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Date:      Sun, 10 Feb 2019 21:29:40 GMT
From:      pkg-fallout@FreeBSD.org
To:        pkg-fallout@FreeBSD.org
Subject:   [package - head-armv6-default][science/py-molmod] Failed for py27-molmod-1.4.4_1 in configure
Message-ID:  <201902102129.x1ALTecb060645@beefy8.nyi.freebsd.org>

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You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.

Maintainer:     yuri@FreeBSD.org
Last committer: gerald@FreeBSD.org
Ident:          $FreeBSD: head/science/py-molmod/Makefile 487272 2018-12-12 01:35:33Z gerald $
Log URL:        http://beefy8.nyi.freebsd.org/data/head-armv6-default/p492341_s343845/logs/py27-molmod-1.4.4_1.log
Build URL:      http://beefy8.nyi.freebsd.org/build.html?mastername=head-armv6-default&build=p492341_s343845
Log:

=>> Building science/py-molmod
build started at Sun Feb 10 21:28:50 UTC 2019
port directory: /usr/ports/science/py-molmod
package name: py27-molmod-1.4.4_1
building for: FreeBSD head-armv6-default-job-05 13.0-CURRENT FreeBSD 13.0-CURRENT 1300010 arm
maintained by: yuri@FreeBSD.org
Makefile ident:      $FreeBSD: head/science/py-molmod/Makefile 487272 2018-12-12 01:35:33Z gerald $
Poudriere version: 3.2.8
Host OSVERSION: 1300009
Jail OSVERSION: 1300010
Job Id: 05




!!! Jail is newer than host. (Jail: 1300010, Host: 1300009) !!!
!!! This is not supported. !!!
!!! Host kernel must be same or newer than jail. !!!
!!! Expect build failures. !!!



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DEPENDS_ARGS=
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---Begin OPTIONS List---
---End OPTIONS List---

--MAINTAINER--
yuri@FreeBSD.org
--End MAINTAINER--

--CONFIGURE_ARGS--

--End CONFIGURE_ARGS--

--CONFIGURE_ENV--
PYTHON="/usr/local/bin/python2.7" XDG_DATA_HOME=/wrkdirs/usr/ports/science/py-molmod/work-py27  XDG_CONFIG_HOME=/wrkdirs/usr/ports/science/py-molmod/work-py27  HOME=/wrkdirs/usr/ports/science/py-molmod/work-py27 TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/science/py-molmod/work-py27/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin SHELL=/bin/sh CONFIG_SHELL=/bin/sh
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=======================<phase: check-sanity   >============================
===>  License GPLv3+ accepted by the user
===========================================================================
=======================<phase: pkg-depends    >============================
===>   py27-molmod-1.4.4_1 depends on file: /usr/local/sbin/pkg - not found
===>   Installing existing package /packages/All/pkg-1.10.5_5.txz
[head-armv6-default-job-05] Installing pkg-1.10.5_5...
[head-armv6-default-job-05] Extracting pkg-1.10.5_5: .......... done
===>   py27-molmod-1.4.4_1 depends on file: /usr/local/sbin/pkg - found
===>   Returning to build of py27-molmod-1.4.4_1
===========================================================================
=======================<phase: fetch-depends  >============================
===========================================================================
=======================<phase: fetch          >============================
===>  License GPLv3+ accepted by the user
===> Fetching all distfiles required by py27-molmod-1.4.4_1 for building
===========================================================================
=======================<phase: checksum       >============================
===>  License GPLv3+ accepted by the user
===> Fetching all distfiles required by py27-molmod-1.4.4_1 for building
=> SHA256 Checksum OK for molmod-1.4.4.tar.gz.
===========================================================================
=======================<phase: extract-depends>============================
===========================================================================
=======================<phase: extract        >============================
===>  License GPLv3+ accepted by the user
===> Fetching all distfiles required by py27-molmod-1.4.4_1 for building
===>  Extracting for py27-molmod-1.4.4_1
=> SHA256 Checksum OK for molmod-1.4.4.tar.gz.
===========================================================================
=======================<phase: patch-depends  >============================
===========================================================================
=======================<phase: patch          >============================
===>  Patching for py27-molmod-1.4.4_1
===========================================================================
=======================<phase: build-depends  >============================
===>   py27-molmod-1.4.4_1 depends on package: py27-numpy>0 - not found
===>   Installing existing package /packages/All/py27-numpy-1.15.4_1,1.txz
[head-armv6-default-job-05] Installing py27-numpy-1.15.4_1,1...
[head-armv6-default-job-05] `-- Installing blas-3.5.0_5...
[head-armv6-default-job-05] |   `-- Installing gcc8-8.2.0_4...
[head-armv6-default-job-05] |   | `-- Installing binutils-2.31.1_2,1...
[head-armv6-default-job-05] |   |   `-- Installing gettext-runtime-0.19.8.1_2...
[head-armv6-default-job-05] |   |   | `-- Installing indexinfo-0.3.1...
[head-armv6-default-job-05] |   |   | `-- Extracting indexinfo-0.3.1: .... done
[head-armv6-default-job-05] |   |   `-- Extracting gettext-runtime-0.19.8.1_2: .......... done
[head-armv6-default-job-05] |   | `-- Extracting binutils-2.31.1_2,1: .......... done
[head-armv6-default-job-05] |   | `-- Installing gmp-6.1.2_1...
[head-armv6-default-job-05] |   | `-- Extracting gmp-6.1.2_1: .......... done
[head-armv6-default-job-05] |   | `-- Installing mpc-1.1.0_2...
[head-armv6-default-job-05] |   |   `-- Installing mpfr-4.0.1_2...
[head-armv6-default-job-05] |   |   `-- Extracting mpfr-4.0.1_2: .......... done
[head-armv6-default-job-05] |   | `-- Extracting mpc-1.1.0_2: ......... done
[head-armv6-default-job-05] |   `-- Extracting gcc8-8.2.0_4: .......... done
[head-armv6-default-job-05] `-- Extracting blas-3.5.0_5: ....... done
[head-armv6-default-job-05] `-- Installing cblas-1.0_10...
[head-armv6-default-job-05] `-- Extracting cblas-1.0_10: ......... done
[head-armv6-default-job-05] `-- Installing lapack-3.5.0_6...
[head-armv6-default-job-05] `-- Extracting lapack-3.5.0_6: .......... done
[head-armv6-default-job-05] `-- Installing py27-setuptools-40.6.3...
[head-armv6-default-job-05] |   `-- Installing python27-2.7.15...
[head-armv6-default-job-05] |   | `-- Installing libffi-3.2.1_3...
[head-armv6-default-job-05] |   | `-- Extracting libffi-3.2.1_3: .......... done
[head-armv6-default-job-05] |   | `-- Installing readline-7.0.5...
[head-armv6-default-job-05] |   | `-- Extracting readline-7.0.5: .......... done
[head-armv6-default-job-05] |   `-- Extracting python27-2.7.15: .......... done
[head-armv6-default-job-05] `-- Extracting py27-setuptools-40.6.3: .......... done
[head-armv6-default-job-05] `-- Installing suitesparse-5.2.0_2...
[head-armv6-default-job-05] |   `-- Installing metis-5.1.0_7...
[head-armv6-default-job-05] |   `-- Extracting metis-5.1.0_7: .......... done
[head-armv6-default-job-05] |   `-- Installing openblas-0.2.20_7,1...
[head-armv6-default-job-05] |   `-- Extracting openblas-0.2.20_7,1: ......... done
[head-armv6-default-job-05] `-- Extracting suitesparse-5.2.0_2: .......... done
[head-armv6-default-job-05] Extracting py27-numpy-1.15.4_1,1: .......... done
Message from gcc8-8.2.0_4:

To ensure binaries built with this toolchain find appropriate versions
of the necessary run-time libraries, you may want to link using

  -Wl,-rpath=/usr/local/lib/gcc8

For ports leveraging USE_GCC, USES=compiler, or USES=fortran this happens
transparently.
Message from cblas-1.0_10:

===>   NOTICE:

The cblas port currently does not have a maintainer. As a result, it is
more likely to have unresolved issues, not be up-to-date, or even be removed in
the future. To volunteer to maintain this port, please create an issue at:

https://bugs.freebsd.org/bugzilla

More information about port maintainership is available at:

https://www.freebsd.org/doc/en/articles/contributing/ports-contributing.html#maintain-port
Message from python27-2.7.15:

===========================================================================

Note that some standard Python modules are provided as separate ports
as they require additional dependencies. They are available as:

bsddb           databases/py-bsddb
gdbm            databases/py-gdbm
sqlite3         databases/py-sqlite3
tkinter         x11-toolkits/py-tkinter

===========================================================================
Message from metis-5.1.0_7:

===>   NOTICE:

The metis port currently does not have a maintainer. As a result, it is
more likely to have unresolved issues, not be up-to-date, or even be removed in
the future. To volunteer to maintain this port, please create an issue at:

https://bugs.freebsd.org/bugzilla

More information about port maintainership is available at:

https://www.freebsd.org/doc/en/articles/contributing/ports-contributing.html#maintain-port
===>   py27-molmod-1.4.4_1 depends on package: py27-numpy>0 - found
===>   Returning to build of py27-molmod-1.4.4_1
===>   py27-molmod-1.4.4_1 depends on executable: cython-2.7 - not found
===>   Installing existing package /packages/All/py27-cython-0.29.txz
[head-armv6-default-job-05] Installing py27-cython-0.29...
[head-armv6-default-job-05] Extracting py27-cython-0.29: .......... done
===>   py27-molmod-1.4.4_1 depends on executable: cython-2.7 - found
===>   Returning to build of py27-molmod-1.4.4_1
===>   py27-molmod-1.4.4_1 depends on package: py27-setuptools>0 - found
===>   py27-molmod-1.4.4_1 depends on file: /usr/local/bin/python2.7 - found
===========================================================================
=======================<phase: lib-depends    >============================
===========================================================================
=======================<phase: configure      >============================
===>  Configuring for py27-molmod-1.4.4_1
Traceback (most recent call last):
  File "<string>", line 1, in <module>
  File "setup.py", line 32, in <module>
    import numpy as np
  File "/usr/local/lib/python2.7/site-packages/numpy/__init__.py", line 142, in <module>
    from . import add_newdocs
  File "/usr/local/lib/python2.7/site-packages/numpy/add_newdocs.py", line 13, in <module>
    from numpy.lib import add_newdoc
  File "/usr/local/lib/python2.7/site-packages/numpy/lib/__init__.py", line 8, in <module>
    from .type_check import *
  File "/usr/local/lib/python2.7/site-packages/numpy/lib/type_check.py", line 11, in <module>
    import numpy.core.numeric as _nx
  File "/usr/local/lib/python2.7/site-packages/numpy/core/__init__.py", line 26, in <module>
    raise ImportError(msg)
ImportError: 
Importing the multiarray numpy extension module failed.  Most
likely you are trying to import a failed build of numpy.
If you're working with a numpy git repo, try `git clean -xdf` (removes all
files not under version control).  Otherwise reinstall numpy.

Original error was: /usr/local/lib/libblas.so.2: Undefined symbol "__aeabi_uidiv@GCC_3.5"

*** Error code 1

Stop.
make: stopped in /usr/ports/science/py-molmod



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