 ===> seaview-4.5.2_1,1 depends on file: /usr/local/libdata/pkgconfig/xext.pc - not found ===> Verifying install for /usr/local/libdata/pkgconfig/xext.pc in /usr/ports/x11/libXext ===> Installing existing package /packages/All/libXext-1.3.3,1.txz [10amd64-default-job-24] Installing libXext-1.3.3,1... [10amd64-default-job-24] `-- Installing libX11-1.6.2_2,1... [10amd64-default-job-24] | `-- Installing kbproto-1.0.6... [10amd64-default-job-24] | `-- Extracting kbproto-1.0.6... done [10amd64-default-job-24] | `-- Installing libXau-1.0.8_2... [10amd64-default-job-24] | | `-- Installing xproto-7.0.26... [10amd64-default-job-24] | | `-- Extracting xproto-7.0.26... done [10amd64-default-job-24] | `-- Extracting libXau-1.0.8_2... done [10amd64-default-job-24] | `-- Installing libXdmcp-1.1.1_2... [10amd64-default-job-24] | `-- Extracting libXdmcp-1.1.1_2... done [10amd64-default-job-24] | `-- Installing libxcb-1.11... [10amd64-default-job-24] | | `-- Installing libpthread-stubs-0.3_6... [10amd64-default-job-24] | | `-- Extracting libpthread-stubs-0.3_6... done [10amd64-default-job-24] | | `-- Installing libxml2-2.9.2_2... [10amd64-default-job-24] | | `-- Extracting libxml2-2.9.2_2... done [10amd64-default-job-24] | `-- Extracting libxcb-1.11... done [10amd64-default-job-24] `-- Extracting libX11-1.6.2_2,1... done [10amd64-default-job-24] `-- Installing xextproto-7.3.0... [10amd64-default-job-24] `-- Extracting xextproto-7.3.0... done [10amd64-default-job-24] Extracting libXext-1.3.3,1... done ===> Returning to build of seaview-4.5.2_1,1 ===> seaview-4.5.2_1,1 depends on file: /usr/local/libdata/pkgconfig/xft.pc - not found ===> Verifying install for /usr/local/libdata/pkgconfig/xft.pc in /usr/ports/x11-fonts/libXft ===> Installing existing package /packages/All/libXft-2.3.2.txz [10amd64-default-job-24] Installing libXft-2.3.2... [10amd64-default-job-24] `-- Installing fontconfig-2.11.1,1... [10amd64-default-job-24] | `-- Installing expat-2.1.0_2... [10amd64-default-job-24] | `-- Extracting expat-2.1.0_2... done [10amd64-default-job-24] | `-- Installing freetype2-2.5.5... [10amd64-default-job-24] | `-- Extracting freetype2-2.5.5... done [10amd64-default-job-24] `-- Extracting fontconfig-2.11.1,1... done Running fc-cache to build fontconfig cache... /usr/local/share/fonts: skipping, no such directory /usr/local/lib/X11/fonts: skipping, no such directory /root/.local/share/fonts: skipping, no such directory /root/.fonts: skipping, no such directory /var/db/fontconfig: cleaning cache directory /root/.cache/fontconfig: not cleaning non-existent cache directory /root/.fontconfig: not cleaning non-existent cache directory fc-cache: succeeded [10amd64-default-job-24] `-- Installing libXrender-0.9.8_2... [10amd64-default-job-24] | `-- Installing renderproto-0.11.1... [10amd64-default-job-24] | `-- Extracting renderproto-0.11.1... done [10amd64-default-job-24] `-- Extracting libXrender-0.9.8_2... done [10amd64-default-job-24] Extracting libXft-2.3.2... done ===> Returning to build of seaview-4.5.2_1,1 ===> seaview-4.5.2_1,1 depends on file: /usr/local/libdata/pkgconfig/xinerama.pc - not found ===> Verifying install for /usr/local/libdata/pkgconfig/xinerama.pc in /usr/ports/x11/libXinerama ===> Installing existing package /packages/All/libXinerama-1.1.3_2,1.txz [10amd64-default-job-24] Installing libXinerama-1.1.3_2,1... [10amd64-default-job-24] `-- Installing xineramaproto-1.2.1... [10amd64-default-job-24] `-- Extracting xineramaproto-1.2.1... done [10amd64-default-job-24] Extracting libXinerama-1.1.3_2,1... done ===> Returning to build of seaview-4.5.2_1,1 =========================================================================== =======================<phase: lib-depends >============================ ===> seaview-4.5.2_1,1 depends on shared library: libfltk.so - not found ===> Verifying for libfltk.so in /usr/ports/x11-toolkits/fltk ===> Installing existing package /packages/All/fltk-1.3.3_2.txz [10amd64-default-job-24] Installing fltk-1.3.3_2... [10amd64-default-job-24] `-- Installing jpeg-8_6... [10amd64-default-job-24] `-- Extracting jpeg-8_6... done [10amd64-default-job-24] `-- Installing libGLU-9.0.0_2... [10amd64-default-job-24] | `-- Installing libGL-9.1.7_4... [10amd64-default-job-24] | | `-- Installing dri2proto-2.8... [10amd64-default-job-24] | | `-- Extracting dri2proto-2.8... done [10amd64-default-job-24] | | `-- Installing libXdamage-1.1.4_2... [10amd64-default-job-24] | | `-- Installing damageproto-1.2.1... [10amd64-default-job-24] | | `-- Extracting damageproto-1.2.1... done [10amd64-default-job-24] | | `-- Installing libXfixes-5.0.1_2... [10amd64-default-job-24] | | | `-- Installing fixesproto-5.0... [10amd64-default-job-24] | | | `-- Extracting fixesproto-5.0... done [10amd64-default-job-24] | | `-- Extracting libXfixes-5.0.1_2... done [10amd64-default-job-24] | | `-- Extracting libXdamage-1.1.4_2... done [10amd64-default-job-24] | | `-- Installing libXxf86vm-1.1.3_2... [10amd64-default-job-24] | | `-- Installing xf86vidmodeproto-2.3.1... [10amd64-default-job-24] | | `-- Extracting xf86vidmodeproto-2.3.1... done [10amd64-default-job-24] | | `-- Extracting libXxf86vm-1.1.3_2... done [10amd64-default-job-24] | | `-- Installing libdevq-0.0.2... [10amd64-default-job-24] | | `-- Extracting libdevq-0.0.2... done [10amd64-default-job-24] | | `-- Installing libdrm-2.4.58_1,1... [10amd64-default-job-24] | | `-- Installing libpciaccess-0.13.2_2... [10amd64-default-job-24] | | | `-- Installing pciids-20150124... [10amd64-default-job-24] | | | `-- Extracting pciids-20150124... done [10amd64-default-job-24] | | `-- Extracting libpciaccess-0.13.2_2... done [10amd64-default-job-24] | | `-- Extracting libdrm-2.4.58_1,1... done [10amd64-default-job-24] | | `-- Installing libglapi-9.1.7_2... [10amd64-default-job-24] | | `-- Installing libxshmfence-1.1_3... [10amd64-default-job-24] | | `-- Extracting libxshmfence-1.1_3... done [10amd64-default-job-24] | | `-- Extracting libglapi-9.1.7_2... done [10amd64-default-job-24] | `-- Extracting libGL-9.1.7_4... done [10amd64-default-job-24] `-- Extracting libGLU-9.0.0_2... done [10amd64-default-job-24] `-- Installing png-1.6.16... [10amd64-default-job-24] `-- Extracting png-1.6.16... done [10amd64-default-job-24] Extracting fltk-1.3.3_2... done ===> Returning to build of seaview-4.5.2_1,1 ===> seaview-4.5.2_1,1 depends on shared library: libpdf.so - not found ===> Verifying for libpdf.so in /usr/ports/print/pdflib ===> Installing existing package /packages/All/pdflib-7.0.5_4.txz [10amd64-default-job-24] Installing pdflib-7.0.5_4... [10amd64-default-job-24] Extracting pdflib-7.0.5_4... done ===> Returning to build of seaview-4.5.2_1,1 =========================================================================== =======================<phase: configure >============================ ===> Configuring for seaview-4.5.2_1,1 =========================================================================== =======================<phase: build >============================ ===> Building for seaview-4.5.2_1,1 gmake[1]: Entering directory '/wrkdirs/usr/ports/biology/seaview/work/seaview' c++ -c -O2 -pipe -fstack-protector -fno-strict-aliasing -Dunix -O2 -pipe -fstack-protector -fno-strict-aliasing -I/usr/local/include -Icsrc -I. -DDEFAULT_HELPFILE=\"/usr/local/share/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" -DFl_Native_File_Chooser=mgFl_Native_File_Chooser seaview.cxx c++ -c -O2 -pipe -fstack-protector -fno-strict-aliasing -Dunix -O2 -pipe -fstack-protector -fno-strict-aliasing -I/usr/local/include -Icsrc -I. -DDEFAULT_HELPFILE=\"/usr/local/share/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" -DFl_Native_File_Chooser=mgFl_Native_File_Chooser custom.cxx c++ -c -O2 -pipe -fstack-protector -fno-strict-aliasing -Dunix -O2 -pipe -fstack-protector -fno-strict-aliasing -I/usr/local/include -Icsrc -I. -DDEFAULT_HELPFILE=\"/usr/local/share/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" -DFl_Native_File_Chooser=mgFl_Native_File_Chooser use_mase_files.cxx c++ -c -O2 -pipe -fstack-protector -fno-strict-aliasing -Dunix -O2 -pipe -fstack-protector -fno-strict-aliasing -I/usr/local/include -Icsrc -I. -DDEFAULT_HELPFILE=\"/usr/local/share/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" -DFl_Native_File_Chooser=mgFl_Native_File_Chooser regions.cxx c++ -c -O2 -pipe -fstack-protector -fno-strict-aliasing -Dunix -O2 -pipe -fstack-protector -fno-strict-aliasing -I/usr/local/include -Icsrc -I. -DDEFAULT_HELPFILE=\"/usr/local/share/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" -DFl_Native_File_Chooser=mgFl_Native_File_Chooser load_seq.cxx c++ -c -O2 -pipe -fstack-protector -fno-strict-aliasing -Dunix -O2 -pipe -fstack-protector -fno-strict-aliasing -I/usr/local/include -Icsrc -I. -DDEFAULT_HELPFILE=\"/usr/local/share/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" -DFl_Native_File_Chooser=mgFl_Native_File_Chooser align.cxx c++ -c -O2 -pipe -fstack-protector -fno-strict-aliasing -Dunix -O2 -pipe -fstack-protector -fno-strict-aliasing -I/usr/local/include -Icsrc -I. -DDEFAULT_HELPFILE=\"/usr/local/share/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" -DFl_Native_File_Chooser=mgFl_Native_File_Chooser xfmatpt.cxx c++ -c -O2 -pipe -fstack-protector -fno-strict-aliasing -Dunix -O2 -pipe -fstack-protector -fno-strict-aliasing -I/usr/local/include -Icsrc -I. -DDEFAULT_HELPFILE=\"/usr/local/share/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" -DFl_Native_File_Chooser=mgFl_Native_File_Chooser comlines.cxx c++ -c -O2 -pipe -fstack-protector -fno-strict-aliasing -Dunix -O2 -pipe -fstack-protector -fno-strict-aliasing -I/usr/local/include -Icsrc -I. -DDEFAULT_HELPFILE=\"/usr/local/share/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" -DFl_Native_File_Chooser=mgFl_Native_File_Chooser resource.cxx c++ -c -O2 -pipe -fstack-protector -fno-strict-aliasing -Dunix -O2 -pipe -fstack-protector -fno-strict-aliasing -I/usr/local/include -Icsrc -I. -DDEFAULT_HELPFILE=\"/usr/local/share/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" -DFl_Native_File_Chooser=mgFl_Native_File_Chooser nexus.cxx c++ -c -O2 -pipe -fstack-protector -fno-strict-aliasing -Dunix -O2 -pipe -fstack-protector -fno-strict-aliasing -I/usr/local/include -Icsrc -I. -DDEFAULT_HELPFILE=\"/usr/local/share/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" -DFl_Native_File_Chooser=mgFl_Native_File_Chooser viewasprots.cxx c++ -c -O2 -pipe -fstack-protector -fno-strict-aliasing -Dunix -O2 -pipe -fstack-protector -fno-strict-aliasing -I/usr/local/include -Icsrc -I. -DDEFAULT_HELPFILE=\"/usr/local/share/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" -DFl_Native_File_Chooser=mgFl_Native_File_Chooser racnuc_fetch.cxx racnuc_fetch.cxx:311:51: warning: cast to 'void *' from smaller integer type 'int' [-Wint-to-pointer-cast] raa_fields->key_choice->add(name + 2, 0, NULL, (void *)num); ^ 1 warning generated. c++ -c -O2 -pipe -fstack-protector -fno-strict-aliasing -Dunix -O2 -pipe -fstack-protector -fno-strict-aliasing -I/usr/local/include -Icsrc -I. -DDEFAULT_HELPFILE=\"/usr/local/share/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" -DFl_Native_File_Chooser=mgFl_Native_File_Chooser concatenate.cxx c++ -c -O2 -pipe -fstack-protector -fno-strict-aliasing -Dunix -O2 -pipe -fstack-protector -fno-strict-aliasing -I/usr/local/include -Icsrc -I. -DDEFAULT_HELPFILE=\"/usr/local/share/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" -DFl_Native_File_Chooser=mgFl_Native_File_Chooser statistics.cxx c++ -c -O2 -pipe -fstack-protector -fno-strict-aliasing -Dunix -O2 -pipe -fstack-protector -fno-strict-aliasing -I/usr/local/include -Icsrc -I. -DDEFAULT_HELPFILE=\"/usr/local/share/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" -DFl_Native_File_Chooser=mgFl_Native_File_Chooser trees.cxx c++ -c -O2 -pipe -fstack-protector -fno-strict-aliasing -Dunix -O2 -pipe -fstack-protector -fno-strict-aliasing -I/usr/local/include -Icsrc -I. -DDEFAULT_HELPFILE=\"/usr/local/share/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" -DFl_Native_File_Chooser=mgFl_Native_File_Chooser treedraw.cxx c++ -c -O2 -pipe -fstack-protector -fno-strict-aliasing -Dunix -O2 -pipe -fstack-protector -fno-strict-aliasing -I/usr/local/include -Icsrc -I. -DDEFAULT_HELPFILE=\"/usr/local/share/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" -DFl_Native_File_Chooser=mgFl_Native_File_Chooser addbootstrap.cxx c++ -c -O2 -pipe -fstack-protector -fno-strict-aliasing -Dunix -O2 -pipe -fstack-protector -fno-strict-aliasing -I/usr/local/include -Icsrc -I. -DDEFAULT_HELPFILE=\"/usr/local/share/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" -DFl_Native_File_Chooser=mgFl_Native_File_Chooser least_squares_brl.cxx c++ -c -O2 -pipe -fstack-protector -fno-strict-aliasing -Dunix -O2 -pipe -fstack-protector -fno-strict-aliasing -I/usr/local/include -Icsrc -I. -DDEFAULT_HELPFILE=\"/usr/local/share/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" -DFl_Native_File_Chooser=mgFl_Native_File_Chooser pseudoterminal.cxx c++ -c -O2 -pipe -fstack-protector -fno-strict-aliasing -Dunix -O2 -pipe -fstack-protector -fno-strict-aliasing -I/usr/local/include -Icsrc -I. -DDEFAULT_HELPFILE=\"/usr/local/share/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" -DFl_Native_File_Chooser=mgFl_Native_File_Chooser unrooted.cxx c++ -c -O2 -pipe -fstack-protector -fno-strict-aliasing -Dunix -O2 -pipe -fstack-protector -fno-strict-aliasing -I/usr/local/include -Icsrc -I. -DDEFAULT_HELPFILE=\"/usr/local/share/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" -DFl_Native_File_Chooser=mgFl_Native_File_Chooser pdf_or_ps.cxx c++ -c -O2 -pipe -fstack-protector -fno-strict-aliasing -Dunix -O2 -pipe -fstack-protector -fno-strict-aliasing -I/usr/local/include -Icsrc -I. -DDEFAULT_HELPFILE=\"/usr/local/share/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" -DFl_Native_File_Chooser=mgFl_Native_File_Chooser svg.cxx c++ -c -O2 -pipe -fstack-protector -fno-strict-aliasing -Dunix -O2 -pipe -fstack-protector -fno-strict-aliasing -I/usr/local/include -Icsrc -I. -DDEFAULT_HELPFILE=\"/usr/local/share/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" -DFl_Native_File_Chooser=mgFl_Native_File_Chooser threads.cxx c++ -c -I. -Dunix -O2 -pipe -fstack-protector -fno-strict-aliasing -I/usr/local/include -Icsrc -I. -DDEFAULT_HELPFILE=\"/usr/local/share/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" -DFl_Native_File_Chooser=mgFl_Native_File_Chooser FL/Fl_Native_File_Chooser_FLTK.cxx cc -c -O2 -pipe -fstack-protector -fno-strict-aliasing -O2 -pipe -fstack-protector -fno-strict-aliasing -Icsrc csrc/raa_acnuc.c cc -c -O2 -pipe -fstack-protector -fno-strict-aliasing -O2 -pipe -fstack-protector -fno-strict-aliasing -Icsrc csrc/parser.c cc -c -O2 -pipe -fstack-protector -fno-strict-aliasing -O2 -pipe -fstack-protector -fno-strict-aliasing -Icsrc csrc/md5.c cc -c -O2 -pipe -fstack-protector -fno-strict-aliasing -O2 -pipe -fstack-protector -fno-strict-aliasing -Icsrc csrc/zsockr.c cc -c -O2 -pipe -fstack-protector -fno-strict-aliasing -O2 -pipe -fstack-protector -fno-strict-aliasing -Icsrc csrc/misc_acnuc.c cc -c -O2 -pipe -fstack-protector -fno-strict-aliasing -O2 -pipe -fstack-protector -fno-strict-aliasing -Icsrc csrc/dnapars.c cc -c -O2 -pipe -fstack-protector -fno-strict-aliasing -O2 -pipe -fstack-protector -fno-strict-aliasing -Icsrc csrc/protpars.c cc -c -O2 -pipe -fstack-protector -fno-strict-aliasing -O2 -pipe -fstack-protector -fno-strict-aliasing -Icsrc csrc/seq.c cc -c -O2 -pipe -fstack-protector -fno-strict-aliasing -O2 -pipe -fstack-protector -fno-strict-aliasing -Icsrc csrc/phylip.c cc -c -O2 -pipe -fstack-protector -fno-strict-aliasing -O2 -pipe -fstack-protector -fno-strict-aliasing -Icsrc csrc/lwl.c cc -c -O2 -pipe -fstack-protector -fno-strict-aliasing -O2 -pipe -fstack-protector -fno-strict-aliasing -Icsrc csrc/bionj.c cc -c -O2 -pipe -fstack-protector -fno-strict-aliasing -O2 -pipe -fstack-protector -fno-strict-aliasing -Icsrc csrc/phyml_util.c c++ -o seaview -fstack-protector seaview.o custom.o use_mase_files.o regions.o load_seq.o align.o xfmatpt.o comlines.o resource.o nexus.o viewasprots.o racnuc_fetch.o concatenate.o statistics.o trees.o treedraw.o addbootstrap.o least_squares_brl.o pseudoterminal.o unrooted.o pdf_or_ps.o svg.o threads.o Fl_Native_File_Chooser_FLTK.o raa_acnuc.o parser.o md5.o zsockr.o misc_acnuc.o dnapars.o protpars.o seq.o phylip.o lwl.o bionj.o phyml_util.o \ -L/usr/local/lib -lfltk_images -lfltk \ -lXft -lXext -lfontconfig -ljpeg -lpng -lXinerama -L/usr/local/lib -lpdf \ -lX11 -lm -lz -pthread seaview.o: In function `clipboard_contains_alignment(char const*)': seaview.cxx:(.text+0x74db): undefined reference to `fl_selection_buffer' seaview.o: In function `edit_menu_callback(Fl_Widget*, void*)': seaview.cxx:(.text+0x78b9): undefined reference to `fl_selection_buffer' seaview.o: In function `handle_paste(_SEA_VIEW*, char*, int)': seaview.cxx:(.text+0xb35f): undefined reference to `fl_selection_buffer' c++: error: linker command failed with exit code 1 (use -v to see invocation) Makefile:44: recipe for target 'seaview' failed gmake[1]: *** [seaview] Error 1 gmake[1]: Leaving directory '/wrkdirs/usr/ports/biology/seaview/work/seaview' *** Error code 1 Stop. make: stopped in /usr/ports/biology/seaview
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