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Date:      Tue, 21 Jan 2020 23:40:33 +0000
From:      bugzilla-noreply@freebsd.org
To:        ports-bugs@FreeBSD.org
Subject:   [Bug 243497] [patch] math/py-numpy build fails with OpenBlas
Message-ID:  <bug-243497-7788@https.bugs.freebsd.org/bugzilla/>
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https://bugs.freebsd.org/bugzilla/show_bug.cgi?id=3D243497

            Bug ID: 243497
           Summary: [patch] math/py-numpy build fails with OpenBlas
           Product: Ports & Packages
           Version: Latest
          Hardware: Any
                OS: Any
            Status: New
          Severity: Affects Only Me
          Priority: ---
         Component: Individual Port(s)
          Assignee: python@FreeBSD.org
          Reporter: rsmith@xs4all.nl
             Flags: maintainer-feedback?(python@FreeBSD.org)
          Assignee: python@FreeBSD.org
 Attachment #210941 text/plain
         mime type:

Created attachment 210941
  --> https://bugs.freebsd.org/bugzilla/attachment.cgi?id=3D210941&action=
=3Dedit
Updated files/patch-numpy-distutils-system_info.py

TL;DR

* Problem: Compiling py37-numpy-1.16.5_3,1 with OpenBlas fails in
numpy/distutils/system_info.py with an uncaught distutils.errors.LinkError
exception.
* Solution: also catch distutils.errors.LinkError on line 1742 of
numpy/distutils/system_info.py.

This is the error (only the last part shown for clarity).

    File
"/usr/ports/math/py-numpy/work-py37/numpy-1.16.5/numpy/distutils/system_inf=
o.py",
line 1740, in has_cblas
        extra_postargs=3Dinfo.get('extra_link_args', []))
    File "/usr/local/lib/python3.7/distutils/ccompiler.py", line 734, in
link_executable
        debug, extra_preargs, extra_postargs, None, target_lang)
    File "/usr/local/lib/python3.7/distutils/unixccompiler.py", line 206, in
link
        raise LinkError(msg)
    distutils.errors.LinkError: Command "cc
/tmp/tmpm3gnb0ev/tmp/tmpm3gnb0ev/source.o -L/usr/local/lib -lblas -o
/tmp/tmpm3gnb0ev/a.out" failed with exit status 1
    *** Error code 1

    Stop.
    make[1]: stopped in /usr/ports/math/py-numpy
    *** Error code 1

    Stop.
    make: stopped in /usr/ports/math/py-numpy

This is the relevant code:

        try:
            with open(src, 'wt') as f:
                f.write(s)

            try:
                # check we can compile (find headers)
                obj =3D c.compile([src], output_dir=3Dtmpdir,
                                include_dirs=3Dself.get_include_dirs())

                # check we can link (find library)
                # some systems have separate cblas and blas libs. First
                # check for cblas lib, and if not present check for blas li=
b.
                try:
                    c.link_executable(obj, os.path.join(tmpdir, "a.out"),
                                      libraries=3D["cblas"],
                                      library_dirs=3Dinfo['library_dirs'],
=20=20=20=20=20=20=20=20=20=20=20=20=20=20=20=20=20=20=20=20=20=20=20=20=20=
=20=20=20=20=20=20=20=20=20=20=20=20
extra_postargs=3Dinfo.get('extra_link_args', []))
                    res =3D "cblas"
                except distutils.ccompiler.LinkError:
                    c.link_executable(obj, os.path.join(tmpdir, "a.out"),
                                      libraries=3D["blas"],
                                      library_dirs=3Dinfo['library_dirs'],
=20=20=20=20=20=20=20=20=20=20=20=20=20=20=20=20=20=20=20=20=20=20=20=20=20=
=20=20=20=20=20=20=20=20=20=20=20=20
extra_postargs=3Dinfo.get('extra_link_args', []))
                    res =3D "blas"
            except distutils.ccompiler.CompileError:
                res =3D None
        finally:
            shutil.rmtree(tmpdir)
        return res

If linking with =E2=80=9Ccblas=E2=80=9D fails, it tries again by linking wi=
th =E2=80=9Cblas=E2=80=9D.
However, the last =E2=80=9Cexcept=E2=80=9D only handles a compilation error=
 but not a linking
error.

When we change:

            except distutils.ccompiler.CompileError:

to

            except (distutils.ccompiler.CompileError,
distutils.ccompiler.LinkError):

the problem is fixed.

--=20
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