From owner-svn-ports-head@freebsd.org Sun May 3 02:08:21 2020 Return-Path: Delivered-To: svn-ports-head@mailman.nyi.freebsd.org Received: from mx1.freebsd.org (mx1.freebsd.org [IPv6:2610:1c1:1:606c::19:1]) by mailman.nyi.freebsd.org (Postfix) with ESMTP id 120D92CECB5; Sun, 3 May 2020 02:08:21 +0000 (UTC) (envelope-from jrm@FreeBSD.org) Received: from mxrelay.nyi.freebsd.org (mxrelay.nyi.freebsd.org [IPv6:2610:1c1:1:606c::19:3]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) server-signature RSA-PSS (4096 bits) client-signature RSA-PSS (4096 bits) client-digest SHA256) (Client CN "mxrelay.nyi.freebsd.org", Issuer "Let's Encrypt Authority X3" (verified OK)) by mx1.freebsd.org (Postfix) with ESMTPS id 49F8Xh6kv7z42v0; Sun, 3 May 2020 02:08:20 +0000 (UTC) (envelope-from jrm@FreeBSD.org) Received: from repo.freebsd.org (repo.freebsd.org [IPv6:2610:1c1:1:6068::e6a:0]) (using TLSv1.2 with cipher ECDHE-RSA-AES256-GCM-SHA384 (256/256 bits)) (Client did not present a certificate) by mxrelay.nyi.freebsd.org (Postfix) with ESMTPS id C90CA3817; Sun, 3 May 2020 02:08:20 +0000 (UTC) (envelope-from jrm@FreeBSD.org) Received: from repo.freebsd.org ([127.0.1.37]) by repo.freebsd.org (8.15.2/8.15.2) with ESMTP id 04328KIh066995; Sun, 3 May 2020 02:08:20 GMT (envelope-from jrm@FreeBSD.org) Received: (from jrm@localhost) by repo.freebsd.org (8.15.2/8.15.2/Submit) id 04328K6C066991; Sun, 3 May 2020 02:08:20 GMT (envelope-from jrm@FreeBSD.org) Message-Id: <202005030208.04328K6C066991@repo.freebsd.org> X-Authentication-Warning: repo.freebsd.org: jrm set sender to jrm@FreeBSD.org using -f From: Joseph Mingrone Date: Sun, 3 May 2020 02:08:20 +0000 (UTC) To: ports-committers@freebsd.org, svn-ports-all@freebsd.org, svn-ports-head@freebsd.org Subject: svn commit: r533731 - head/biology/hyphy X-SVN-Group: ports-head X-SVN-Commit-Author: jrm X-SVN-Commit-Paths: head/biology/hyphy X-SVN-Commit-Revision: 533731 X-SVN-Commit-Repository: ports MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit X-BeenThere: svn-ports-head@freebsd.org X-Mailman-Version: 2.1.29 Precedence: list List-Id: SVN commit messages for the ports tree for head List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , X-List-Received-Date: Sun, 03 May 2020 02:08:21 -0000 Author: jrm Date: Sun May 3 02:08:19 2020 New Revision: 533731 URL: https://svnweb.freebsd.org/changeset/ports/533731 Log: biology/hyphy: Update to version 2.5.12 Upstream changes: https://github.com/veg/hyphy/releases/tag/2.5.11 https://github.com/veg/hyphy/releases/tag/2.5.12 Modified: head/biology/hyphy/Makefile (contents, props changed) head/biology/hyphy/distinfo (contents, props changed) head/biology/hyphy/pkg-plist (contents, props changed) Modified: head/biology/hyphy/Makefile ============================================================================== --- head/biology/hyphy/Makefile Sun May 3 01:43:11 2020 (r533730) +++ head/biology/hyphy/Makefile Sun May 3 02:08:19 2020 (r533731) @@ -1,7 +1,7 @@ # $FreeBSD$ PORTNAME= hyphy -DISTVERSION= 2.5.10 +DISTVERSION= 2.5.12 CATEGORIES= biology MAINTAINER= jrm@FreeBSD.org Modified: head/biology/hyphy/distinfo ============================================================================== --- head/biology/hyphy/distinfo Sun May 3 01:43:11 2020 (r533730) +++ head/biology/hyphy/distinfo Sun May 3 02:08:19 2020 (r533731) @@ -1,3 +1,3 @@ -TIMESTAMP = 1587774446 -SHA256 (veg-hyphy-2.5.10_GH0.tar.gz) = 73e5bfa6a00dfcbe4cc7fd193d2eaa7273b6de62546992dfa19673a969e464fe -SIZE (veg-hyphy-2.5.10_GH0.tar.gz) = 6104280 +TIMESTAMP = 1588470249 +SHA256 (veg-hyphy-2.5.12_GH0.tar.gz) = ed3659371806efb6542d53ed149758a005884428fc94a27b51f897381368853f +SIZE (veg-hyphy-2.5.12_GH0.tar.gz) = 6099625 Modified: head/biology/hyphy/pkg-plist ============================================================================== --- head/biology/hyphy/pkg-plist Sun May 3 01:43:11 2020 (r533730) +++ head/biology/hyphy/pkg-plist Sun May 3 02:08:19 2020 (r533731) @@ -176,7 +176,6 @@ lib/hyphy/TemplateBatchFiles/SandNSAmbigs.bf lib/hyphy/TemplateBatchFiles/SelectionAnalyses/BUSTED.bf lib/hyphy/TemplateBatchFiles/SelectionAnalyses/BranchSiteREL.bf lib/hyphy/TemplateBatchFiles/SelectionAnalyses/FADE.bf -lib/hyphy/TemplateBatchFiles/SelectionAnalyses/FEL-contrast.bf lib/hyphy/TemplateBatchFiles/SelectionAnalyses/FEL.bf lib/hyphy/TemplateBatchFiles/SelectionAnalyses/FUBAR.bf lib/hyphy/TemplateBatchFiles/SelectionAnalyses/MEME.bf @@ -187,6 +186,7 @@ lib/hyphy/TemplateBatchFiles/SelectionAnalyses/RELAX.b lib/hyphy/TemplateBatchFiles/SelectionAnalyses/SLAC.bf lib/hyphy/TemplateBatchFiles/SelectionAnalyses/SingleOmega.bf lib/hyphy/TemplateBatchFiles/SelectionAnalyses/aBSREL.bf +lib/hyphy/TemplateBatchFiles/SelectionAnalyses/contrast-fel.bf lib/hyphy/TemplateBatchFiles/SelectionAnalyses/modules/grid_compute.ibf lib/hyphy/TemplateBatchFiles/SelectionAnalyses/modules/io_functions.ibf lib/hyphy/TemplateBatchFiles/SelectionAnalyses/modules/selection_lib.ibf