From owner-freebsd-pkg-fallout@freebsd.org Mon Aug 17 04:27:11 2015 Return-Path: Delivered-To: freebsd-pkg-fallout@mailman.ysv.freebsd.org Received: from mx1.freebsd.org (mx1.freebsd.org [IPv6:2001:1900:2254:206a::19:1]) by mailman.ysv.freebsd.org (Postfix) with ESMTP id 58AFF9B75EF for ; Mon, 17 Aug 2015 04:27:11 +0000 (UTC) (envelope-from pkg-fallout@FreeBSD.org) Received: from mailman.ysv.freebsd.org (mailman.ysv.freebsd.org [IPv6:2001:1900:2254:206a::50:5]) by mx1.freebsd.org (Postfix) with ESMTP id 418BC19C4 for ; Mon, 17 Aug 2015 04:27:11 +0000 (UTC) (envelope-from pkg-fallout@FreeBSD.org) Received: by mailman.ysv.freebsd.org (Postfix) id 400E99B75EE; Mon, 17 Aug 2015 04:27:11 +0000 (UTC) Delivered-To: pkg-fallout@mailman.ysv.freebsd.org Received: from mx1.freebsd.org (mx1.freebsd.org [IPv6:2001:1900:2254:206a::19:1]) by mailman.ysv.freebsd.org (Postfix) with ESMTP id 2731C9B75ED for ; Mon, 17 Aug 2015 04:27:11 +0000 (UTC) (envelope-from pkg-fallout@FreeBSD.org) Received: from beefy8.nyi.freebsd.org (beefy8.nyi.freebsd.org [IPv6:2610:1c1:1:6080::16:eb]) (using TLSv1.2 with cipher ECDHE-RSA-AES256-GCM-SHA384 (256/256 bits)) (Client did not present a certificate) by mx1.freebsd.org (Postfix) with ESMTPS id E090219C3 for ; Mon, 17 Aug 2015 04:27:10 +0000 (UTC) (envelope-from pkg-fallout@FreeBSD.org) Received: from beefy8.nyi.freebsd.org (localhost [127.0.0.1]) by beefy8.nyi.freebsd.org (8.15.2/8.15.2) with ESMTP id t7H4R9sg096934 for ; Mon, 17 Aug 2015 04:27:09 GMT (envelope-from pkg-fallout@FreeBSD.org) Received: (from root@localhost) by beefy8.nyi.freebsd.org (8.15.2/8.15.2/Submit) id t7H4R99h096926; Mon, 17 Aug 2015 04:27:09 GMT (envelope-from pkg-fallout@FreeBSD.org) Date: Mon, 17 Aug 2015 04:27:09 GMT From: pkg-fallout@FreeBSD.org Message-Id: <201508170427.t7H4R99h096926@beefy8.nyi.freebsd.org> To: pkg-fallout@FreeBSD.org Subject: [package - head-armv6-default][biology/libsbml] Failed for libsbml-5.11.4 in configure X-BeenThere: freebsd-pkg-fallout@freebsd.org X-Mailman-Version: 2.1.20 Precedence: list List-Id: Fallout logs from package building List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , X-List-Received-Date: Mon, 17 Aug 2015 04:27:11 -0000 You are receiving this mail as a port that you maintain is failing to build on the FreeBSD package build server. Please investigate the failure and submit a PR to fix build. Maintainer: ports@FreeBSD.org Last committer: wen@FreeBSD.org Ident: $FreeBSD: head/biology/libsbml/Makefile 386129 2015-05-12 08:58:14Z wen $ Log URL: http://beefy8.nyi.freebsd.org/data/head-armv6-default/p394335_s286812/logs/libsbml-5.11.4.log Build URL: http://beefy8.nyi.freebsd.org/build.html?mastername=head-armv6-default&build=p394335_s286812 Log: ====>> Building biology/libsbml build started at Mon Aug 17 04:26:44 UTC 2015 port directory: /usr/ports/biology/libsbml building for: FreeBSD head-armv6-default-job-22 11.0-CURRENT FreeBSD 11.0-CURRENT r286812 arm maintained by: ports@FreeBSD.org Makefile ident: $FreeBSD: head/biology/libsbml/Makefile 386129 2015-05-12 08:58:14Z wen $ Poudriere version: 3.1.7 Host OSVERSION: 1100077 Jail OSVERSION: 1100078 !!! Jail is newer than host. (Jail: 1100078, Host: 1100077) !!! !!! This is not supported. !!! !!! Host kernel must be same or newer than jail. !!! !!! Expect build failures. !!! ---Begin Environment--- SHELL=/bin/csh UNAME_p=armv6 UNAME_m=arm ABI_FILE=/usr/lib/crt1.o OSVERSION=1100078 UNAME_v=FreeBSD 11.0-CURRENT r286812 UNAME_r=11.0-CURRENT LC_COLLATE=C BLOCKSIZE=K MAIL=/var/mail/root STATUS=1 SAVED_TERM=screen MASTERMNT=/usr/local/poudriere/data/.m/head-armv6-default/ref PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin POUDRIERE_BUILD_TYPE=bulk PKGNAME=libsbml-5.11.4 OLDPWD=/ PWD=/usr/local/poudriere/data/.m/head-armv6-default/ref/.p/pool MASTERNAME=head-armv6-default SCRIPTPREFIX=/usr/local/share/poudriere USER=root HOME=/root POUDRIERE_VERSION=3.1.7 SCRIPTPATH=/usr/local/share/poudriere/bulk.sh LIBEXECPREFIX=/usr/local/libexec/poudriere LOCALBASE=/usr/local PACKAGE_BUILDING=yes ---End Environment--- ---Begin OPTIONS List--- ===> The following configuration options are available for libsbml-5.11.4: EXAMPLES=on: Build and/or install examples PYTHON=off: Python bindings or support RUBY=off: Ruby bindings or support ===> Use 'make config' to modify these settings ---End OPTIONS List--- --CONFIGURE_ARGS-- --End CONFIGURE_ARGS-- --CONFIGURE_ENV-- XDG_DATA_HOME=/wrkdirs/usr/ports/biology/libsbml/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/libsbml/work HOME=/wrkdirs/usr/ports/biology/libsbml/work TMPDIR="/tmp" SHELL=/bin/sh CONFIG_SHELL=/bin/sh --End CONFIGURE_ENV-- --MAKE_ENV-- XDG_DATA_HOME=/wrkdirs/usr/ports/biology/libsbml/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/libsbml/work HOME=/wrkdirs/usr/ports/biology/libsbml/work TMPDIR="/tmp" NO_PIE=yes SHELL=/bin/sh NO_LINT=YES PREFIX=/usr/local LOCALBASE=/usr/local LIBDIR="/usr/lib" CC="/nxb-bin/usr/bin/cc" CFLAGS="-O2 -pipe -mfloat-abi=softfp -I/usr/include -fno-strict-aliasing" CPP="/nxb-bin/usr/bin/cpp" CPPFLAGS="" LDFLAGS=" -L/usr/lib" LIBS="" CXX="/nxb-bin/usr/bin/c++" CXXFLAGS="-O2 -pipe -mfloat-abi=softfp -I/usr/include -fno-strict-aliasing " MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 444" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" --End MAKE_ENV-- --PLIST_SUB-- EXAMPLES="" NO_EXAMPLES="@comment " PYTHON="@comment " NO_PYTHON="" RUBY="@comment " NO_RUBY="" CMAKE_BUILD_TYPE="release" OSREL=11.0 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local PORTDOCS="" PORTEXAMPLES="" LIB32DIR=lib GTK2_VERSION="2.10.0" GTK3_VERSION="3.0.0" DOCSDIR="share/doc/libsbml" EXAMPLESDIR="share/examples/libsbml" DATADIR="share/libsbml" WWWDIR="www/libsbml" ETCDIR="etc/libsbml" --End PLIST_SUB-- --SUB_LIST-- EXAMPLES="" NO_EXAMPLES="@comment " PYTHON="@comment " NO_PYTHON="" RUBY="@comment " NO_RUBY="" PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/libsbml DOCSDIR=/usr/local/share/doc/libsbml EXAMPLESDIR=/usr/local/share/examples/libsbml WWWDIR=/usr/local/www/libsbml ETCDIR=/usr/local/etc/libsbml --End SUB_LIST-- ---Begin make.conf--- CC=/nxb-bin/usr/bin/cc CPP=/nxb-bin/usr/bin/cpp CXX=/nxb-bin/usr/bin/c++ AS=/nxb-bin/usr/bin/as NM=/nxb-bin/usr/bin/nm LD=/nxb-bin/usr/bin/ld OBJCOPY=/nxb-bin/usr/bin/objcopy SIZE=/nxb-bin/usr/bin/size STRIPBIN=/nxb-bin/usr/bin/strip SED=/nxb-bin/usr/bin/sed READELF=/nxb-bin/usr/bin/readelf RANLIB=/nxb-bin/usr/bin/ranlib YACC=/nxb-bin/usr/bin/yacc NM=/nxb-bin/usr/bin/nm MAKE=/nxb-bin/usr/bin/make STRINGS=/nxb-bin/usr/bin/strings AWK=/nxb-bin/usr/bin/awk FLEX=/nxb-bin/usr/bin/flex CC=/nxb-bin/usr/bin/cc CPP=/nxb-bin/usr/bin/cpp CXX=/nxb-bin/usr/bin/c++ AS=/nxb-bin/usr/bin/as NM=/nxb-bin/usr/bin/nm LD=/nxb-bin/usr/bin/ld OBJCOPY=/nxb-bin/usr/bin/objcopy SIZE=/nxb-bin/usr/bin/size STRIPBIN=/nxb-bin/usr/bin/strip SED=/nxb-bin/usr/bin/sed READELF=/nxb-bin/usr/bin/readelf RANLIB=/nxb-bin/usr/bin/ranlib YACC=/nxb-bin/usr/bin/yacc NM=/nxb-bin/usr/bin/nm MAKE=/nxb-bin/usr/bin/make STRINGS=/nxb-bin/usr/bin/strings AWK=/nxb-bin/usr/bin/awk FLEX=/nxb-bin/usr/bin/flex CC=/nxb-bin/usr/bin/cc CPP=/nxb-bin/usr/bin/cpp CXX=/nxb-bin/usr/bin/c++ AS=/nxb-bin/usr/bin/as NM=/nxb-bin/usr/bin/nm LD=/nxb-bin/usr/bin/ld OBJCOPY=/nxb-bin/usr/bin/objcopy SIZE=/nxb-bin/usr/bin/size STRIPBIN=/nxb-bin/usr/bin/strip SED=/nxb-bin/usr/bin/sed READELF=/nxb-bin/usr/bin/readelf RANLIB=/nxb-bin/usr/bin/ranlib YACC=/nxb-bin/usr/bin/yacc NM=/nxb-bin/usr/bin/nm MAKE=/nxb-bin/usr/bin/make STRINGS=/nxb-bin/usr/bin/strings AWK=/nxb-bin/usr/bin/awk FLEX=/nxb-bin/usr/bin/flex CC=/nxb-bin/usr/bin/cc CPP=/nxb-bin/usr/bin/cpp CXX=/nxb-bin/usr/bin/c++ AS=/nxb-bin/usr/bin/as NM=/nxb-bin/usr/bin/nm LD=/nxb-bin/usr/bin/ld OBJCOPY=/nxb-bin/usr/bin/objcopy SIZE=/nxb-bin/usr/bin/size STRIPBIN=/nxb-bin/usr/bin/strip SED=/nxb-bin/usr/bin/sed READELF=/nxb-bin/usr/bin/readelf RANLIB=/nxb-bin/usr/bin/ranlib YACC=/nxb-bin/usr/bin/yacc NM=/nxb-bin/usr/bin/nm MAKE=/nxb-bin/usr/bin/make STRINGS=/nxb-bin/usr/bin/strings AWK=/nxb-bin/usr/bin/awk FLEX=/nxb-bin/usr/bin/flex CC=/nxb-bin/usr/bin/cc CPP=/nxb-bin/usr/bin/cpp CXX=/nxb-bin/usr/bin/c++ AS=/nxb-bin/usr/bin/as NM=/nxb-bin/usr/bin/nm LD=/nxb-bin/usr/bin/ld OBJCOPY=/nxb-bin/usr/bin/objcopy SIZE=/nxb-bin/usr/bin/size STRIPBIN=/nxb-bin/usr/bin/strip SED=/nxb-bin/usr/bin/sed AWK=/nxb-bin/usr/bin/awk FLEX=/nxb-bin/usr/bin/flex CC=/nxb-bin/usr/bin/cc CPP=/nxb-bin/usr/bin/cpp CXX=/nxb-bin/usr/bin/c++ AS=/nxb-bin/usr/bin/as NM=/nxb-bin/usr/bin/nm LD=/nxb-bin/usr/bin/ld OBJCOPY=/nxb-bin/usr/bin/objcopy SIZE=/nxb-bin/usr/bin/size STRIPBIN=/nxb-bin/usr/bin/strip SED=/nxb-bin/usr/bin/sed READELF=/nxb-bin/usr/bin/readelf RANLIB=/nxb-bin/usr/bin/ranlib YACC=/nxb-bin/usr/bin/yacc NM=/nxb-bin/usr/bin/nm MAKE=/nxb-bin/usr/bin/make STRINGS=/nxb-bin/usr/bin/strings AWK=/nxb-bin/usr/bin/awk FLEX=/nxb-bin/usr/bin/flex MACHINE=arm MACHINE_ARCH=armv6 ARCH=${MACHINE_ARCH} USE_PACKAGE_DEPENDS=yes BATCH=yes WRKDIRPREFIX=/wrkdirs PORTSDIR=/usr/ports PACKAGES=/packages DISTDIR=/distfiles #### /usr/local/etc/poudriere.d/make.conf #### DISABLE_MAKE_JOBS=poudriere ---End make.conf--- =================================================== ===> License LGPL21 accepted by the user =========================================================================== =================================================== ===> libsbml-5.11.4 depends on file: /usr/local/sbin/pkg - not found ===> Installing existing package /packages/All/pkg-1.5.6.txz [head-armv6-default-job-22] Installing pkg-1.5.6... [head-armv6-default-job-22] Extracting pkg-1.5.6: .......... done Message for pkg-1.5.6: If you are upgrading from the old package format, first run: # pkg2ng ===> libsbml-5.11.4 depends on file: /usr/local/sbin/pkg - found ===> Returning to build of libsbml-5.11.4 =========================================================================== =================================================== =========================================================================== =================================================== ===> License LGPL21 accepted by the user ===> Fetching all distfiles required by libsbml-5.11.4 for building =========================================================================== =================================================== ===> License LGPL21 accepted by the user ===> Fetching all distfiles required by libsbml-5.11.4 for building => SHA256 Checksum OK for libSBML-5.11.4-core-src.tar.gz. =========================================================================== =================================================== =========================================================================== =================================================== ===> License LGPL21 accepted by the user ===> Fetching all distfiles required by libsbml-5.11.4 for building ===> Extracting for libsbml-5.11.4 => SHA256 Checksum OK for libSBML-5.11.4-core-src.tar.gz. =========================================================================== =================================================== =========================================================================== =================================================== ===> Patching for libsbml-5.11.4 =========================================================================== =================================================== ===> libsbml-5.11.4 depends on file: /usr/local/bin/cmake - not found ===> Installing existing package /packages/All/cmake-3.2.3_2.txz [head-armv6-default-job-22] Installing cmake-3.2.3_2... [head-armv6-default-job-22] `-- Installing cmake-modules-3.2.3... [head-armv6-default-job-22] `-- Extracting cmake-modules-3.2.3: .......... done [head-armv6-default-job-22] `-- Installing curl-7.44.0... [head-armv6-default-job-22] | `-- Installing ca_root_nss-3.19.3... [head-armv6-default-job-22] | `-- Extracting ca_root_nss-3.19.3: ....... done [head-armv6-default-job-22] `-- Extracting curl-7.44.0: .......... done [head-armv6-default-job-22] `-- Installing expat-2.1.0_3... [head-armv6-default-job-22] `-- Extracting expat-2.1.0_3: .......... done [head-armv6-default-job-22] `-- Installing jsoncpp-0.6.0.r2_2... [head-armv6-default-job-22] `-- Extracting jsoncpp-0.6.0.r2_2: .......... done [head-armv6-default-job-22] `-- Installing libarchive-3.1.2_4,1... [head-armv6-default-job-22] | `-- Installing lzo2-2.09... [head-armv6-default-job-22] | `-- Extracting lzo2-2.09: .......... done [head-armv6-default-job-22] `-- Extracting libarchive-3.1.2_4,1: .......... done [head-armv6-default-job-22] Extracting cmake-3.2.3_2: .......... done Message for ca_root_nss-3.19.3: ********************************* WARNING ********************************* FreeBSD does not, and can not warrant that the certification authorities whose certificates are included in this package have in any way been audited for trustworthiness or RFC 3647 compliance. Assessment and verification of trust is the complete responsibility of the system administrator. *********************************** NOTE ********************************** This package installs symlinks to support root certificates discovery by default for software that uses OpenSSL. This enables SSL Certificate Verification by client software without manual intervention. If you prefer to do this manually, replace the following symlinks with either an empty file or your site-local certificate bundle. * /etc/ssl/cert.pem * /usr/local/etc/ssl/cert.pem * /usr/local/openssl/cert.pem *************************************************************************** ===> libsbml-5.11.4 depends on file: /usr/local/bin/cmake - found ===> Returning to build of libsbml-5.11.4 =========================================================================== =================================================== ===> libsbml-5.11.4 depends on shared library: libxml2.so - not found ===> Installing existing package /packages/All/libxml2-2.9.2_3.txz [head-armv6-default-job-22] Installing libxml2-2.9.2_3... [head-armv6-default-job-22] Extracting libxml2-2.9.2_3: .......... done ===> libsbml-5.11.4 depends on shared library: libxml2.so - found (/usr/local/lib/libxml2.so) ===> Returning to build of libsbml-5.11.4 =========================================================================== =================================================== ===> Configuring for libsbml-5.11.4 ===> FreeBSD 10 autotools fix applied to /wrkdirs/usr/ports/biology/libsbml/work/libsbml-5.11.4/config/libtool.m4 ===> FreeBSD 10 autotools fix applied to /wrkdirs/usr/ports/biology/libsbml/work/libsbml-5.11.4/configure ===> Performing out-of-source build /bin/mkdir -p /wrkdirs/usr/ports/biology/libsbml/work/.build -- The C compiler identification is Clang 3.6.1 -- The CXX compiler identification is Clang 3.6.1 -- Check for working C compiler: /nxb-bin/usr/bin/cc CMake Error: Generator: execution of make failed. Make command was: "/usr/bin/make" "cmTryCompileExec1362874792/fast" -- Check for working C compiler: /nxb-bin/usr/bin/cc -- broken CMake Error at /usr/local/share/cmake/Modules/CMakeTestCCompiler.cmake:61 (message): The C compiler "/nxb-bin/usr/bin/cc" is not able to compile a simple test program. It fails with the following output: Change Dir: /wrkdirs/usr/ports/biology/libsbml/work/.build/CMakeFiles/CMakeTmp Run Build Command:"/usr/bin/make" "cmTryCompileExec1362874792/fast" /nxb-bin/usr/bin/make -f CMakeFiles/cmTryCompileExec1362874792.dir/build.make CMakeFiles/cmTryCompileExec1362874792.dir/build /usr/local/bin/cmake -E cmake_progress_report /wrkdirs/usr/ports/biology/libsbml/work/.build/CMakeFiles/CMakeTmp/CMakeFiles 1 Building C object CMakeFiles/cmTryCompileExec1362874792.dir/testCCompiler.c.o /nxb-bin/usr/bin/cc -O2 -pipe -mfloat-abi=softfp -I/usr/include -fno-strict-aliasing -o CMakeFiles/cmTryCompileExec1362874792.dir/testCCompiler.c.o -c /wrkdirs/usr/ports/biology/libsbml/work/.build/CMakeFiles/CMakeTmp/testCCompiler.c Linking C executable cmTryCompileExec1362874792 /usr/local/bin/cmake -E cmake_link_script CMakeFiles/cmTryCompileExec1362874792.dir/link.txt --verbose=1 /nxb-bin/usr/bin/cc -O2 -pipe -mfloat-abi=softfp -I/usr/include -fno-strict-aliasing CMakeFiles/cmTryCompileExec1362874792.dir/testCCompiler.c.o -o cmTryCompileExec1362874792 Process terminated due to timeout Generator: execution of make failed. Make command was: "/usr/bin/make" "cmTryCompileExec1362874792/fast" CMake will not be able to correctly generate this project. Call Stack (most recent call first): CMakeLists.txt:35 (project) -- Configuring incomplete, errors occurred! See also "/wrkdirs/usr/ports/biology/libsbml/work/.build/CMakeFiles/CMakeOutput.log". See also "/wrkdirs/usr/ports/biology/libsbml/work/.build/CMakeFiles/CMakeError.log". *** Error code 1 Stop. make: stopped in /usr/ports/biology/libsbml