From nobody Fri Dec 15 12:55:59 2023
X-Original-To: dev-commits-ports-main@mlmmj.nyi.freebsd.org
Received: from mx1.freebsd.org (mx1.freebsd.org [IPv6:2610:1c1:1:606c::19:1])
by mlmmj.nyi.freebsd.org (Postfix) with ESMTP id 4Ss8NJ0Cbzz52mC1;
Fri, 15 Dec 2023 12:56:00 +0000 (UTC)
(envelope-from git@FreeBSD.org)
Received: from mxrelay.nyi.freebsd.org (mxrelay.nyi.freebsd.org [IPv6:2610:1c1:1:606c::19:3])
(using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits)
key-exchange X25519 server-signature RSA-PSS (4096 bits) server-digest SHA256
client-signature RSA-PSS (4096 bits) client-digest SHA256)
(Client CN "mxrelay.nyi.freebsd.org", Issuer "R3" (verified OK))
by mx1.freebsd.org (Postfix) with ESMTPS id 4Ss8NH6dVjz3g2J;
Fri, 15 Dec 2023 12:55:59 +0000 (UTC)
(envelope-from git@FreeBSD.org)
DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=freebsd.org; s=dkim;
t=1702644959;
h=from:from:reply-to:subject:subject:date:date:message-id:message-id:
to:to:cc:mime-version:mime-version:content-type:content-type:
content-transfer-encoding:content-transfer-encoding;
bh=mly7KY7z+Ei0m5WeRk23lX3P2B5VIdDpuC7FXNYihOM=;
b=h8InRNO7kP85IIjmgyymjl2KQSrCWanPXoA99HSOLM+oLNzyg+VhmFm50mkvZYLfdZ2ozK
7olYT8AdX0CEFNjTSjbePpImP2QQNRLFgqREvcDhLijUlk307xFl5aFc5wTd1fkKfVFvKM
XLP+b/zi0SqcvyaL4J1AqCDT4fghuFqV/uVfPaJm4pAALpSeXfKFJxDNjyUT0HxPRXnLP2
UEDkO9IuLmTr+SRGY0HshrQ+nkNWxJQ+43QPefj6JBb8d3vu/6JQD1YWz6PATBs1hZZDB0
h/YtAmM5RQkHGy18EiVbgu1LoJbguCfRled0VQe0A4ubHLBZG5IJPnQ0rPTjYQ==
ARC-Seal: i=1; s=dkim; d=freebsd.org; t=1702644959; a=rsa-sha256; cv=none;
b=hDeZTrmzBbgdDclZjJyIGjgwW0w0S1VlJ/u/xjlNLs/z2UYAwVIa2M7SSOmdVArlFPVO8E
KrMsdHntQ/B+wO6iw6QFAf3hUdSqFpmpjFcsQxpeyQJFsS8iCDoz69phH3qp5UYhISsbIb
hQHWN8oWket9i0+s77DtkHaGhYcmZNmSQXIR68bdhhzJvbWfwwbN8vGONDEjPj68MnO5/8
ev8TYnMc5eC0Ia0jmi6JiA7l0hPxz5stXTeWZxrtWsqe5m6h3geDHbs/eEB8vsVklKxtzA
5OlsHrPQwAs/ZPut1nOB0AENkAduQgggSTnDVgarH13QPHdaZWZTuqJbhjpADg==
ARC-Authentication-Results: i=1;
mx1.freebsd.org;
none
ARC-Message-Signature: i=1; a=rsa-sha256; c=relaxed/relaxed; d=freebsd.org;
s=dkim; t=1702644959;
h=from:from:reply-to:subject:subject:date:date:message-id:message-id:
to:to:cc:mime-version:mime-version:content-type:content-type:
content-transfer-encoding:content-transfer-encoding;
bh=mly7KY7z+Ei0m5WeRk23lX3P2B5VIdDpuC7FXNYihOM=;
b=teHbp9kzpiot8ffad84lt6w2ochR8AuV8Tdsp66N4u172UP1vsXvhZwnMZ4T+NcXOa/bNX
5awg0axzcxr4YYlD+Ok7u9+nb5uKNirMiZgP+h9hgyA6Vrv1XtuUb8bEmn9G/5NKCTwwN+
RO/DLwlM4BTA9PfNdWiNEeRW8drfDt9bxzKp2RjOfVYz/3HWd5c8e/RZvb0B+chb8j6JCd
5LaSZfX23IEDpzVuZGiDQjroV1a3gLbhMql/glLWiD1V5jeKw1VidyS0qIV94e+uOeSsCy
SihGlnfbTnF9xTAaLuGJTZRqGW6EOgBGNpi+1nj/tdrCTSFxj7cVhymVo2NuDw==
Received: from gitrepo.freebsd.org (gitrepo.freebsd.org [IPv6:2610:1c1:1:6068::e6a:5])
(using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits)
key-exchange X25519 server-signature RSA-PSS (4096 bits) server-digest SHA256)
(Client did not present a certificate)
by mxrelay.nyi.freebsd.org (Postfix) with ESMTPS id 4Ss8NH5cwZz1BBL;
Fri, 15 Dec 2023 12:55:59 +0000 (UTC)
(envelope-from git@FreeBSD.org)
Received: from gitrepo.freebsd.org ([127.0.1.44])
by gitrepo.freebsd.org (8.17.1/8.17.1) with ESMTP id 3BFCtxgY014039;
Fri, 15 Dec 2023 12:55:59 GMT
(envelope-from git@gitrepo.freebsd.org)
Received: (from git@localhost)
by gitrepo.freebsd.org (8.17.1/8.17.1/Submit) id 3BFCtxB9014036;
Fri, 15 Dec 2023 12:55:59 GMT
(envelope-from git)
Date: Fri, 15 Dec 2023 12:55:59 GMT
Message-Id: <202312151255.3BFCtxB9014036@gitrepo.freebsd.org>
To: ports-committers@FreeBSD.org, dev-commits-ports-all@FreeBSD.org,
dev-commits-ports-main@FreeBSD.org
From: Muhammad Moinur Rahman <bofh@FreeBSD.org>
Subject: git: 4cdc8520108c - main - biology/R-cran-BiocGenerics:
New port
List-Id: Commits to the main branch of the FreeBSD ports repository <dev-commits-ports-main.freebsd.org>
List-Archive: https://lists.freebsd.org/archives/dev-commits-ports-main
List-Help: <mailto:dev-commits-ports-main+help@freebsd.org>
List-Post: <mailto:dev-commits-ports-main@freebsd.org>
List-Subscribe: <mailto:dev-commits-ports-main+subscribe@freebsd.org>
List-Unsubscribe: <mailto:dev-commits-ports-main+unsubscribe@freebsd.org>
Sender: owner-dev-commits-ports-main@freebsd.org
X-BeenThere: dev-commits-ports-main@freebsd.org
MIME-Version: 1.0
Content-Type: text/plain; charset=utf-8
Content-Transfer-Encoding: 8bit
X-Git-Committer: bofh
X-Git-Repository: ports
X-Git-Refname: refs/heads/main
X-Git-Reftype: branch
X-Git-Commit: 4cdc8520108c7acd391ed663c51735918e48a9dd
Auto-Submitted: auto-generated
The branch main has been updated by bofh:
URL: https://cgit.FreeBSD.org/ports/commit/?id=4cdc8520108c7acd391ed663c51735918e48a9dd
commit 4cdc8520108c7acd391ed663c51735918e48a9dd
Author: Muhammad Moinur Rahman <bofh@FreeBSD.org>
AuthorDate: 2023-12-15 11:08:08 +0000
Commit: Muhammad Moinur Rahman <bofh@FreeBSD.org>
CommitDate: 2023-12-15 12:55:44 +0000
biology/R-cran-BiocGenerics: New port
The package defines many S4 generic functions used in Bioconductor.
WWW: https://bioconductor.org/packages/release/bioc/html/BiocGenerics.html
---
biology/Makefile | 1 +
biology/R-cran-BiocGenerics/Makefile | 15 +++++++++++++++
biology/R-cran-BiocGenerics/distinfo | 3 +++
biology/R-cran-BiocGenerics/pkg-descr | 2 ++
4 files changed, 21 insertions(+)
diff --git a/biology/Makefile b/biology/Makefile
index cbf07586368b..a1e02321c2a5 100644
--- a/biology/Makefile
+++ b/biology/Makefile
@@ -1,5 +1,6 @@
COMMENT = Biology
+ SUBDIR += R-cran-BiocGenerics
SUBDIR += R-cran-BiocManager
SUBDIR += abyss
SUBDIR += ad2vcf
diff --git a/biology/R-cran-BiocGenerics/Makefile b/biology/R-cran-BiocGenerics/Makefile
new file mode 100644
index 000000000000..417a6fb2419f
--- /dev/null
+++ b/biology/R-cran-BiocGenerics/Makefile
@@ -0,0 +1,15 @@
+PORTNAME= BiocGenerics
+PORTVERSION= 0.48.1
+CATEGORIES= biology
+MASTER_SITES= https://bioconductor.org/packages/release/bioc/src/contrib/
+DISTNAME= ${PORTNAME}_${PORTVERSION}
+
+MAINTAINER= bofh@FreeBSD.org
+COMMENT= S4 generic functions used in Bioconductor
+WWW= https://bioconductor.org/packages/release/bioc/html/BiocGenerics.html
+
+LICENSE= ART20
+
+USES= cran:auto-plist,compiles
+
+.include <bsd.port.mk>
diff --git a/biology/R-cran-BiocGenerics/distinfo b/biology/R-cran-BiocGenerics/distinfo
new file mode 100644
index 000000000000..e6cf551768ef
--- /dev/null
+++ b/biology/R-cran-BiocGenerics/distinfo
@@ -0,0 +1,3 @@
+TIMESTAMP = 1702637949
+SHA256 (BiocGenerics_0.48.1.tar.gz) = 13e126709da888420f320353d6ea52da12a8cbd086f2e29b9cc3039a6411652b
+SIZE (BiocGenerics_0.48.1.tar.gz) = 49546
diff --git a/biology/R-cran-BiocGenerics/pkg-descr b/biology/R-cran-BiocGenerics/pkg-descr
new file mode 100644
index 000000000000..691286abcbb4
--- /dev/null
+++ b/biology/R-cran-BiocGenerics/pkg-descr
@@ -0,0 +1,2 @@
+BiocGenerics is an R/Bioconductor package that defines many S4 generic functions
+used in Bioconductor.