From owner-freebsd-ports-bugs@FreeBSD.ORG Mon Apr 3 20:10:20 2006 Return-Path: X-Original-To: freebsd-ports-bugs@hub.freebsd.org Delivered-To: freebsd-ports-bugs@hub.freebsd.org Received: from mx1.FreeBSD.org (mx1.freebsd.org [216.136.204.125]) by hub.freebsd.org (Postfix) with ESMTP id C3C6D16A420 for ; Mon, 3 Apr 2006 20:10:20 +0000 (UTC) (envelope-from gnats@FreeBSD.org) Received: from freefall.freebsd.org (freefall.freebsd.org [216.136.204.21]) by mx1.FreeBSD.org (Postfix) with ESMTP id 2E02C43D48 for ; Mon, 3 Apr 2006 20:10:20 +0000 (GMT) (envelope-from gnats@FreeBSD.org) Received: from freefall.freebsd.org (gnats@localhost [127.0.0.1]) by freefall.freebsd.org (8.13.4/8.13.4) with ESMTP id k33KAKjj045944 for ; Mon, 3 Apr 2006 20:10:20 GMT (envelope-from gnats@freefall.freebsd.org) Received: (from gnats@localhost) by freefall.freebsd.org (8.13.4/8.13.4/Submit) id k33KAJMe045943; Mon, 3 Apr 2006 20:10:19 GMT (envelope-from gnats) Resent-Date: Mon, 3 Apr 2006 20:10:19 GMT Resent-Message-Id: <200604032010.k33KAJMe045943@freefall.freebsd.org> Resent-From: FreeBSD-gnats-submit@FreeBSD.org (GNATS Filer) Resent-To: freebsd-ports-bugs@FreeBSD.org Resent-Reply-To: FreeBSD-gnats-submit@FreeBSD.org, Fernan Aguero Received: from mx1.FreeBSD.org (mx1.freebsd.org [216.136.204.125]) by hub.freebsd.org (Postfix) with ESMTP id E7FC416A401 for ; Mon, 3 Apr 2006 20:08:09 +0000 (UTC) (envelope-from fernan@omega.iib.unsam.edu.ar) Received: from smtp.unsam.edu.ar (smtp.unsam.edu.ar [170.210.48.3]) by mx1.FreeBSD.org (Postfix) with ESMTP id 381A343D48 for ; Mon, 3 Apr 2006 20:08:04 +0000 (GMT) (envelope-from fernan@omega.iib.unsam.edu.ar) Received: from omega.iib.unsam.edu.ar (omega.iib.unsam.edu.ar [192.168.10.14]) by smtp.unsam.edu.ar (8.12.6/8.12.6) with ESMTP id k33Ju4Ur039130 for ; Mon, 3 Apr 2006 16:56:05 -0300 (ART) (envelope-from fernan@omega.iib.unsam.edu.ar) Received: from omega.iib.unsam.edu.ar (localhost [127.0.0.1]) by omega.iib.unsam.edu.ar (8.13.4/8.13.4) with ESMTP id k33K7vAu049106 for ; Mon, 3 Apr 2006 17:07:57 -0300 (ART) (envelope-from fernan@omega.iib.unsam.edu.ar) Received: (from fernan@localhost) by omega.iib.unsam.edu.ar (8.13.4/8.13.3/Submit) id k33K7lLm049065; Mon, 3 Apr 2006 17:07:47 -0300 (ART) (envelope-from fernan) Message-Id: <200604032007.k33K7lLm049065@omega.iib.unsam.edu.ar> Date: Mon, 3 Apr 2006 17:07:47 -0300 (ART) From: Fernan Aguero To: FreeBSD-gnats-submit@FreeBSD.org X-Send-Pr-Version: 3.113 Cc: Subject: ports/95281: [ maintainer-update ] update biology/seaview X-BeenThere: freebsd-ports-bugs@freebsd.org X-Mailman-Version: 2.1.5 Precedence: list Reply-To: Fernan Aguero List-Id: Ports bug reports List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , X-List-Received-Date: Mon, 03 Apr 2006 20:10:20 -0000 >Number: 95281 >Category: ports >Synopsis: [ maintainer-update ] update biology/seaview >Confidential: no >Severity: non-critical >Priority: low >Responsible: freebsd-ports-bugs >State: open >Quarter: >Keywords: >Date-Required: >Class: maintainer-update >Submitter-Id: current-users >Arrival-Date: Mon Apr 03 20:10:15 GMT 2006 >Closed-Date: >Last-Modified: >Originator: Fernan Aguero >Release: FreeBSD 6.0-RELEASE-p4 i386 >Organization: IIB-UNSAM >Environment: System: FreeBSD omega.iib.unsam.edu.ar 6.0-RELEASE-p4 FreeBSD 6.0-RELEASE-p4 #0: Wed Jan 25 12:43:39 ART 2006 fernan@omega.iib.unsam.edu.ar:/usr/obj/usr/src/sys/OMEGA i386 >Description: Update seaview to latest version >How-To-Repeat: >Fix: --- seaview.diff begins here --- diff -ruN /usr/ports/biology/seaview/Makefile seaview/Makefile --- /usr/ports/biology/seaview/Makefile Wed Mar 1 20:11:43 2006 +++ seaview/Makefile Mon Apr 3 16:15:27 2006 @@ -7,7 +7,7 @@ # PORTNAME= seaview -PORTVERSION= 2006.01.25 +PORTVERSION= 2006.02.13 CATEGORIES= biology MASTER_SITES= ftp://pbil.univ-lyon1.fr/pub/mol_phylogeny/seaview/archive/ DISTNAME= ${PORTNAME}${PORTVERSION:S/.//g} diff -ruN /usr/ports/biology/seaview/distinfo seaview/distinfo --- /usr/ports/biology/seaview/distinfo Wed Mar 1 20:11:43 2006 +++ seaview/distinfo Mon Apr 3 16:16:42 2006 @@ -1,3 +1,3 @@ -MD5 (seaview20060125.tar) = c6b9b014fa26a7d53f8f40d370cbf4ef -SHA256 (seaview20060125.tar) = 5d4eed74d60b2dec3d41a50dfccd648cf24a7e2b0466d57c840346aa2c24aff2 -SIZE (seaview20060125.tar) = 600576 +MD5 (seaview20060213.tar) = 0322689575b6eeede73010a493f23f9f +SHA256 (seaview20060213.tar) = 3b6cd132a8c9c2d29881e3bcb14a85b9a52524a5974317a9df09d9e15ffc7776 +SIZE (seaview20060213.tar) = 573952 diff -ruN /usr/ports/biology/seaview/files/patch-Makefile seaview/files/patch-Makefile --- /usr/ports/biology/seaview/files/patch-Makefile Sat Dec 10 11:04:33 2005 +++ seaview/files/patch-Makefile Mon Apr 3 16:36:10 2006 @@ -1,5 +1,5 @@ ---- Makefile.orig Wed Apr 6 05:54:30 2005 -+++ Makefile Fri Dec 9 07:41:26 2005 +--- Makefile.orig Mon Apr 3 16:30:03 2006 ++++ Makefile Mon Apr 3 16:35:59 2006 @@ -1,18 +1,15 @@ -FLTK = ../fltk -PDF = ../PDFlib-Lite-6.0.1/libs/pdflib @@ -7,10 +7,10 @@ CXX = g++ -CFLAGS = -Dunix -U__APPLE__ -c $(OPT) -I$(FLTK) -I$(PDF) -I$(X11)/include -+CFLAGS+= -Dunix -c $(OPT) -I$(X11BASE)/include -I$(LOCALBASE)/include ++CFLAGS+= -Dunix -U__APPLE__ -c $(OPT) -I$(X11BASE)/include -I$(LOCALBASE)/include - OBJECTS = seaview.o pdf.o custom.o use_mase_files.o regions.o load_seq.o align.o xfmatpt.o comlines.o chooser_plus.o resource.o nexus.o old_file_chooser.o + OBJECTS = seaview.o pdf.o custom.o use_mase_files.o regions.o load_seq.o align.o xfmatpt.o comlines.o chooser_plus.o resource.o nexus.o seaview : $(OBJECTS) --- seaview.diff ends here --- >Release-Note: >Audit-Trail: >Unformatted: