From nobody Mon Jan 6 16:31:22 2025 X-Original-To: dev-commits-ports-all@mlmmj.nyi.freebsd.org Received: from mx1.freebsd.org (mx1.freebsd.org [IPv6:2610:1c1:1:606c::19:1]) by mlmmj.nyi.freebsd.org (Postfix) with ESMTP id 4YRfnk5ltXz5jpcv; Mon, 06 Jan 2025 16:31:22 +0000 (UTC) (envelope-from git@FreeBSD.org) Received: from mxrelay.nyi.freebsd.org (mxrelay.nyi.freebsd.org [IPv6:2610:1c1:1:606c::19:3]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) key-exchange X25519 server-signature RSA-PSS (4096 bits) server-digest SHA256 client-signature RSA-PSS (4096 bits) client-digest SHA256) (Client CN "mxrelay.nyi.freebsd.org", Issuer "R11" (verified OK)) by mx1.freebsd.org (Postfix) with ESMTPS id 4YRfnk59LQz42Sj; Mon, 6 Jan 2025 16:31:22 +0000 (UTC) (envelope-from git@FreeBSD.org) DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=freebsd.org; s=dkim; t=1736181082; h=from:from:reply-to:subject:subject:date:date:message-id:message-id: to:to:cc:mime-version:mime-version:content-type:content-type: content-transfer-encoding:content-transfer-encoding; bh=NIG2KR32IYcUy5ZUi3XON75DPE6NbWYBA8yv7Nafexw=; b=a/1Vf/bsrbJwBWViUGJVqeyplJXyiziLvhH0xycW1uTs78/Ckk/lJcBrf1kGeGZL++CWd3 QXaUw7QXhtdK/QOh6I646zsK8caZgWslUZ5NUrzAog48XC+mZRY/I5ofZJbrPhu7xVa2Vt BbHISsXz8t2TESlGXrmPsRutePgUeehBBy6z210BCU5GU802zti2Tc3H3EhfYJdML3DEpg 6Lql/rnkrVlFx84yT7gStDzXs7gB5+xcv4FfRP5bvi0P9e37UygQS6l6k8NPsttS/v9FGv USZT4/MiaSfu2HEm+wojH/2CZYggZPpnuYoQp5whjVdF/HqznqP7milH2csQow== ARC-Message-Signature: i=1; a=rsa-sha256; c=relaxed/relaxed; d=freebsd.org; s=dkim; t=1736181082; h=from:from:reply-to:subject:subject:date:date:message-id:message-id: to:to:cc:mime-version:mime-version:content-type:content-type: content-transfer-encoding:content-transfer-encoding; bh=NIG2KR32IYcUy5ZUi3XON75DPE6NbWYBA8yv7Nafexw=; b=S8GOvoit3ntwR17CaT65lz67bZl1TTUHDKDImQEN+nhvF3/qMNMcXHvsRPCsHyjwxyOBKm FW6QbwvCb6ZLU6WISHF9oJJUYFp7eZIEMmSshDkVx25gADxoFwi139KdWXVtWzlOntTWKz TEjOTxabVekyF4JY7c/J18GnhOpIdg34YFpz70txERiqs78+CRfidJ1fqYu1MYfiEORf8E jCMwKprfG14YcJqvZiHPvtwk4kLR0YKetHRV+MgCTh7swiyTrp2GHq4xEbOdrAwQxzPwLR Xi+Bp+Gs5/1Ax+LW1mphyov/LJQPCin5hZ01grDr5mZzmMM9Dui2VlfeSer40g== ARC-Seal: i=1; s=dkim; d=freebsd.org; t=1736181082; a=rsa-sha256; cv=none; b=QgdciD8JQHNhHGXytxDvmAjgyR27+ee8f+l8c+heZjXqpjHU43/YJZBA6bfGTgQol+BL+1 MajxE1+9plq6Z5UyC8sPIW5GmsS9i4eA63AMLVrOOIn55QXiF9ALRhzmQfvOPfAUF/7/qn 1spV86Qyw/yLswt5rPlhpRjqT+wFEZFgEq6/aEoU1S/lDq5ARlOuKpLwK0aOp40gIIum7O IHPCZSllybsV5BIksShcCBDtG98zNTGkqVLf/nM26+BpUEucLUDcScA1gphNB+5RbFM4rO GX5J5FFX2MO186S4h0u2Po5kemxPeW3IvcJd8YuFXrhjohfe2V83vul3+33qkw== ARC-Authentication-Results: i=1; mx1.freebsd.org; none Received: from gitrepo.freebsd.org (gitrepo.freebsd.org [IPv6:2610:1c1:1:6068::e6a:5]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) key-exchange X25519 server-signature RSA-PSS (4096 bits) server-digest SHA256) (Client did not present a certificate) by mxrelay.nyi.freebsd.org (Postfix) with ESMTPS id 4YRfnk4nHXzWqJ; Mon, 06 Jan 2025 16:31:22 +0000 (UTC) (envelope-from git@FreeBSD.org) Received: from gitrepo.freebsd.org ([127.0.1.44]) by gitrepo.freebsd.org (8.18.1/8.18.1) with ESMTP id 506GVMY9031323; Mon, 6 Jan 2025 16:31:22 GMT (envelope-from git@gitrepo.freebsd.org) Received: (from git@localhost) by gitrepo.freebsd.org (8.18.1/8.18.1/Submit) id 506GVMaQ031320; Mon, 6 Jan 2025 16:31:22 GMT (envelope-from git) Date: Mon, 6 Jan 2025 16:31:22 GMT Message-Id: <202501061631.506GVMaQ031320@gitrepo.freebsd.org> To: ports-committers@FreeBSD.org, dev-commits-ports-all@FreeBSD.org, dev-commits-ports-main@FreeBSD.org From: Zsolt Udvari Subject: git: b4d1145e6d95 - main - biology/bwa: small improvements List-Id: Commit messages for all branches of the ports repository List-Archive: https://lists.freebsd.org/archives/dev-commits-ports-all List-Help: List-Post: List-Subscribe: List-Unsubscribe: X-BeenThere: dev-commits-ports-all@freebsd.org Sender: owner-dev-commits-ports-all@FreeBSD.org MIME-Version: 1.0 Content-Type: text/plain; charset=utf-8 Content-Transfer-Encoding: 8bit X-Git-Committer: uzsolt X-Git-Repository: ports X-Git-Refname: refs/heads/main X-Git-Reftype: branch X-Git-Commit: b4d1145e6d954e57662b23db4f758ab677fb740a Auto-Submitted: auto-generated The branch main has been updated by uzsolt: URL: https://cgit.FreeBSD.org/ports/commit/?id=b4d1145e6d954e57662b23db4f758ab677fb740a commit b4d1145e6d954e57662b23db4f758ab677fb740a Author: Älven AuthorDate: 2025-01-06 16:29:54 +0000 Commit: Zsolt Udvari CommitDate: 2025-01-06 16:29:54 +0000 biology/bwa: small improvements Add supplementary WWWs. Remove unneeded USES=tar:bzip2. Upstream uses common tar.gz archives. PR: 283873 Approved by: submitter is maintainer --- biology/bwa/Makefile | 6 ++++-- 1 file changed, 4 insertions(+), 2 deletions(-) diff --git a/biology/bwa/Makefile b/biology/bwa/Makefile index 97acc3015c75..13316b89e355 100644 --- a/biology/bwa/Makefile +++ b/biology/bwa/Makefile @@ -5,7 +5,9 @@ CATEGORIES= biology MAINTAINER= alster@vinterdalen.se COMMENT= Burrows-Wheeler sequence aligner -WWW= https://github.com/lh3/bwa/ +WWW= https://bio-bwa.sourceforge.net/ \ + https://sourceforge.net/projects/bio-bwa/ \ + https://github.com/lh3/bwa/ LICENSE= GPLv3 LICENSE_FILE= ${WRKSRC}/COPYING @@ -16,7 +18,7 @@ BROKEN_mips64= fails to compile: cc1: unrecognized command line option "-msse2" BUILD_DEPENDS= simde>0:devel/simde -USES= gmake localbase perl5 shebangfix tar:bzip2 +USES= gmake localbase perl5 shebangfix USE_GITHUB= yes GH_ACCOUNT= lh3 USE_PERL5= run