Date: Thu, 9 Jan 2020 09:40:31 GMT From: pkg-fallout@FreeBSD.org To: pkg-fallout@FreeBSD.org Subject: [package - 120armv6-quarterly][science/avogadrolibs] Failed for avogadrolibs-1.92.1_1 in build Message-ID: <202001090940.0099eVsh024682@beefy15.nyi.freebsd.org>
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You are receiving this mail as a port that you maintain is failing to build on the FreeBSD package build server. Please investigate the failure and submit a PR to fix build. Maintainer: yuri@FreeBSD.org Last committer: gerald@FreeBSD.org Ident: $FreeBSD: branches/2020Q1/science/avogadrolibs/Makefile 507372 2019-07-26 20:46:53Z gerald $ Log URL: http://beefy15.nyi.freebsd.org/data/120armv6-quarterly/521967/logs/avogadrolibs-1.92.1_1.log Build URL: http://beefy15.nyi.freebsd.org/build.html?mastername=120armv6-quarterly&build=521967 Log: =>> Building science/avogadrolibs build started at Thu Jan 9 09:32:32 UTC 2020 port directory: /usr/ports/science/avogadrolibs package name: avogadrolibs-1.92.1_1 building for: FreeBSD 120armv6-quarterly-job-11 12.0-RELEASE-p12 FreeBSD 12.0-RELEASE-p12 1200086 arm maintained by: yuri@FreeBSD.org Makefile ident: $FreeBSD: branches/2020Q1/science/avogadrolibs/Makefile 507372 2019-07-26 20:46:53Z gerald $ Poudriere version: 3.2.8-5-gc81843e5 Host OSVERSION: 1300062 Jail OSVERSION: 1200086 Job Id: 11 ---Begin Environment--- SHELL=/bin/csh UNAME_p=armv6 UNAME_m=arm ABI_FILE=/usr/lib/crt1.o OSVERSION=1200086 UNAME_v=FreeBSD 12.0-RELEASE-p12 1200086 UNAME_r=12.0-RELEASE-p12 BLOCKSIZE=K MAIL=/var/mail/root STATUS=1 HOME=/root PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin LOCALBASE=/usr/local QEMU_EMULATING=1 USER=root LIBEXECPREFIX=/usr/local/libexec/poudriere POUDRIERE_VERSION=3.2.8-5-gc81843e5 MASTERMNT=/usr/local/poudriere/data/.m/120armv6-quarterly/ref POUDRIERE_BUILD_TYPE=bulk PACKAGE_BUILDING=yes SAVED_TERM= PWD=/usr/local/poudriere/data/.m/120armv6-quarterly/ref/.p/pool P_PORTS_FEATURES=FLAVORS SELECTED_OPTIONS MASTERNAME=120armv6-quarterly SCRIPTPREFIX=/usr/local/share/poudriere OLDPWD=/usr/local/poudriere/data/.m/120armv6-quarterly/ref/.p SCRIPTPATH=/usr/local/share/poudriere/bulk.sh POUDRIEREPATH=/usr/local/bin/poudriere ---End Environment--- ---Begin Poudriere Port Flags/Env--- PORT_FLAGS= PKGENV= FLAVOR= DEPENDS_ARGS= MAKE_ARGS= ---End Poudriere Port Flags/Env--- ---Begin OPTIONS List--- ===> The following configuration options are available for avogadrolibs-1.92.1_1: HDF5=off: HDF-5 data format support LIBARCHIVE=on: Enable optional Libarchive features LIBMSYM=on: Enable optional features using libmsym MOLEQUEUE=on: Enable the MoleQueue dependent functionality OPENGL=on: 2D/3D rendering support via OpenGL QT5=on: Qt 5 toolkit support SPGLIB=on: Enable optional features using spglib VTK=off: Enable libraries that use VTK ===> Use 'make config' to modify these settings ---End OPTIONS List--- --MAINTAINER-- yuri@FreeBSD.org --End MAINTAINER-- --CONFIGURE_ARGS-- --End CONFIGURE_ARGS-- --CONFIGURE_ENV-- QT_SELECT=qt5 QMAKEMODULES="/wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.92.1/mkspecs/modules:/usr/local/lib/qt5/mkspecs/modules" XDG_DATA_HOME=/wrkdirs/usr/ports/science/avogadrolibs/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/science/avogadrolibs/work HOME=/wrkdirs/usr/ports/science/avogadrolibs/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/science/avogadrolibs/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin SHELL=/bin/sh CONFIG_SHELL=/bin/sh CMAKE_PREFIX_PATH="/usr/local" --End CONFIGURE_ENV-- --MAKE_ENV-- QT_SELECT=qt5 QMAKEMODULES="/wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.92.1/mkspecs/modules:/usr/local/lib/qt5/mkspecs/modules" XDG_DATA_HOME=/wrkdirs/usr/ports/science/avogadrolibs/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/science/avogadrolibs/work HOME=/wrkdirs/usr/ports/science/avogadrolibs/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/science/avogadrolibs/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin NO_PIE=yes MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES DESTDIR=/wrkdirs/usr/ports/science/avogadrolibs/work/stage PREFIX=/usr/local LOCALBASE=/usr/local CC="/nxb-bin/usr/bin/cc" CFLAGS="-O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing " 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QT_DATADIR="share/qt5" QT_DOCDIR="share/doc/qt5" QT_L10NDIR="share/qt5/translations" QT_EXAMPLEDIR="share/examples/qt5" QT_TESTDIR="share/qt5/tests" QT_MKSPECDIR="lib/qt5/mkspecs" QT_QTCHOOSERDIR="etc/xdg/qtchooser" OSREL=12.0 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib DOCSDIR="share/doc/avogadrolibs" EXAMPLESDIR="share/examples/avogadrolibs" DATADIR="share/avogadrolibs" WWWDIR="www/avogadrolibs" ETCDIR="etc/avogadrolibs" --End PLIST_SUB-- --SUB_LIST-- HDF5="@comment " NO_HDF5="" LIBARCHIVE="" NO_LIBARCHIVE="@comment " LIBMSYM="" NO_LIBMSYM="@comment " MOLEQUEUE="" NO_MOLEQUEUE="@comment " OPENGL="" NO_OPENGL="@comment " QT5="" NO_QT5="@comment " SPGLIB="" NO_SPGLIB="@comment " VTK="@comment " NO_VTK="" PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/avogadrolibs DOCSDIR=/usr/local/share/doc/avogadrolibs EXAMPLESDIR=/usr/local/share/examples/avogadrolibs WWWDIR=/usr/local/www/avogadrolibs ETCDIR=/usr/local/etc/avogadrolibs --End SUB_LIST-- ---Begin make.conf--- .sinclude "/etc/make.nxb.conf" USE_PACKAGE_DEPENDS=yes BATCH=yes WRKDIRPREFIX=/wrkdirs PORTSDIR=/usr/ports PACKAGES=/packages DISTDIR=/distfiles PACKAGE_BUILDING=yes PACKAGE_BUILDING_FLAVORS=yes MACHINE=arm MACHINE_ARCH=armv6 ARCH=${MACHINE_ARCH} #### /usr/local/etc/poudriere.d/make.conf #### # XXX: We really need this but cannot use it while 'make checksum' does not # try the next mirror on checksum failure. 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[120armv6-quarterly-job-11] Extracting pkg-1.12.0: .......... done ===> avogadrolibs-1.92.1_1 depends on file: /usr/local/sbin/pkg - found ===> Returning to build of avogadrolibs-1.92.1_1 =========================================================================== =======================<phase: fetch-depends >============================ =========================================================================== =======================<phase: fetch >============================ ===> License GPLv2 accepted by the user ===> Fetching all distfiles required by avogadrolibs-1.92.1_1 for building =========================================================================== =======================<phase: checksum >============================ ===> License GPLv2 accepted by the user ===> Fetching all distfiles required by avogadrolibs-1.92.1_1 for building => SHA256 Checksum OK for OpenChemistry-avogadrolibs-1.92.1_GH0.tar.gz. <snip> [219/458] /nxb-bin/usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -Iavogadro/qtplugins/plugindownloader/PluginDownloader_autogen/include -I. -I/wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.92.1 -Iavogadro/core -Iavogadro/io -Iavogadro/quantumio -Iavogadro/rendering -Iavogadro/qtgui -Iavogadro/qtopengl -Iavogadro/molequeue -Iavogadro/qtplugins/plugindownloader -isystem /usr/local/include/eigen3 -isystem /usr/local/include/qt5 -isystem /usr/local/include/qt5/QtWidgets -isystem /usr/local/include/qt5/QtGui -isystem /usr/local/include/qt5/QtCore -isystem /usr/local/lib/qt5/mkspecs/freebsd-clang -isystem /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.92.1/thirdparty -isystem /usr/local/include/qt5/QtNetwork -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -i system /usr/local/include -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -std=c++11 -MD -MT avogadro/qtplugins/plugindownloader/CMakeFiles/PluginDownloader.dir/PluginDownloaderPlugin.cpp.o -MF avogadro/qtplugins/plugindownloader/CMakeFiles/PluginDownloader.dir/PluginDownloaderPlugin.cpp.o.d -o avogadro/qtplugins/plugindownloader/CMakeFiles/PluginDownloader.dir/PluginDownloaderPlugin.cpp.o -c avogadro/qtplugins/plugindownloader/PluginDownloaderPlugin.cpp [220/458] : && /usr/local/bin/cmake -E remove lib/avogadro2/staticplugins/PluginDownloader.a && /nxb-bin/usr/bin/ar qc lib/avogadro2/staticplugins/PluginDownloader.a avogadro/qtplugins/plugindownloader/CMakeFiles/PluginDownloader.dir/PluginDownloader_autogen/mocs_compilation.cpp.o avogadro/qtplugins/plugindownloader/CMakeFiles/PluginDownloader.dir/plugindownloader.cpp.o avogadro/qtplugins/plugindownloader/CMakeFiles/PluginDownloader.dir/downloaderwidget.cpp.o avogadro/qtplugins/plugindownloader/CMakeFiles/PluginDownloader.dir/zipextracter.cpp.o avogadro/qtplugins/plugindownloader/CMakeFiles/PluginDownloader.dir/PluginDownloaderPlugin.cpp.o && /nxb-bin/usr/bin/ranlib lib/avogadro2/staticplugins/PluginDownloader.a && : [221/458] cd /wrkdirs/usr/ports/science/avogadrolibs/work/.build/avogadro/qtplugins/3dmol && /usr/local/bin/cmake -E cmake_autogen /wrkdirs/usr/ports/science/avogadrolibs/work/.build/avogadro/qtplugins/3dmol/CMakeFiles/ThreeDMol_autogen.dir/AutogenInfo.cmake Release [222/458] cd /wrkdirs/usr/ports/science/avogadrolibs/work/.build/avogadro/qtplugins/3dmol && /usr/local/lib/qt5/bin/uic -o /wrkdirs/usr/ports/science/avogadrolibs/work/.build/avogadro/qtplugins/3dmol/ui_3dmoldialog.h /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.92.1/avogadro/qtplugins/3dmol/3dmoldialog.ui [223/458] /nxb-bin/usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -Iavogadro/qtplugins/3dmol/ThreeDMol_autogen/include -I. -I/wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.92.1 -Iavogadro/core -Iavogadro/io -Iavogadro/quantumio -Iavogadro/rendering -Iavogadro/qtgui -Iavogadro/qtopengl -Iavogadro/molequeue -Iavogadro/qtplugins/3dmol -isystem /usr/local/include/eigen3 -isystem /usr/local/include/qt5 -isystem /usr/local/include/qt5/QtWidgets -isystem /usr/local/include/qt5/QtGui -isystem /usr/local/include/qt5/QtCore -isystem /usr/local/lib/qt5/mkspecs/freebsd-clang -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -std=c++11 -MD -MT avogadro/qtplugins/3dmol/CMakeFiles/ThreeDMol.dir/ThreeDMol_autoge n/mocs_compilation.cpp.o -MF avogadro/qtplugins/3dmol/CMakeFiles/ThreeDMol.dir/ThreeDMol_autogen/mocs_compilation.cpp.o.d -o avogadro/qtplugins/3dmol/CMakeFiles/ThreeDMol.dir/ThreeDMol_autogen/mocs_compilation.cpp.o -c avogadro/qtplugins/3dmol/ThreeDMol_autogen/mocs_compilation.cpp [224/458] /nxb-bin/usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -Iavogadro/qtplugins/3dmol/ThreeDMol_autogen/include -I. -I/wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.92.1 -Iavogadro/core -Iavogadro/io -Iavogadro/quantumio -Iavogadro/rendering -Iavogadro/qtgui -Iavogadro/qtopengl -Iavogadro/molequeue -Iavogadro/qtplugins/3dmol -isystem /usr/local/include/eigen3 -isystem /usr/local/include/qt5 -isystem /usr/local/include/qt5/QtWidgets -isystem /usr/local/include/qt5/QtGui -isystem /usr/local/include/qt5/QtCore -isystem /usr/local/lib/qt5/mkspecs/freebsd-clang -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -std=c++11 -MD -MT avogadro/qtplugins/3dmol/CMakeFiles/ThreeDMol.dir/3dmol.cpp.o -MF avogadro/qtplugins/3dmol/CMakeFiles/ThreeDMol.dir/3dmol.cpp.o.d -o avogadro/qtplugins/3dmol/CMakeFiles/ThreeDMol.dir/3dmol.cpp.o -c /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.92.1/avogadro/qtplugins/3dmol/3dmol.cpp [225/458] /nxb-bin/usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -Iavogadro/qtplugins/3dmol/ThreeDMol_autogen/include -I. -I/wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.92.1 -Iavogadro/core -Iavogadro/io -Iavogadro/quantumio -Iavogadro/rendering -Iavogadro/qtgui -Iavogadro/qtopengl -Iavogadro/molequeue -Iavogadro/qtplugins/3dmol -isystem /usr/local/include/eigen3 -isystem /usr/local/include/qt5 -isystem /usr/local/include/qt5/QtWidgets -isystem /usr/local/include/qt5/QtGui -isystem /usr/local/include/qt5/QtCore -isystem /usr/local/lib/qt5/mkspecs/freebsd-clang -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -std=c++11 -MD -MT avogadro/qtplugins/3dmol/CMakeFiles/ThreeDMol.dir/3dmoldialog.cpp. o -MF avogadro/qtplugins/3dmol/CMakeFiles/ThreeDMol.dir/3dmoldialog.cpp.o.d -o avogadro/qtplugins/3dmol/CMakeFiles/ThreeDMol.dir/3dmoldialog.cpp.o -c /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.92.1/avogadro/qtplugins/3dmol/3dmoldialog.cpp [226/458] /nxb-bin/usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -Iavogadro/qtplugins/3dmol/ThreeDMol_autogen/include -I. -I/wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.92.1 -Iavogadro/core -Iavogadro/io -Iavogadro/quantumio -Iavogadro/rendering -Iavogadro/qtgui -Iavogadro/qtopengl -Iavogadro/molequeue -Iavogadro/qtplugins/3dmol -isystem /usr/local/include/eigen3 -isystem /usr/local/include/qt5 -isystem /usr/local/include/qt5/QtWidgets -isystem /usr/local/include/qt5/QtGui -isystem /usr/local/include/qt5/QtCore -isystem /usr/local/lib/qt5/mkspecs/freebsd-clang -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -std=c++11 -MD -MT avogadro/qtplugins/3dmol/CMakeFiles/ThreeDMol.dir/ThreeDMolPlugin. cpp.o -MF avogadro/qtplugins/3dmol/CMakeFiles/ThreeDMol.dir/ThreeDMolPlugin.cpp.o.d -o avogadro/qtplugins/3dmol/CMakeFiles/ThreeDMol.dir/ThreeDMolPlugin.cpp.o -c avogadro/qtplugins/3dmol/ThreeDMolPlugin.cpp [227/458] : && /usr/local/bin/cmake -E remove lib/avogadro2/staticplugins/ThreeDMol.a && /nxb-bin/usr/bin/ar qc lib/avogadro2/staticplugins/ThreeDMol.a avogadro/qtplugins/3dmol/CMakeFiles/ThreeDMol.dir/ThreeDMol_autogen/mocs_compilation.cpp.o avogadro/qtplugins/3dmol/CMakeFiles/ThreeDMol.dir/3dmol.cpp.o avogadro/qtplugins/3dmol/CMakeFiles/ThreeDMol.dir/3dmoldialog.cpp.o avogadro/qtplugins/3dmol/CMakeFiles/ThreeDMol.dir/ThreeDMolPlugin.cpp.o && /nxb-bin/usr/bin/ranlib lib/avogadro2/staticplugins/ThreeDMol.a && : [228/458] cd /wrkdirs/usr/ports/science/avogadrolibs/work/.build/avogadro/qtplugins/bonding && /usr/local/bin/cmake -E cmake_autogen /wrkdirs/usr/ports/science/avogadrolibs/work/.build/avogadro/qtplugins/bonding/CMakeFiles/Bonding_autogen.dir/AutogenInfo.cmake Release [229/458] cd /wrkdirs/usr/ports/science/avogadrolibs/work/.build/avogadro/qtplugins/bonding && /usr/local/lib/qt5/bin/uic -o /wrkdirs/usr/ports/science/avogadrolibs/work/.build/avogadro/qtplugins/bonding/ui_bondingdialog.h /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.92.1/avogadro/qtplugins/bonding/bondingdialog.ui [230/458] /nxb-bin/usr/bin/c++ 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-fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fvisibility=hi dden -fvisibility-inlines-hidden -fPIC -fPIC -std=c++11 -MD -MT avogadro/qtplugins/coordinateeditor/CMakeFiles/CoordinateEditor.dir/coordinatetextedit.cpp.o -MF avogadro/qtplugins/coordinateeditor/CMakeFiles/CoordinateEditor.dir/coordinatetextedit.cpp.o.d -o avogadro/qtplugins/coordinateeditor/CMakeFiles/CoordinateEditor.dir/coordinatetextedit.cpp.o -c /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.92.1/avogadro/qtplugins/coordinateeditor/coordinatetextedit.cpp /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.92.1/avogadro/qtplugins/coordinateeditor/coordinatetextedit.cpp:35:50: warning: 'foreground' is deprecated: Use QPalette::windowText() instead [-Wdeprecated-declarations] m_unmarkedFormat.setForeground(qApp->palette().foreground().color()); ^ /usr/local/include/qt5/QtGui/qpalette.h:148:5: note: 'foreground' has been explicitly marked deprecated here QT_DEPRECATED_X("Use QPalette::windowText() instead") ^ /usr/local/include/qt5/QtCore/qglobal.h:294:33: note: expanded from macro 'QT_DEPRECATED_X' # define QT_DEPRECATED_X(text) Q_DECL_DEPRECATED_X(text) ^ /usr/local/include/qt5/QtCore/qcompilerdetection.h:649:55: note: expanded from macro 'Q_DECL_DEPRECATED_X' # define Q_DECL_DEPRECATED_X(text) __attribute__ ((__deprecated__(text))) ^ 1 warning generated. 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avogadro/qtplugins/coordinateeditor/CMakeFiles/CoordinateEditor.dir/CoordinateEditorPlugin.cpp.o && /nxb-bin/usr/bin/ranlib lib/avogadro2/staticplugins/CoordinateEditor.a && : [247/458] cd /wrkdirs/usr/ports/science/avogadrolibs/work/.build/avogadro/qtplugins/copypaste && /usr/local/bin/cmake -E cmake_autogen /wrkdirs/usr/ports/science/avogadrolibs/work/.build/avogadro/qtplugins/copypaste/CMakeFiles/CopyPaste_autogen.dir/AutogenInfo.cmake Release [248/458] /nxb-bin/usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -Iavogadro/qtplugins/copypaste/CopyPaste_autogen/include -I. -I/wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.92.1 -Iavogadro/core -Iavogadro/io -Iavogadro/quantumio -Iavogadro/rendering -Iavogadro/qtgui -Iavogadro/qtopengl -Iavogadro/molequeue -Iavogadro/qtplugins/copypaste -isystem /usr/local/include/eigen3 -isystem /usr/local/include/qt5 -isystem /usr/local/include/qt5/QtWidgets -isystem /usr/local/include/qt5/QtGui -isystem /usr/local/include/qt5/QtCore -isystem /usr/local/lib/qt5/mkspecs/freebsd-clang -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -std=c++11 -MD -MT avogadro/qtplugins/copypaste/CMakeFiles/CopyPaste.dir/Copy Paste_autogen/mocs_compilation.cpp.o -MF avogadro/qtplugins/copypaste/CMakeFiles/CopyPaste.dir/CopyPaste_autogen/mocs_compilation.cpp.o.d -o avogadro/qtplugins/copypaste/CMakeFiles/CopyPaste.dir/CopyPaste_autogen/mocs_compilation.cpp.o -c avogadro/qtplugins/copypaste/CopyPaste_autogen/mocs_compilation.cpp [249/458] /nxb-bin/usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -Iavogadro/qtplugins/copypaste/CopyPaste_autogen/include -I. -I/wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.92.1 -Iavogadro/core -Iavogadro/io -Iavogadro/quantumio -Iavogadro/rendering -Iavogadro/qtgui -Iavogadro/qtopengl -Iavogadro/molequeue -Iavogadro/qtplugins/copypaste -isystem /usr/local/include/eigen3 -isystem /usr/local/include/qt5 -isystem /usr/local/include/qt5/QtWidgets -isystem /usr/local/include/qt5/QtGui -isystem /usr/local/include/qt5/QtCore -isystem /usr/local/lib/qt5/mkspecs/freebsd-clang -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -std=c++11 -MD -MT avogadro/qtplugins/copypaste/CMakeFiles/CopyPaste.dir/copy paste.cpp.o -MF avogadro/qtplugins/copypaste/CMakeFiles/CopyPaste.dir/copypaste.cpp.o.d -o avogadro/qtplugins/copypaste/CMakeFiles/CopyPaste.dir/copypaste.cpp.o -c /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.92.1/avogadro/qtplugins/copypaste/copypaste.cpp [250/458] /nxb-bin/usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -Iavogadro/qtplugins/copypaste/CopyPaste_autogen/include -I. -I/wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.92.1 -Iavogadro/core -Iavogadro/io -Iavogadro/quantumio -Iavogadro/rendering -Iavogadro/qtgui -Iavogadro/qtopengl -Iavogadro/molequeue -Iavogadro/qtplugins/copypaste -isystem /usr/local/include/eigen3 -isystem /usr/local/include/qt5 -isystem /usr/local/include/qt5/QtWidgets -isystem /usr/local/include/qt5/QtGui -isystem /usr/local/include/qt5/QtCore -isystem /usr/local/lib/qt5/mkspecs/freebsd-clang -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -std=c++11 -MD -MT avogadro/qtplugins/copypaste/CMakeFiles/CopyPaste.dir/Copy PastePlugin.cpp.o -MF avogadro/qtplugins/copypaste/CMakeFiles/CopyPaste.dir/CopyPastePlugin.cpp.o.d -o avogadro/qtplugins/copypaste/CMakeFiles/CopyPaste.dir/CopyPastePlugin.cpp.o -c avogadro/qtplugins/copypaste/CopyPastePlugin.cpp [251/458] : && /usr/local/bin/cmake -E remove lib/avogadro2/staticplugins/CopyPaste.a && /nxb-bin/usr/bin/ar qc lib/avogadro2/staticplugins/CopyPaste.a avogadro/qtplugins/copypaste/CMakeFiles/CopyPaste.dir/CopyPaste_autogen/mocs_compilation.cpp.o avogadro/qtplugins/copypaste/CMakeFiles/CopyPaste.dir/copypaste.cpp.o avogadro/qtplugins/copypaste/CMakeFiles/CopyPaste.dir/CopyPastePlugin.cpp.o && /nxb-bin/usr/bin/ranlib lib/avogadro2/staticplugins/CopyPaste.a && : [252/458] cd /wrkdirs/usr/ports/science/avogadrolibs/work/.build/avogadro/qtplugins/crystal && /usr/local/bin/cmake -E cmake_autogen /wrkdirs/usr/ports/science/avogadrolibs/work/.build/avogadro/qtplugins/crystal/CMakeFiles/Crystal_autogen.dir/AutogenInfo.cmake Release [253/458] cd /wrkdirs/usr/ports/science/avogadrolibs/work/.build/avogadro/qtplugins/crystal && /usr/local/lib/qt5/bin/uic -o /wrkdirs/usr/ports/science/avogadrolibs/work/.build/avogadro/qtplugins/crystal/ui_importcrystaldialog.h /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.92.1/avogadro/qtplugins/crystal/importcrystaldialog.ui [254/458] cd /wrkdirs/usr/ports/science/avogadrolibs/work/.build/avogadro/qtplugins/crystal && /usr/local/lib/qt5/bin/uic -o /wrkdirs/usr/ports/science/avogadrolibs/work/.build/avogadro/qtplugins/crystal/ui_supercelldialog.h /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.92.1/avogadro/qtplugins/crystal/supercelldialog.ui [255/458] cd /wrkdirs/usr/ports/science/avogadrolibs/work/.build/avogadro/qtplugins/crystal && /usr/local/lib/qt5/bin/uic -o /wrkdirs/usr/ports/science/avogadrolibs/work/.build/avogadro/qtplugins/crystal/ui_unitcelldialog.h /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.92.1/avogadro/qtplugins/crystal/unitcelldialog.ui [256/458] cd /wrkdirs/usr/ports/science/avogadrolibs/work/.build/avogadro/qtplugins/crystal && /usr/local/lib/qt5/bin/uic -o /wrkdirs/usr/ports/science/avogadrolibs/work/.build/avogadro/qtplugins/crystal/ui_volumescalingdialog.h /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.92.1/avogadro/qtplugins/crystal/volumescalingdialog.ui [257/458] /nxb-bin/usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -Iavogadro/qtplugins/crystal/Crystal_autogen/include -I. -I/wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.92.1 -Iavogadro/core -Iavogadro/io -Iavogadro/quantumio -Iavogadro/rendering -Iavogadro/qtgui -Iavogadro/qtopengl -Iavogadro/molequeue -Iavogadro/qtplugins/crystal -isystem /usr/local/include/eigen3 -isystem /usr/local/include/qt5 -isystem /usr/local/include/qt5/QtWidgets -isystem /usr/local/include/qt5/QtGui -isystem /usr/local/include/qt5/QtCore -isystem /usr/local/lib/qt5/mkspecs/freebsd-clang -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -std=c++11 -MD -MT avogadro/qtplugins/crystal/CMakeFiles/Crystal.dir/Crystal_autoge n/mocs_compilation.cpp.o -MF avogadro/qtplugins/crystal/CMakeFiles/Crystal.dir/Crystal_autogen/mocs_compilation.cpp.o.d -o avogadro/qtplugins/crystal/CMakeFiles/Crystal.dir/Crystal_autogen/mocs_compilation.cpp.o -c avogadro/qtplugins/crystal/Crystal_autogen/mocs_compilation.cpp [258/458] /nxb-bin/usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -Iavogadro/qtplugins/crystal/Crystal_autogen/include -I. -I/wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.92.1 -Iavogadro/core -Iavogadro/io -Iavogadro/quantumio -Iavogadro/rendering -Iavogadro/qtgui -Iavogadro/qtopengl -Iavogadro/molequeue -Iavogadro/qtplugins/crystal -isystem /usr/local/include/eigen3 -isystem /usr/local/include/qt5 -isystem /usr/local/include/qt5/QtWidgets -isystem /usr/local/include/qt5/QtGui -isystem /usr/local/include/qt5/QtCore -isystem /usr/local/lib/qt5/mkspecs/freebsd-clang -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -std=c++11 -MD -MT avogadro/qtplugins/crystal/CMakeFiles/Crystal.dir/crystal.cpp.o -MF avogadro/qtplugins/crystal/CMakeFiles/Crystal.dir/crystal.cpp.o.d -o avogadro/qtplugins/crystal/CMakeFiles/Crystal.dir/crystal.cpp.o -c /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.92.1/avogadro/qtplugins/crystal/crystal.cpp [259/458] /nxb-bin/usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -Iavogadro/qtplugins/crystal/Crystal_autogen/include -I. -I/wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.92.1 -Iavogadro/core -Iavogadro/io -Iavogadro/quantumio -Iavogadro/rendering -Iavogadro/qtgui -Iavogadro/qtopengl -Iavogadro/molequeue -Iavogadro/qtplugins/crystal -isystem /usr/local/include/eigen3 -isystem /usr/local/include/qt5 -isystem /usr/local/include/qt5/QtWidgets -isystem /usr/local/include/qt5/QtGui -isystem /usr/local/include/qt5/QtCore -isystem /usr/local/lib/qt5/mkspecs/freebsd-clang -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -std=c++11 -MD -MT avogadro/qtplugins/crystal/CMakeFiles/Crystal.dir/importcrystald ialog.cpp.o -MF avogadro/qtplugins/crystal/CMakeFiles/Crystal.dir/importcrystaldialog.cpp.o.d -o avogadro/qtplugins/crystal/CMakeFiles/Crystal.dir/importcrystaldialog.cpp.o -c /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.92.1/avogadro/qtplugins/crystal/importcrystaldialog.cpp [260/458] /nxb-bin/usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -Iavogadro/qtplugins/crystal/Crystal_autogen/include -I. -I/wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.92.1 -Iavogadro/core -Iavogadro/io -Iavogadro/quantumio -Iavogadro/rendering -Iavogadro/qtgui -Iavogadro/qtopengl -Iavogadro/molequeue -Iavogadro/qtplugins/crystal -isystem /usr/local/include/eigen3 -isystem /usr/local/include/qt5 -isystem /usr/local/include/qt5/QtWidgets -isystem /usr/local/include/qt5/QtGui -isystem /usr/local/include/qt5/QtCore -isystem /usr/local/lib/qt5/mkspecs/freebsd-clang -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -std=c++11 -MD -MT avogadro/qtplugins/crystal/CMakeFiles/Crystal.dir/supercelldialo g.cpp.o -MF avogadro/qtplugins/crystal/CMakeFiles/Crystal.dir/supercelldialog.cpp.o.d -o avogadro/qtplugins/crystal/CMakeFiles/Crystal.dir/supercelldialog.cpp.o -c /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.92.1/avogadro/qtplugins/crystal/supercelldialog.cpp [261/458] /nxb-bin/usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -Iavogadro/qtplugins/crystal/Crystal_autogen/include -I. -I/wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.92.1 -Iavogadro/core -Iavogadro/io -Iavogadro/quantumio -Iavogadro/rendering -Iavogadro/qtgui -Iavogadro/qtopengl -Iavogadro/molequeue -Iavogadro/qtplugins/crystal -isystem /usr/local/include/eigen3 -isystem /usr/local/include/qt5 -isystem /usr/local/include/qt5/QtWidgets -isystem /usr/local/include/qt5/QtGui -isystem /usr/local/include/qt5/QtCore -isystem /usr/local/lib/qt5/mkspecs/freebsd-clang -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -std=c++11 -MD -MT avogadro/qtplugins/crystal/CMakeFiles/Crystal.dir/unitcelldialog .cpp.o -MF avogadro/qtplugins/crystal/CMakeFiles/Crystal.dir/unitcelldialog.cpp.o.d -o avogadro/qtplugins/crystal/CMakeFiles/Crystal.dir/unitcelldialog.cpp.o -c /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.92.1/avogadro/qtplugins/crystal/unitcelldialog.cpp /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.92.1/avogadro/qtplugins/crystal/unitcelldialog.cpp:321:30: warning: 'width' is deprecated: Use QFontMetrics::horizontalAdvance [-Wdeprecated-declarations] int minWidth = 3 * metrics.width('0') * (MATRIX_WIDTH + 1); ^ /usr/local/include/qt5/QtGui/qfontmetrics.h:111:5: note: 'width' has been explicitly marked deprecated here QT_DEPRECATED_X("Use QFontMetrics::horizontalAdvance") ^ /usr/local/include/qt5/QtCore/qglobal.h:294:33: note: expanded from macro 'QT_DEPRECATED_X' # define QT_DEPRECATED_X(text) Q_DECL_DEPRECATED_X(text) ^ /usr/local/include/qt5/QtCore/qcompilerdetection.h:649:55: note: expanded from macro 'Q_DECL_DEPRECATED_X' # define Q_DECL_DEPRECATED_X(text) __attribute__ ((__deprecated__(text))) ^ 1 warning generated. [262/458] /nxb-bin/usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -Iavogadro/qtplugins/crystal/Crystal_autogen/include -I. -I/wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.92.1 -Iavogadro/core -Iavogadro/io -Iavogadro/quantumio -Iavogadro/rendering -Iavogadro/qtgui -Iavogadro/qtopengl -Iavogadro/molequeue -Iavogadro/qtplugins/crystal -isystem /usr/local/include/eigen3 -isystem /usr/local/include/qt5 -isystem /usr/local/include/qt5/QtWidgets -isystem /usr/local/include/qt5/QtGui -isystem /usr/local/include/qt5/QtCore -isystem /usr/local/lib/qt5/mkspecs/freebsd-clang -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -std=c++11 -MD -MT avogadro/qtplugins/crystal/CMakeFiles/Crystal.dir/volumescalingd ialog.cpp.o -MF avogadro/qtplugins/crystal/CMakeFiles/Crystal.dir/volumescalingdialog.cpp.o.d -o avogadro/qtplugins/crystal/CMakeFiles/Crystal.dir/volumescalingdialog.cpp.o -c /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.92.1/avogadro/qtplugins/crystal/volumescalingdialog.cpp [263/458] /nxb-bin/usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -Iavogadro/qtplugins/crystal/Crystal_autogen/include -I. -I/wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.92.1 -Iavogadro/core -Iavogadro/io -Iavogadro/quantumio -Iavogadro/rendering -Iavogadro/qtgui -Iavogadro/qtopengl -Iavogadro/molequeue -Iavogadro/qtplugins/crystal -isystem /usr/local/include/eigen3 -isystem /usr/local/include/qt5 -isystem /usr/local/include/qt5/QtWidgets -isystem /usr/local/include/qt5/QtGui -isystem /usr/local/include/qt5/QtCore -isystem /usr/local/lib/qt5/mkspecs/freebsd-clang -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -std=c++11 -MD -MT avogadro/qtplugins/crystal/CMakeFiles/Crystal.dir/CrystalPlugin. cpp.o -MF avogadro/qtplugins/crystal/CMakeFiles/Crystal.dir/CrystalPlugin.cpp.o.d -o avogadro/qtplugins/crystal/CMakeFiles/Crystal.dir/CrystalPlugin.cpp.o -c avogadro/qtplugins/crystal/CrystalPlugin.cpp [264/458] : && /usr/local/bin/cmake -E remove lib/avogadro2/staticplugins/Crystal.a && /nxb-bin/usr/bin/ar qc lib/avogadro2/staticplugins/Crystal.a avogadro/qtplugins/crystal/CMakeFiles/Crystal.dir/Crystal_autogen/mocs_compilation.cpp.o avogadro/qtplugins/crystal/CMakeFiles/Crystal.dir/crystal.cpp.o avogadro/qtplugins/crystal/CMakeFiles/Crystal.dir/importcrystaldialog.cpp.o avogadro/qtplugins/crystal/CMakeFiles/Crystal.dir/supercelldialog.cpp.o 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/usr/local/include/qt5 -isystem /usr/local/include/qt5/QtWidgets -isystem /usr/local/include/qt5/QtGui -isystem /usr/local/include/qt5/QtCore -isystem /usr/local/lib/qt5/mkspecs/freebsd-clang -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -std=c++11 -MD -MT avogadro/qtplugins/crystal/CMakeFiles/CrystalScene.dir/Crys talScene_autogen/mocs_compilation.cpp.o -MF avogadro/qtplugins/crystal/CMakeFiles/CrystalScene.dir/CrystalScene_autogen/mocs_compilation.cpp.o.d -o avogadro/qtplugins/crystal/CMakeFiles/CrystalScene.dir/CrystalScene_autogen/mocs_compilation.cpp.o -c avogadro/qtplugins/crystal/CrystalScene_autogen/mocs_compilation.cpp [267/458] /nxb-bin/usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB 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-fno-strict-aliasing -isystem /usr/local/include -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -std=c++11 -MD -MT avogadro/qtplugins/crystal/CMakeFiles/CrystalScene.dir/Crys talScenePlugin.cpp.o -MF avogadro/qtplugins/crystal/CMakeFiles/CrystalScene.dir/CrystalScenePlugin.cpp.o.d -o avogadro/qtplugins/crystal/CMakeFiles/CrystalScene.dir/CrystalScenePlugin.cpp.o -c avogadro/qtplugins/crystal/CrystalScenePlugin.cpp [269/458] : && /usr/local/bin/cmake -E remove lib/avogadro2/staticplugins/CrystalScene.a && /nxb-bin/usr/bin/ar qc lib/avogadro2/staticplugins/CrystalScene.a avogadro/qtplugins/crystal/CMakeFiles/CrystalScene.dir/CrystalScene_autogen/mocs_compilation.cpp.o avogadro/qtplugins/crystal/CMakeFiles/CrystalScene.dir/crystalscene.cpp.o avogadro/qtplugins/crystal/CMakeFiles/CrystalScene.dir/CrystalScenePlugin.cpp.o && /nxb-bin/usr/bin/ranlib lib/avogadro2/staticplugins/CrystalScene.a && : [270/458] cd 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-fno-strict-aliasing -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -std=c++11 -MD -MT avogadro/qtplugins/customelements/CMakeFile s/CustomElements.dir/CustomElements_autogen/mocs_compilation.cpp.o -MF avogadro/qtplugins/customelements/CMakeFiles/CustomElements.dir/CustomElements_autogen/mocs_compilation.cpp.o.d -o avogadro/qtplugins/customelements/CMakeFiles/CustomElements.dir/CustomElements_autogen/mocs_compilation.cpp.o -c avogadro/qtplugins/customelements/CustomElements_autogen/mocs_compilation.cpp [272/458] /nxb-bin/usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -Iavogadro/qtplugins/customelements/CustomElements_autogen/include -I. -I/wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.92.1 -Iavogadro/core -Iavogadro/io -Iavogadro/quantumio -Iavogadro/rendering -Iavogadro/qtgui -Iavogadro/qtopengl -Iavogadro/molequeue -Iavogadro/qtplugins/customelements -isystem /usr/local/include/eigen3 -isystem /usr/local/include/qt5 -isystem /usr/local/include/qt5/QtWidgets -isystem /usr/local/include/qt5/QtGui -isystem /usr/local/include/qt5/QtCore -isystem /usr/local/lib/qt5/mkspecs/freebsd-clang -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -std=c++11 -MD -MT avogadro/qtplugins/customelements/CMakeFile s/CustomElements.dir/customelements.cpp.o -MF avogadro/qtplugins/customelements/CMakeFiles/CustomElements.dir/customelements.cpp.o.d -o avogadro/qtplugins/customelements/CMakeFiles/CustomElements.dir/customelements.cpp.o -c 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-fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -std=c++11 -MD -MT avogadro/qtplugins/customelements/CMakeFile s/CustomElements.dir/CustomElementsPlugin.cpp.o -MF avogadro/qtplugins/customelements/CMakeFiles/CustomElements.dir/CustomElementsPlugin.cpp.o.d -o avogadro/qtplugins/customelements/CMakeFiles/CustomElements.dir/CustomElementsPlugin.cpp.o -c avogadro/qtplugins/customelements/CustomElementsPlugin.cpp [274/458] : && /usr/local/bin/cmake -E remove lib/avogadro2/staticplugins/CustomElements.a && /nxb-bin/usr/bin/ar qc lib/avogadro2/staticplugins/CustomElements.a avogadro/qtplugins/customelements/CMakeFiles/CustomElements.dir/CustomElements_autogen/mocs_compilation.cpp.o avogadro/qtplugins/customelements/CMakeFiles/CustomElements.dir/customelements.cpp.o avogadro/qtplugins/customelements/CMakeFiles/CustomElements.dir/CustomElementsPlugin.cpp.o && /nxb-bin/usr/bin/ranlib lib/avogadro2/staticplugins/CustomElements.a && : [275/458] cd 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/usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -std=c++11 -MD -MT avogadro/qtopengl/CMakeFiles/AvogadroQtOpenGL.dir/AvogadroQtOpenGL_autogen/mocs_compilation.cpp.o -MF avo gadro/qtopengl/CMakeFiles/AvogadroQtOpenGL.dir/AvogadroQtOpenGL_autogen/mocs_compilation.cpp.o.d -o avogadro/qtopengl/CMakeFiles/AvogadroQtOpenGL.dir/AvogadroQtOpenGL_autogen/mocs_compilation.cpp.o -c avogadro/qtopengl/AvogadroQtOpenGL_autogen/mocs_compilation.cpp [277/458] /nxb-bin/usr/bin/c++ -DAvogadroQtOpenGL_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -Iavogadro/qtopengl/AvogadroQtOpenGL_autogen/include -I. -I/wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.92.1 -Iavogadro/core -Iavogadro/io -Iavogadro/quantumio -Iavogadro/rendering -Iavogadro/qtgui -Iavogadro/qtopengl -isystem /usr/local/include/eigen3 -isystem /usr/local/include/qt5 -isystem /usr/local/include/qt5/QtWidgets -isystem /usr/local/include/qt5/QtGui -isystem /usr/local/include/qt5/QtCore -isystem /usr/local/lib/qt5/mkspecs/freebsd-clang -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -std=c++11 -MD -MT avogadro/qtopengl/CMakeFiles/AvogadroQtOpenGL.dir/activeobjects.cpp.o -MF avogadro/qtopengl/CMakeFiles/Av ogadroQtOpenGL.dir/activeobjects.cpp.o.d -o avogadro/qtopengl/CMakeFiles/AvogadroQtOpenGL.dir/activeobjects.cpp.o -c /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.92.1/avogadro/qtopengl/activeobjects.cpp [278/458] /nxb-bin/usr/bin/c++ -DAvogadroQtOpenGL_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -Iavogadro/qtopengl/AvogadroQtOpenGL_autogen/include -I. -I/wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.92.1 -Iavogadro/core -Iavogadro/io -Iavogadro/quantumio -Iavogadro/rendering -Iavogadro/qtgui -Iavogadro/qtopengl -isystem /usr/local/include/eigen3 -isystem /usr/local/include/qt5 -isystem /usr/local/include/qt5/QtWidgets -isystem /usr/local/include/qt5/QtGui -isystem /usr/local/include/qt5/QtCore -isystem /usr/local/lib/qt5/mkspecs/freebsd-clang -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -std=c++11 -MD -MT avogadro/qtopengl/CMakeFiles/AvogadroQtOpenGL.dir/glwidget.cpp.o -MF avogadro/qtopengl/CMakeFiles/Avogadr oQtOpenGL.dir/glwidget.cpp.o.d -o avogadro/qtopengl/CMakeFiles/AvogadroQtOpenGL.dir/glwidget.cpp.o -c /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.92.1/avogadro/qtopengl/glwidget.cpp [279/458] /nxb-bin/usr/bin/c++ -DAvogadroQtOpenGL_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -Iavogadro/qtopengl/AvogadroQtOpenGL_autogen/include -I. -I/wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.92.1 -Iavogadro/core -Iavogadro/io -Iavogadro/quantumio -Iavogadro/rendering -Iavogadro/qtgui -Iavogadro/qtopengl -isystem /usr/local/include/eigen3 -isystem /usr/local/include/qt5 -isystem /usr/local/include/qt5/QtWidgets -isystem /usr/local/include/qt5/QtGui -isystem /usr/local/include/qt5/QtCore -isystem /usr/local/lib/qt5/mkspecs/freebsd-clang -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -std=c++11 -MD -MT avogadro/qtopengl/CMakeFiles/AvogadroQtOpenGL.dir/qttextrenderstrategy.cpp.o -MF avogadro/qtopengl/CMakeF iles/AvogadroQtOpenGL.dir/qttextrenderstrategy.cpp.o.d -o avogadro/qtopengl/CMakeFiles/AvogadroQtOpenGL.dir/qttextrenderstrategy.cpp.o -c /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.92.1/avogadro/qtopengl/qttextrenderstrategy.cpp [280/458] : && /nxb-bin/usr/bin/c++ -fPIC -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fstack-protector-strong -shared -Wl,-soname,libAvogadroQtOpenGL.so.1 -o lib/libAvogadroQtOpenGL.so.1.92.0 avogadro/qtopengl/CMakeFiles/AvogadroQtOpenGL.dir/AvogadroQtOpenGL_autogen/mocs_compilation.cpp.o avogadro/qtopengl/CMakeFiles/AvogadroQtOpenGL.dir/activeobjects.cpp.o avogadro/qtopengl/CMakeFiles/AvogadroQtOpenGL.dir/glwidget.cpp.o avogadro/qtopengl/CMakeFiles/AvogadroQtOpenGL.dir/qttextrenderstrategy.cpp.o -Wl,-rpath,/wrkdirs/usr/ports/science/avogadrolibs/work/.build/lib:/usr/local/lib/qt5:/usr/local/lib: lib/libAvogadroRendering.so.1.92.0 lib/libAvogadroQtGui.so.1.92.0 /usr/local/lib/qt5/libQt5Widgets.so.5.13.2 /usr/local/lib/libGLEW.so /usr/local/lib/libGL.so /usr/local/lib/libGLU.so lib/libAvogadroIO.so.1.92 .0 lib/libAvogadroCore.so.1.92.0 /usr/local/lib/qt5/libQt5Widgets.so.5.13.2 /usr/local/lib/qt5/libQt5Gui.so.5.13.2 /usr/local/lib/qt5/libQt5Core.so.5.13.2 /usr/local/lib/qt5/libQt5Gui.so.5.13.2 /usr/local/lib/qt5/libQt5Core.so.5.13.2 -Wl,-rpath-link,/usr/local/lib && : [281/458] /usr/local/bin/cmake -E cmake_symlink_library lib/libAvogadroQtOpenGL.so.1.92.0 lib/libAvogadroQtOpenGL.so.1 lib/libAvogadroQtOpenGL.so && : [282/458] cd /wrkdirs/usr/ports/science/avogadrolibs/work/.build/avogadro/qtplugins/selectiontool && /usr/local/bin/cmake -E cmake_autogen /wrkdirs/usr/ports/science/avogadrolibs/work/.build/avogadro/qtplugins/selectiontool/CMakeFiles/Selection_autogen.dir/AutogenInfo.cmake Release [283/458] cd 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/usr/local/lib/qt5/mkspecs/freebsd-clang -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -std=c++11 -MD -MT avogadro/qtplugins/selectiontool/CMakeFiles/Select ion.dir/Selection_autogen/mocs_compilation.cpp.o -MF avogadro/qtplugins/selectiontool/CMakeFiles/Selection.dir/Selection_autogen/mocs_compilation.cpp.o.d -o avogadro/qtplugins/selectiontool/CMakeFiles/Selection.dir/Selection_autogen/mocs_compilation.cpp.o -c avogadro/qtplugins/selectiontool/Selection_autogen/mocs_compilation.cpp [285/458] /nxb-bin/usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -Iavogadro/qtplugins/selectiontool/Selection_autogen/include -I. -I/wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.92.1 -Iavogadro/core -Iavogadro/io 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-fvisibility-inlines-hidden -fPIC -fPIC -std=c++11 -MD -MT avogadro/qtplugins/selectiontool/CMakeFiles/Select ion.dir/qrc_selectiontool.cpp.o -MF avogadro/qtplugins/selectiontool/CMakeFiles/Selection.dir/qrc_selectiontool.cpp.o.d -o avogadro/qtplugins/selectiontool/CMakeFiles/Selection.dir/qrc_selectiontool.cpp.o -c avogadro/qtplugins/selectiontool/qrc_selectiontool.cpp [287/458] /nxb-bin/usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -Iavogadro/qtplugins/selectiontool/Selection_autogen/include -I. -I/wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.92.1 -Iavogadro/core -Iavogadro/io -Iavogadro/quantumio -Iavogadro/rendering -Iavogadro/qtgui -Iavogadro/qtopengl -Iavogadro/molequeue -Iavogadro/qtplugins/selectiontool -isystem /usr/local/include/eigen3 -isystem /usr/local/include/qt5 -isystem /usr/local/include/qt5/QtWidgets -isystem /usr/local/include/qt5/QtGui -isystem /usr/local/include/qt5/QtCore -isystem /usr/local/lib/qt5/mkspecs/freebsd-clang -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -std=c++11 -MD -MT avogadro/qtplugins/selectiontool/CMakeFiles/Select ion.dir/SelectionPlugin.cpp.o -MF avogadro/qtplugins/selectiontool/CMakeFiles/Selection.dir/SelectionPlugin.cpp.o.d -o avogadro/qtplugins/selectiontool/CMakeFiles/Selection.dir/SelectionPlugin.cpp.o -c avogadro/qtplugins/selectiontool/SelectionPlugin.cpp [288/458] : && /usr/local/bin/cmake -E remove lib/avogadro2/staticplugins/Selection.a && /nxb-bin/usr/bin/ar qc lib/avogadro2/staticplugins/Selection.a avogadro/qtplugins/selectiontool/CMakeFiles/Selection.dir/Selection_autogen/mocs_compilation.cpp.o avogadro/qtplugins/selectiontool/CMakeFiles/Selection.dir/selectiontool.cpp.o 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-I/wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.92.1 -Iavogadro/core -Iavogadro/io -Iavogadro/quantumio -Iavogadro/rendering -Iavogadro/qtgui -Iavogadro/qtopengl -Iavogadro/molequeue -isystem /usr/local/include/eigen3 -isystem /usr/local/include/qt5 -isystem /usr/local/include/qt5/QtWidgets -isystem /usr/local/include/qt5/QtGui -isystem /usr/local/include/qt5/QtCore -isystem /usr/local/lib/qt5/mkspecs/freebsd-clang -isystem /usr/local/include/qt5/QtNetwork -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -std=c++11 -MD -MT avogadro/molequeue/CMa keFiles/AvogadroMoleQueue.dir/inputgeneratorwidget.cpp.o -MF avogadro/molequeue/CMakeFiles/AvogadroMoleQueue.dir/inputgeneratorwidget.cpp.o.d -o avogadro/molequeue/CMakeFiles/AvogadroMoleQueue.dir/inputgeneratorwidget.cpp.o -c /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.92.1/avogadro/molequeue/inputgeneratorwidget.cpp /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.92.1/avogadro/molequeue/inputgeneratorwidget.cpp:414:27: warning: 'width' is deprecated: Use QFontMetrics::horizontalAdvance [-Wdeprecated-declarations] int charWidth = metrics.width("i7OPlmWn9/") / 10; ^ /usr/local/include/qt5/QtGui/qfontmetrics.h:107:5: note: 'width' has been explicitly marked deprecated here QT_DEPRECATED_X("Use QFontMetrics::horizontalAdvance") ^ /usr/local/include/qt5/QtCore/qglobal.h:294:33: note: expanded from macro 'QT_DEPRECATED_X' # define QT_DEPRECATED_X(text) Q_DECL_DEPRECATED_X(text) ^ /usr/local/include/qt5/QtCore/qcompilerdetection.h:649:55: note: expanded from macro 'Q_DECL_DEPRECATED_X' # define Q_DECL_DEPRECATED_X(text) __attribute__ ((__deprecated__(text))) ^ 1 warning generated. [306/458] /nxb-bin/usr/bin/c++ -DAvogadroMoleQueue_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -Iavogadro/molequeue/AvogadroMoleQueue_autogen/include -I. -I/wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.92.1 -Iavogadro/core -Iavogadro/io -Iavogadro/quantumio -Iavogadro/rendering -Iavogadro/qtgui -Iavogadro/qtopengl -Iavogadro/molequeue -isystem /usr/local/include/eigen3 -isystem /usr/local/include/qt5 -isystem /usr/local/include/qt5/QtWidgets -isystem /usr/local/include/qt5/QtGui -isystem /usr/local/include/qt5/QtCore -isystem /usr/local/lib/qt5/mkspecs/freebsd-clang -isystem /usr/local/include/qt5/QtNetwork -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -std=c++11 -MD -MT avogadro/molequeue/CMa 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-fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -std=c++11 -MD -MT avogadro/molequeue/CMa keFiles/AvogadroMoleQueue.dir/molequeuemanager.cpp.o -MF avogadro/molequeue/CMakeFiles/AvogadroMoleQueue.dir/molequeuemanager.cpp.o.d -o avogadro/molequeue/CMakeFiles/AvogadroMoleQueue.dir/molequeuemanager.cpp.o -c /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.92.1/avogadro/molequeue/molequeuemanager.cpp [308/458] /nxb-bin/usr/bin/c++ -DAvogadroMoleQueue_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -Iavogadro/molequeue/AvogadroMoleQueue_autogen/include -I. -I/wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.92.1 -Iavogadro/core -Iavogadro/io -Iavogadro/quantumio -Iavogadro/rendering -Iavogadro/qtgui -Iavogadro/qtopengl -Iavogadro/molequeue -isystem /usr/local/include/eigen3 -isystem /usr/local/include/qt5 -isystem /usr/local/include/qt5/QtWidgets -isystem /usr/local/include/qt5/QtGui -isystem /usr/local/include/qt5/QtCore -isystem /usr/local/lib/qt5/mkspecs/freebsd-clang -isystem /usr/local/include/qt5/QtNetwork -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -std=c++11 -MD -MT avogadro/molequeue/CMa keFiles/AvogadroMoleQueue.dir/molequeuequeuelistmodel.cpp.o -MF avogadro/molequeue/CMakeFiles/AvogadroMoleQueue.dir/molequeuequeuelistmodel.cpp.o.d -o avogadro/molequeue/CMakeFiles/AvogadroMoleQueue.dir/molequeuequeuelistmodel.cpp.o -c /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.92.1/avogadro/molequeue/molequeuequeuelistmodel.cpp [309/458] /nxb-bin/usr/bin/c++ -DAvogadroMoleQueue_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -Iavogadro/molequeue/AvogadroMoleQueue_autogen/include -I. -I/wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.92.1 -Iavogadro/core -Iavogadro/io -Iavogadro/quantumio -Iavogadro/rendering -Iavogadro/qtgui -Iavogadro/qtopengl -Iavogadro/molequeue -isystem /usr/local/include/eigen3 -isystem /usr/local/include/qt5 -isystem /usr/local/include/qt5/QtWidgets -isystem /usr/local/include/qt5/QtGui -isystem /usr/local/include/qt5/QtCore -isystem /usr/local/lib/qt5/mkspecs/freebsd-clang -isystem /usr/local/include/qt5/QtNetwork -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -std=c++11 -MD -MT avogadro/molequeue/CMa keFiles/AvogadroMoleQueue.dir/molequeuewidget.cpp.o -MF avogadro/molequeue/CMakeFiles/AvogadroMoleQueue.dir/molequeuewidget.cpp.o.d -o avogadro/molequeue/CMakeFiles/AvogadroMoleQueue.dir/molequeuewidget.cpp.o -c /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.92.1/avogadro/molequeue/molequeuewidget.cpp [310/458] : && /nxb-bin/usr/bin/c++ -fPIC -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fstack-protector-strong -shared -Wl,-soname,libAvogadroMoleQueue.so.1 -o lib/libAvogadroMoleQueue.so.1.92.0 avogadro/molequeue/CMakeFiles/AvogadroMoleQueue.dir/AvogadroMoleQueue_autogen/mocs_compilation.cpp.o avogadro/molequeue/CMakeFiles/AvogadroMoleQueue.dir/batchjob.cpp.o avogadro/molequeue/CMakeFiles/AvogadroMoleQueue.dir/inputgenerator.cpp.o avogadro/molequeue/CMakeFiles/AvogadroMoleQueue.dir/inputgeneratordialog.cpp.o avogadro/molequeue/CMakeFiles/AvogadroMoleQueue.dir/inputgeneratorwidget.cpp.o avogadro/molequeue/CMakeFiles/AvogadroMoleQueue.dir/molequeuedialog.cpp.o avogadro/molequeue/CMakeFiles/AvogadroMoleQueue.dir/molequeuemanager.cpp.o avogadro/molequeue/CMakeFiles/AvogadroMoleQueue.dir/molequeuequeuelistmo del.cpp.o avogadro/molequeue/CMakeFiles/AvogadroMoleQueue.dir/molequeuewidget.cpp.o -Wl,-rpath,/wrkdirs/usr/ports/science/avogadrolibs/work/.build/lib:/usr/local/lib:/usr/local/lib/qt5: lib/libAvogadroQtGui.so.1.92.0 /usr/local/lib/libMoleQueueClient.so /usr/local/lib/qt5/libQt5Widgets.so.5.13.2 /usr/local/lib/qt5/libQt5Network.so.5.13.2 lib/libAvogadroIO.so.1.92.0 lib/libAvogadroCore.so.1.92.0 /usr/local/lib/qt5/libQt5Widgets.so.5.13.2 /usr/local/lib/qt5/libQt5Gui.so.5.13.2 /usr/local/lib/qt5/libQt5Core.so.5.13.2 /usr/local/lib/qt5/libQt5Gui.so.5.13.2 /usr/local/lib/qt5/libQt5Core.so.5.13.2 -Wl,-rpath-link,/usr/local/lib && : [311/458] /usr/local/bin/cmake -E cmake_symlink_library lib/libAvogadroMoleQueue.so.1.92.0 lib/libAvogadroMoleQueue.so.1 lib/libAvogadroMoleQueue.so && : [312/458] cd /wrkdirs/usr/ports/science/avogadrolibs/work/.build/avogadro/qtplugins/apbs && /usr/local/bin/cmake -E cmake_autogen /wrkdirs/usr/ports/science/avogadrolibs/work/.build/avogadro/qtplugins/apbs/CMakeFiles/apbs_autogen.dir/AutogenInfo.cmake Release [313/458] cd /wrkdirs/usr/ports/science/avogadrolibs/work/.build/avogadro/qtplugins/apbs && /usr/local/lib/qt5/bin/uic -o /wrkdirs/usr/ports/science/avogadrolibs/work/.build/avogadro/qtplugins/apbs/ui_apbsdialog.h /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.92.1/avogadro/qtplugins/apbs/apbsdialog.ui [314/458] cd /wrkdirs/usr/ports/science/avogadrolibs/work/.build/avogadro/qtplugins/apbs && /usr/local/lib/qt5/bin/uic -o /wrkdirs/usr/ports/science/avogadrolibs/work/.build/avogadro/qtplugins/apbs/ui_apbsoutputdialog.h /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.92.1/avogadro/qtplugins/apbs/apbsoutputdialog.ui [315/458] /nxb-bin/usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -Iavogadro/qtplugins/apbs/apbs_autogen/include -I. -I/wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.92.1 -Iavogadro/core -Iavogadro/io -Iavogadro/quantumio -Iavogadro/rendering -Iavogadro/qtgui -Iavogadro/qtopengl -Iavogadro/molequeue -Iavogadro/qtplugins/apbs -isystem /usr/local/include/eigen3 -isystem /usr/local/include/qt5 -isystem /usr/local/include/qt5/QtWidgets -isystem /usr/local/include/qt5/QtGui -isystem /usr/local/include/qt5/QtCore -isystem /usr/local/lib/qt5/mkspecs/freebsd-clang -isystem /usr/local/include/qt5/QtNetwork -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem 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-I/wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.92.1 -Iavogadro/core -Iavogadro/io -Iavogadro/quantumio -Iavogadro/rendering -Iavogadro/qtgui -Iavogadro/qtopengl -Iavogadro/molequeue -Iavogadro/qtplugins/quantuminput -isystem /usr/local/include/eigen3 -isystem /usr/local/include/qt5 -isystem /usr/local/include/qt5/QtWidgets -isystem /usr/local/include/qt5/QtGui -isystem /usr/local/include/qt5/QtCore -isystem /usr/local/lib/qt5/mkspecs/freebsd-clang -isystem /usr/local/include/qt5/QtNetwork -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -std=c++1 1 -MD -MT avogadro/qtplugins/quantuminput/CMakeFiles/QuantumInput.dir/QuantumInputPlugin.cpp.o -MF avogadro/qtplugins/quantuminput/CMakeFiles/QuantumInput.dir/QuantumInputPlugin.cpp.o.d -o 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&& /usr/local/lib/qt5/bin/uic -o /wrkdirs/usr/ports/science/avogadrolibs/work/.build/avogadro/qtplugins/editor/ui_editortoolwidget.h /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.92.1/avogadro/qtplugins/editor/editortoolwidget.ui [337/458] cd /wrkdirs/usr/ports/science/avogadrolibs/work/.build/avogadro/qtplugins/editor && /usr/local/lib/qt5/bin/rcc --name editor --output /wrkdirs/usr/ports/science/avogadrolibs/work/.build/avogadro/qtplugins/editor/qrc_editor.cpp /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.92.1/avogadro/qtplugins/editor/editor.qrc [338/458] /nxb-bin/usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -Iavogadro/qtplugins/editor/Editor_autogen/include -I. -I/wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.92.1 -Iavogadro/core -Iavogadro/io -Iavogadro/quantumio -Iavogadro/rendering -Iavogadro/qtgui -Iavogadro/qtopengl -Iavogadro/molequeue -Iavogadro/qtplugins/editor -isystem 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avogadro/qtplugins/editor/CMakeFiles/Editor.dir/editor.cpp.o -c /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.92.1/avogadro/qtplugins/editor/editor.cpp [340/458] /nxb-bin/usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -Iavogadro/qtplugins/editor/Editor_autogen/include -I. -I/wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.92.1 -Iavogadro/core -Iavogadro/io -Iavogadro/quantumio -Iavogadro/rendering -Iavogadro/qtgui -Iavogadro/qtopengl -Iavogadro/molequeue -Iavogadro/qtplugins/editor -isystem /usr/local/include/eigen3 -isystem /usr/local/include/qt5 -isystem /usr/local/include/qt5/QtWidgets -isystem /usr/local/include/qt5/QtGui -isystem /usr/local/include/qt5/QtCore -isystem /usr/local/lib/qt5/mkspecs/freebsd-clang -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -std=c++11 -MD -MT avogadro/qtplugins/editor/CMakeFiles/Editor.dir/editortoolwidget.cp p.o -MF avogadro/qtplugins/editor/CMakeFiles/Editor.dir/editortoolwidget.cpp.o.d -o avogadro/qtplugins/editor/CMakeFiles/Editor.dir/editortoolwidget.cpp.o -c /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.92.1/avogadro/qtplugins/editor/editortoolwidget.cpp /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.92.1/avogadro/qtplugins/editor/editortoolwidget.cpp:122:3: warning: 'qSort<QList<unsigned char> >' is deprecated: Use std::sort [-Wdeprecated-declarations] qSort(allElements); ^ /usr/local/include/qt5/QtCore/qalgorithms.h:188:1: note: 'qSort<QList<unsigned char> >' has been explicitly marked deprecated here QT_DEPRECATED_X("Use std::sort") inline void qSort(Container &c) ^ /usr/local/include/qt5/QtCore/qglobal.h:294:33: note: expanded from macro 'QT_DEPRECATED_X' # define QT_DEPRECATED_X(text) Q_DECL_DEPRECATED_X(text) ^ /usr/local/include/qt5/QtCore/qcompilerdetection.h:649:55: note: expanded from macro 'Q_DECL_DEPRECATED_X' # define Q_DECL_DEPRECATED_X(text) __attribute__ ((__deprecated__(text))) ^ 1 warning generated. 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-isystem /usr/local/include -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -std=c++11 -MD -MT avogadro/qtplugins/editor/CMakeFiles/Editor.dir/EditorPlugin.cpp.o -MF avogadro/qtplugins/editor/CMakeFiles/Editor.dir/EditorPlugin.cpp.o.d -o avogadro/qtplugins/editor/CMakeFiles/Editor.dir/EditorPlugin.cpp.o -c avogadro/qtplugins/editor/EditorPlugin.cpp [343/458] : && /usr/local/bin/cmake -E remove lib/avogadro2/staticplugins/Editor.a && /nxb-bin/usr/bin/ar qc lib/avogadro2/staticplugins/Editor.a avogadro/qtplugins/editor/CMakeFiles/Editor.dir/Editor_autogen/mocs_compilation.cpp.o avogadro/qtplugins/editor/CMakeFiles/Editor.dir/editor.cpp.o avogadro/qtplugins/editor/CMakeFiles/Editor.dir/editortoolwidget.cpp.o avogadro/qtplugins/editor/CMakeFiles/Editor.dir/qrc_editor.cpp.o avogadro/qtplugins/editor/CMakeFiles/Editor.dir/EditorPlugin.cpp.o && /nxb-bin/usr/bin/ranlib lib/avogadro2/staticplugins/Editor.a && : [344/458] cd 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/usr/local/include/eigen3 -isystem /usr/local/include/qt5 -isystem /usr/local/include/qt5/QtWidgets -isystem /usr/local/include/qt5/QtGui -isystem /usr/local/include/qt5/QtCore -isystem /usr/local/lib/qt5/mkspecs/freebsd-clang -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -std=c++11 -MD -MT avogadro/qtplugins/hydrogens/CMakeFiles/Hydrogens.dir/hydr ogens.cpp.o -MF avogadro/qtplugins/hydrogens/CMakeFiles/Hydrogens.dir/hydrogens.cpp.o.d -o avogadro/qtplugins/hydrogens/CMakeFiles/Hydrogens.dir/hydrogens.cpp.o -c /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.92.1/avogadro/qtplugins/hydrogens/hydrogens.cpp [347/458] /nxb-bin/usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB 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avogadro/qtplugins/hydrogens/CMakeFiles/Hydrogens.dir/HydrogensPlugin.cpp.o -c avogadro/qtplugins/hydrogens/HydrogensPlugin.cpp [348/458] : && /usr/local/bin/cmake -E remove lib/avogadro2/staticplugins/Hydrogens.a && /nxb-bin/usr/bin/ar qc lib/avogadro2/staticplugins/Hydrogens.a avogadro/qtplugins/hydrogens/CMakeFiles/Hydrogens.dir/Hydrogens_autogen/mocs_compilation.cpp.o avogadro/qtplugins/hydrogens/CMakeFiles/Hydrogens.dir/hydrogens.cpp.o avogadro/qtplugins/hydrogens/CMakeFiles/Hydrogens.dir/HydrogensPlugin.cpp.o && /nxb-bin/usr/bin/ranlib lib/avogadro2/staticplugins/Hydrogens.a && : [349/458] cd /wrkdirs/usr/ports/science/avogadrolibs/work/.build/avogadro/qtplugins/importpqr && /usr/local/bin/cmake -E cmake_autogen /wrkdirs/usr/ports/science/avogadrolibs/work/.build/avogadro/qtplugins/importpqr/CMakeFiles/ImportPQR_autogen.dir/AutogenInfo.cmake Release [350/458] cd /wrkdirs/usr/ports/science/avogadrolibs/work/.build/avogadro/qtplugins/importpqr && /usr/local/lib/qt5/bin/uic -o 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-pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/inc lude -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -std=c++11 -MD -MT avogadro/qtplugins/importpqr/CMakeFiles/ImportPQR.dir/pqrwidget.cpp.o -MF avogadro/qtplugins/importpqr/CMakeFiles/ImportPQR.dir/pqrwidget.cpp.o.d -o avogadro/qtplugins/importpqr/CMakeFiles/ImportPQR.dir/pqrwidget.cpp.o -c /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.92.1/avogadro/qtplugins/importpqr/pqrwidget.cpp [354/458] /nxb-bin/usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -Iavogadro/qtplugins/importpqr/ImportPQR_autogen/include -I. -I/wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.92.1 -Iavogadro/core -Iavogadro/io -Iavogadro/quantumio -Iavogadro/rendering -Iavogadro/qtgui -Iavogadro/qtopengl -Iavogadro/molequeue -Iavogadro/qtplugins/importpqr -isystem /usr/local/include/eigen3 -isystem /usr/local/include/qt5 -isystem /usr/local/include/qt5/QtWidgets -isystem /usr/local/include/qt5/QtGui -isystem /usr/local/include/qt5/QtCore -isystem /usr/local/lib/qt5/mkspecs/freebsd-clang -isystem /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.92.1/thirdparty -isystem /usr/local/include/qt5/QtNetwork -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/inc lude -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -std=c++11 -MD -MT avogadro/qtplugins/importpqr/CMakeFiles/ImportPQR.dir/pqrrequest.cpp.o -MF avogadro/qtplugins/importpqr/CMakeFiles/ImportPQR.dir/pqrrequest.cpp.o.d -o avogadro/qtplugins/importpqr/CMakeFiles/ImportPQR.dir/pqrrequest.cpp.o -c /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.92.1/avogadro/qtplugins/importpqr/pqrrequest.cpp [355/458] /nxb-bin/usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -Iavogadro/qtplugins/importpqr/ImportPQR_autogen/include -I. -I/wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.92.1 -Iavogadro/core -Iavogadro/io -Iavogadro/quantumio -Iavogadro/rendering -Iavogadro/qtgui -Iavogadro/qtopengl -Iavogadro/molequeue -Iavogadro/qtplugins/importpqr -isystem /usr/local/include/eigen3 -isystem /usr/local/include/qt5 -isystem /usr/local/include/qt5/QtWidgets -isystem /usr/local/include/qt5/QtGui -isystem /usr/local/include/qt5/QtCore -isystem /usr/local/lib/qt5/mkspecs/freebsd-clang -isystem /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.92.1/thirdparty -isystem /usr/local/include/qt5/QtNetwork -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/inc lude -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -std=c++11 -MD -MT avogadro/qtplugins/importpqr/CMakeFiles/ImportPQR.dir/ImportPQRPlugin.cpp.o -MF avogadro/qtplugins/importpqr/CMakeFiles/ImportPQR.dir/ImportPQRPlugin.cpp.o.d -o avogadro/qtplugins/importpqr/CMakeFiles/ImportPQR.dir/ImportPQRPlugin.cpp.o -c avogadro/qtplugins/importpqr/ImportPQRPlugin.cpp [356/458] : && /usr/local/bin/cmake -E remove lib/avogadro2/staticplugins/ImportPQR.a && /nxb-bin/usr/bin/ar qc lib/avogadro2/staticplugins/ImportPQR.a avogadro/qtplugins/importpqr/CMakeFiles/ImportPQR.dir/ImportPQR_autogen/mocs_compilation.cpp.o avogadro/qtplugins/importpqr/CMakeFiles/ImportPQR.dir/importpqr.cpp.o avogadro/qtplugins/importpqr/CMakeFiles/ImportPQR.dir/pqrwidget.cpp.o avogadro/qtplugins/importpqr/CMakeFiles/ImportPQR.dir/pqrrequest.cpp.o avogadro/qtplugins/importpqr/CMakeFiles/ImportPQR.dir/ImportPQRPlugin.cpp.o && /nxb-bin/usr/bin/ranlib lib/avogadro2/staticplugins/ImportPQR.a && : [357/458] cd /wrkdirs/usr/ports/science/avogadrolibs/work/.build/avogadro/qtplugins/lammpsinput && /usr/local/bin/cmake -E cmake_autogen /wrkdirs/usr/ports/science/avogadrolibs/work/.build/avogadro/qtplugins/lammpsinput/CMakeFiles/LammpsInput_autogen.dir/AutogenInfo.cmake Release FAILED: avogadro/qtplugins/lammpsinput/CMakeFiles/LammpsInput_autogen avogadro/qtplugins/lammpsinput/LammpsInput_autogen/mocs_compilation.cpp cd /wrkdirs/usr/ports/science/avogadrolibs/work/.build/avogadro/qtplugins/lammpsinput && /usr/local/bin/cmake -E cmake_autogen /wrkdirs/usr/ports/science/avogadrolibs/work/.build/avogadro/qtplugins/lammpsinput/CMakeFiles/LammpsInput_autogen.dir/AutogenInfo.cmake Release Fatal error 'thread 0xf40c1d00 exits with resources held!' at line 320 in file /usr/local/poudriere/jails/120armv6/usr/src/lib/libthr/thread/thr_exit.c (errno = 0) qemu: uncaught target signal 6 (Abort trap) - core dumped ninja: build stopped: subcommand failed. *** Error code 1 Stop. make: stopped in /usr/ports/science/avogadrolibs
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