From nobody Fri Dec 15 12:55:59 2023 X-Original-To: dev-commits-ports-main@mlmmj.nyi.freebsd.org Received: from mx1.freebsd.org (mx1.freebsd.org [IPv6:2610:1c1:1:606c::19:1]) by mlmmj.nyi.freebsd.org (Postfix) with ESMTP id 4Ss8NJ0Cbzz52mC1; Fri, 15 Dec 2023 12:56:00 +0000 (UTC) (envelope-from git@FreeBSD.org) Received: from mxrelay.nyi.freebsd.org (mxrelay.nyi.freebsd.org [IPv6:2610:1c1:1:606c::19:3]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) key-exchange X25519 server-signature RSA-PSS (4096 bits) server-digest SHA256 client-signature RSA-PSS (4096 bits) client-digest SHA256) (Client CN "mxrelay.nyi.freebsd.org", Issuer "R3" (verified OK)) by mx1.freebsd.org (Postfix) with ESMTPS id 4Ss8NH6dVjz3g2J; Fri, 15 Dec 2023 12:55:59 +0000 (UTC) (envelope-from git@FreeBSD.org) DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=freebsd.org; s=dkim; t=1702644959; h=from:from:reply-to:subject:subject:date:date:message-id:message-id: to:to:cc:mime-version:mime-version:content-type:content-type: content-transfer-encoding:content-transfer-encoding; bh=mly7KY7z+Ei0m5WeRk23lX3P2B5VIdDpuC7FXNYihOM=; b=h8InRNO7kP85IIjmgyymjl2KQSrCWanPXoA99HSOLM+oLNzyg+VhmFm50mkvZYLfdZ2ozK 7olYT8AdX0CEFNjTSjbePpImP2QQNRLFgqREvcDhLijUlk307xFl5aFc5wTd1fkKfVFvKM XLP+b/zi0SqcvyaL4J1AqCDT4fghuFqV/uVfPaJm4pAALpSeXfKFJxDNjyUT0HxPRXnLP2 UEDkO9IuLmTr+SRGY0HshrQ+nkNWxJQ+43QPefj6JBb8d3vu/6JQD1YWz6PATBs1hZZDB0 h/YtAmM5RQkHGy18EiVbgu1LoJbguCfRled0VQe0A4ubHLBZG5IJPnQ0rPTjYQ== ARC-Seal: i=1; s=dkim; d=freebsd.org; t=1702644959; a=rsa-sha256; cv=none; b=hDeZTrmzBbgdDclZjJyIGjgwW0w0S1VlJ/u/xjlNLs/z2UYAwVIa2M7SSOmdVArlFPVO8E KrMsdHntQ/B+wO6iw6QFAf3hUdSqFpmpjFcsQxpeyQJFsS8iCDoz69phH3qp5UYhISsbIb hQHWN8oWket9i0+s77DtkHaGhYcmZNmSQXIR68bdhhzJvbWfwwbN8vGONDEjPj68MnO5/8 ev8TYnMc5eC0Ia0jmi6JiA7l0hPxz5stXTeWZxrtWsqe5m6h3geDHbs/eEB8vsVklKxtzA 5OlsHrPQwAs/ZPut1nOB0AENkAduQgggSTnDVgarH13QPHdaZWZTuqJbhjpADg== ARC-Authentication-Results: i=1; mx1.freebsd.org; none ARC-Message-Signature: i=1; a=rsa-sha256; c=relaxed/relaxed; d=freebsd.org; s=dkim; t=1702644959; h=from:from:reply-to:subject:subject:date:date:message-id:message-id: to:to:cc:mime-version:mime-version:content-type:content-type: content-transfer-encoding:content-transfer-encoding; bh=mly7KY7z+Ei0m5WeRk23lX3P2B5VIdDpuC7FXNYihOM=; b=teHbp9kzpiot8ffad84lt6w2ochR8AuV8Tdsp66N4u172UP1vsXvhZwnMZ4T+NcXOa/bNX 5awg0axzcxr4YYlD+Ok7u9+nb5uKNirMiZgP+h9hgyA6Vrv1XtuUb8bEmn9G/5NKCTwwN+ RO/DLwlM4BTA9PfNdWiNEeRW8drfDt9bxzKp2RjOfVYz/3HWd5c8e/RZvb0B+chb8j6JCd 5LaSZfX23IEDpzVuZGiDQjroV1a3gLbhMql/glLWiD1V5jeKw1VidyS0qIV94e+uOeSsCy SihGlnfbTnF9xTAaLuGJTZRqGW6EOgBGNpi+1nj/tdrCTSFxj7cVhymVo2NuDw== Received: from gitrepo.freebsd.org (gitrepo.freebsd.org [IPv6:2610:1c1:1:6068::e6a:5]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) key-exchange X25519 server-signature RSA-PSS (4096 bits) server-digest SHA256) (Client did not present a certificate) by mxrelay.nyi.freebsd.org (Postfix) with ESMTPS id 4Ss8NH5cwZz1BBL; Fri, 15 Dec 2023 12:55:59 +0000 (UTC) (envelope-from git@FreeBSD.org) Received: from gitrepo.freebsd.org ([127.0.1.44]) by gitrepo.freebsd.org (8.17.1/8.17.1) with ESMTP id 3BFCtxgY014039; Fri, 15 Dec 2023 12:55:59 GMT (envelope-from git@gitrepo.freebsd.org) Received: (from git@localhost) by gitrepo.freebsd.org (8.17.1/8.17.1/Submit) id 3BFCtxB9014036; Fri, 15 Dec 2023 12:55:59 GMT (envelope-from git) Date: Fri, 15 Dec 2023 12:55:59 GMT Message-Id: <202312151255.3BFCtxB9014036@gitrepo.freebsd.org> To: ports-committers@FreeBSD.org, dev-commits-ports-all@FreeBSD.org, dev-commits-ports-main@FreeBSD.org From: Muhammad Moinur Rahman Subject: git: 4cdc8520108c - main - biology/R-cran-BiocGenerics: New port List-Id: Commits to the main branch of the FreeBSD ports repository List-Archive: https://lists.freebsd.org/archives/dev-commits-ports-main List-Help: List-Post: List-Subscribe: List-Unsubscribe: Sender: owner-dev-commits-ports-main@freebsd.org X-BeenThere: dev-commits-ports-main@freebsd.org MIME-Version: 1.0 Content-Type: text/plain; charset=utf-8 Content-Transfer-Encoding: 8bit X-Git-Committer: bofh X-Git-Repository: ports X-Git-Refname: refs/heads/main X-Git-Reftype: branch X-Git-Commit: 4cdc8520108c7acd391ed663c51735918e48a9dd Auto-Submitted: auto-generated The branch main has been updated by bofh: URL: https://cgit.FreeBSD.org/ports/commit/?id=4cdc8520108c7acd391ed663c51735918e48a9dd commit 4cdc8520108c7acd391ed663c51735918e48a9dd Author: Muhammad Moinur Rahman AuthorDate: 2023-12-15 11:08:08 +0000 Commit: Muhammad Moinur Rahman CommitDate: 2023-12-15 12:55:44 +0000 biology/R-cran-BiocGenerics: New port The package defines many S4 generic functions used in Bioconductor. WWW: https://bioconductor.org/packages/release/bioc/html/BiocGenerics.html --- biology/Makefile | 1 + biology/R-cran-BiocGenerics/Makefile | 15 +++++++++++++++ biology/R-cran-BiocGenerics/distinfo | 3 +++ biology/R-cran-BiocGenerics/pkg-descr | 2 ++ 4 files changed, 21 insertions(+) diff --git a/biology/Makefile b/biology/Makefile index cbf07586368b..a1e02321c2a5 100644 --- a/biology/Makefile +++ b/biology/Makefile @@ -1,5 +1,6 @@ COMMENT = Biology + SUBDIR += R-cran-BiocGenerics SUBDIR += R-cran-BiocManager SUBDIR += abyss SUBDIR += ad2vcf diff --git a/biology/R-cran-BiocGenerics/Makefile b/biology/R-cran-BiocGenerics/Makefile new file mode 100644 index 000000000000..417a6fb2419f --- /dev/null +++ b/biology/R-cran-BiocGenerics/Makefile @@ -0,0 +1,15 @@ +PORTNAME= BiocGenerics +PORTVERSION= 0.48.1 +CATEGORIES= biology +MASTER_SITES= https://bioconductor.org/packages/release/bioc/src/contrib/ +DISTNAME= ${PORTNAME}_${PORTVERSION} + +MAINTAINER= bofh@FreeBSD.org +COMMENT= S4 generic functions used in Bioconductor +WWW= https://bioconductor.org/packages/release/bioc/html/BiocGenerics.html + +LICENSE= ART20 + +USES= cran:auto-plist,compiles + +.include diff --git a/biology/R-cran-BiocGenerics/distinfo b/biology/R-cran-BiocGenerics/distinfo new file mode 100644 index 000000000000..e6cf551768ef --- /dev/null +++ b/biology/R-cran-BiocGenerics/distinfo @@ -0,0 +1,3 @@ +TIMESTAMP = 1702637949 +SHA256 (BiocGenerics_0.48.1.tar.gz) = 13e126709da888420f320353d6ea52da12a8cbd086f2e29b9cc3039a6411652b +SIZE (BiocGenerics_0.48.1.tar.gz) = 49546 diff --git a/biology/R-cran-BiocGenerics/pkg-descr b/biology/R-cran-BiocGenerics/pkg-descr new file mode 100644 index 000000000000..691286abcbb4 --- /dev/null +++ b/biology/R-cran-BiocGenerics/pkg-descr @@ -0,0 +1,2 @@ +BiocGenerics is an R/Bioconductor package that defines many S4 generic functions +used in Bioconductor.