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Date:      Sat, 13 Nov 2021 09:24:14 GMT
From:      pkg-fallout@FreeBSD.org
To:        yuri@FreeBSD.org
Cc:        pkg-fallout@FreeBSD.org
Subject:   [package - main-amd64-default][science/qbox] Failed for qbox-1.73.3 in build
Message-ID:  <202111130924.1AD9OEL1061928@beefy18.nyi.freebsd.org>

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You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.

Maintainer:     yuri@FreeBSD.org
Log URL:        http://beefy18.nyi.freebsd.org/data/main-amd64-default/p0bef5c19453e_sd032cda0d0/logs/qbox-1.73.3.log
Build URL:      http://beefy18.nyi.freebsd.org/build.html?mastername=main-amd64-default&build=p0bef5c19453e_sd032cda0d0
Log:

=>> Building science/qbox
build started at Sat Nov 13 09:23:45 UTC 2021
port directory: /usr/ports/science/qbox
package name: qbox-1.73.3
building for: FreeBSD main-amd64-default-job-11 14.0-CURRENT FreeBSD 14.0-CURRENT 1400041 amd64
maintained by: yuri@FreeBSD.org
Makefile ident: 
Poudriere version: 3.2.8-21-g883afb07
Host OSVERSION: 1400008
Jail OSVERSION: 1400041
Job Id: 11




!!! Jail is newer than host. (Jail: 1400041, Host: 1400008) !!!
!!! This is not supported. !!!
!!! Host kernel must be same or newer than jail. !!!
!!! Expect build failures. !!!



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---Begin OPTIONS List---
---End OPTIONS List---

--MAINTAINER--
yuri@FreeBSD.org
--End MAINTAINER--

--CONFIGURE_ARGS--

--End CONFIGURE_ARGS--

--CONFIGURE_ENV--
MAKE=gmake XDG_DATA_HOME=/wrkdirs/usr/ports/science/qbox/work  XDG_CONFIG_HOME=/wrkdirs/usr/ports/science/qbox/work  XDG_CACHE_HOME=/wrkdirs/usr/ports/science/qbox/work/.cache  HOME=/wrkdirs/usr/ports/science/qbox/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/science/qbox/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin SHELL=/bin/sh CONFIG_SHELL=/bin/sh CMAKE_PREFIX_PATH="/usr/local"
--End CONFIGURE_ENV--

--MAKE_ENV--
XDG_DATA_HOME=/wrkdirs/usr/ports/science/qbox/work  XDG_CONFIG_HOME=/wrkdirs/usr/ports/science/qbox/work  XDG_CACHE_HOME=/wrkdirs/usr/ports/science/qbox/work/.cache  HOME=/wrkdirs/usr/ports/science/qbox/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/science/qbox/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin NO_PIE=yes MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES PREFIX=/usr/local  LOCALBASE=/usr/local  CC="cc" CFLAGS="-O2 -pipe  -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing "  CPP="cpp" CPPFLAGS="-isystem /usr/local/include"  LDFLAGS=" -fstack-protector-strong -L/usr/local/lib " LIBS=""  CXX="c++" CXXFLAGS="-O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing  -isystem /usr/local/include "  MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install  -s -m 555"  BSD_INSTALL_LIB="install  -s -m 0644"  BSD_INSTALL_SCRIPT="install  -m 555"  BSD_INSTALL_DATA="install  -m 0644"  BSD_INSTA
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--End PLIST_SUB--

--SUB_LIST--
PREFIX=/usr/local LOCALBASE=/usr/local  DATADIR=/usr/local/share/qbox DOCSDIR=/usr/local/share/doc/qbox EXAMPLESDIR=/usr/local/share/examples/qbox  WWWDIR=/usr/local/www/qbox ETCDIR=/usr/local/etc/qbox
--End SUB_LIST--

---Begin make.conf---
USE_PACKAGE_DEPENDS=yes
BATCH=yes
WRKDIRPREFIX=/wrkdirs
PORTSDIR=/usr/ports
PACKAGES=/packages
DISTDIR=/distfiles
PACKAGE_BUILDING=yes
PACKAGE_BUILDING_FLAVORS=yes
#### /usr/local/etc/poudriere.d/make.conf ####
# XXX: We really need this but cannot use it while 'make checksum' does not
# try the next mirror on checksum failure.  It currently retries the same
# failed mirror and then fails rather then trying another.  It *does*
# try the next if the size is mismatched though.
#MASTER_SITE_FREEBSD=yes
# Build ALLOW_MAKE_JOBS_PACKAGES with 2 jobs
MAKE_JOBS_NUMBER=2
#### /usr/ports/Mk/Scripts/ports_env.sh ####
_CCVERSION_921dbbb2=FreeBSD clang version 12.0.1 (git@github.com:llvm/llvm-project.git llvmorg-12.0.1-0-gfed41342a82f) Target: x86_64-unknown-freebsd14.0 Thread model: posix InstalledDir: /usr/bin
_ALTCCVERSION_921dbbb2=none
_CXXINTERNAL_acaad9ca=FreeBSD clang version 12.0.1 (git@github.com:llvm/llvm-project.git llvmorg-12.0.1-0-gfed41342a82f) Target: x86_64-unknown-freebsd14.0 Thread model: posix InstalledDir: /usr/bin "/usr/bin/ld" "--eh-frame-hdr" "-dynamic-linker" "/libexec/ld-elf.so.1" "--hash-style=both" "--enable-new-dtags" "-o" "a.out" "/usr/lib/crt1.o" "/usr/lib/crti.o" "/usr/lib/crtbegin.o" "-L/usr/lib" "/dev/null" "-lc++" "-lm" "-lgcc" "--as-needed" "-lgcc_s" "--no-as-needed" "-lc" "-lgcc" "--as-needed" "-lgcc_s" "--no-as-needed" "/usr/lib/crtend.o" "/usr/lib/crtn.o"
CC_OUTPUT_921dbbb2_58173849=yes
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CC_OUTPUT_921dbbb2_6a4fe7f5=yes
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CC_OUTPUT_921dbbb2_67d20829=yes
CC_OUTPUT_921dbbb2_bfa62e83=yes
CC_OUTPUT_921dbbb2_f0b4d593=yes
CC_OUTPUT_921dbbb2_308abb44=yes
CC_OUTPUT_921dbbb2_f00456e5=yes
CC_OUTPUT_921dbbb2_65ad290d=yes
CC_OUTPUT_921dbbb2_f2776b26=yes
CC_OUTPUT_921dbbb2_b2657cc3=yes
CC_OUTPUT_921dbbb2_380987f7=yes
CC_OUTPUT_921dbbb2_160933ec=yes
CC_OUTPUT_921dbbb2_fb62803b=yes
_OBJC_CCVERSION_921dbbb2=FreeBSD clang version 12.0.1 (git@github.com:llvm/llvm-project.git llvmorg-12.0.1-0-gfed41342a82f) Target: x86_64-unknown-freebsd14.0 Thread model: posix InstalledDir: /usr/bin
_OBJC_ALTCCVERSION_921dbbb2=none
ARCH=amd64
OPSYS=FreeBSD
_OSRELEASE=14.0-CURRENT
OSREL=14.0
OSVERSION=1400041
PYTHONBASE=/usr/local
HAVE_COMPAT_IA32_KERN=YES
CONFIGURE_MAX_CMD_LEN=524288
HAVE_PORTS_ENV=1
#### Misc Poudriere ####
GID=0
UID=0
---End make.conf---
--Resource limits--
cpu time               (seconds, -t)  unlimited
file size           (512-blocks, -f)  unlimited
data seg size           (kbytes, -d)  33554432
stack size              (kbytes, -s)  524288
core file size      (512-blocks, -c)  unlimited
max memory size         (kbytes, -m)  unlimited
locked memory           (kbytes, -l)  unlimited
max user processes              (-u)  89999
open files                      (-n)  1024
virtual mem size        (kbytes, -v)  unlimited
swap limit              (kbytes, -w)  unlimited
socket buffer size       (bytes, -b)  unlimited
pseudo-terminals                (-p)  unlimited
kqueues                         (-k)  unlimited
umtx shared locks               (-o)  unlimited
--End resource limits--
=======================<phase: check-sanity   >============================
===>  License GPLv2+ accepted by the user
===========================================================================
=======================<phase: pkg-depends    >============================
===>   qbox-1.73.3 depends on file: /usr/local/sbin/pkg - not found
===>   Installing existing package /packages/All/pkg-1.17.5.pkg
[main-amd64-default-job-11] Installing pkg-1.17.5...
[main-amd64-default-job-11] Extracting pkg-1.17.5: .......... done
===>   qbox-1.73.3 depends on file: /usr/local/sbin/pkg - found
===>   Returning to build of qbox-1.73.3
===========================================================================
=======================<phase: fetch-depends  >============================
===========================================================================
=======================<phase: fetch          >============================
===>  License GPLv2+ accepted by the user
===> Fetching all distfiles required by qbox-1.73.3 for building
===========================================================================
=======================<phase: checksum       >============================
===>  License GPLv2+ accepted by the user
===> Fetching all distfiles required by qbox-1.73.3 for building
=> SHA256 Checksum OK for qboxcode-qbox-public-rel1_73_3_GH0.tar.gz.
===========================================================================
=======================<phase: extract-depends>============================
===========================================================================
=======================<phase: extract        >============================
===>  License GPLv2+ accepted by the user
===> Fetching all distfiles required by qbox-1.73.3 for building
===>  Extracting for qbox-1.73.3
=> SHA256 Checksum OK for qboxcode-qbox-public-rel1_73_3_GH0.tar.gz.
===========================================================================
=======================<phase: patch-depends  >============================
===========================================================================
=======================<phase: patch          >============================
===>  Patching for qbox-1.73.3
===>  Applying FreeBSD patches for qbox-1.73.3 from /usr/ports/science/qbox/files
===========================================================================
=======================<phase: build-depends  >============================
===>   qbox-1.73.3 depends on package: gmake>=4.3 - not found
===>   Installing existing package /packages/All/gmake-4.3_2.pkg
[main-amd64-default-job-11] Installing gmake-4.3_2...
[main-amd64-default-job-11] `-- Installing gettext-runtime-0.21...
[main-amd64-default-job-11] |   `-- Installing indexinfo-0.3.1...
[main-amd64-default-job-11] |   `-- Extracting indexinfo-0.3.1: .... done
[main-amd64-default-job-11] `-- Extracting gettext-runtime-0.21: .......... done
[main-amd64-default-job-11] Extracting gmake-4.3_2: .......... done
<snip>


This package installs symlinks to support root certificates discovery by
default for software that uses OpenSSL.

This enables SSL Certificate Verification by client software without manual
intervention.

If you prefer to do this manually, replace the following symlinks with
either an empty file or your site-local certificate bundle.

  * /etc/ssl/cert.pem
  * /usr/local/etc/ssl/cert.pem
  * /usr/local/openssl/cert.pem
===>   qbox-1.73.3 depends on shared library: libcurl.so - found (/usr/local/lib/libcurl.so)
===>   Returning to build of qbox-1.73.3
===>   qbox-1.73.3 depends on shared library: libfftw3.so - not found
===>   Installing existing package /packages/All/fftw3-3.3.9_1.pkg
[main-amd64-default-job-11] Installing fftw3-3.3.9_1...
[main-amd64-default-job-11] Extracting fftw3-3.3.9_1: .......... done
===>   qbox-1.73.3 depends on shared library: libfftw3.so - found (/usr/local/lib/libfftw3.so)
===>   Returning to build of qbox-1.73.3
===>   qbox-1.73.3 depends on shared library: liblapack.so - not found
===>   Installing existing package /packages/All/lapack-3.10.0_1.pkg
[main-amd64-default-job-11] Installing lapack-3.10.0_1...
[main-amd64-default-job-11] Extracting lapack-3.10.0_1: .......... done
===>   qbox-1.73.3 depends on shared library: liblapack.so - found (/usr/local/lib/liblapack.so)
===>   Returning to build of qbox-1.73.3
===>   qbox-1.73.3 depends on shared library: libmpich.so - not found
===>   Installing existing package /packages/All/mpich-3.4.2_4.pkg
[main-amd64-default-job-11] Installing mpich-3.4.2_4...
[main-amd64-default-job-11] `-- Installing bash-5.1.8...
[main-amd64-default-job-11] |   `-- Installing readline-8.1.1...
[main-amd64-default-job-11] |   `-- Extracting readline-8.1.1: .......... done
[main-amd64-default-job-11] `-- Extracting bash-5.1.8: .......... done
[main-amd64-default-job-11] `-- Installing hwloc2-2.5.0...
[main-amd64-default-job-11] |   `-- Installing level-zero-1.6.2...
[main-amd64-default-job-11] |   `-- Extracting level-zero-1.6.2: .......... done
[main-amd64-default-job-11] |   `-- Installing libpciaccess-0.16...
[main-amd64-default-job-11] |   | `-- Installing pciids-20211028...
[main-amd64-default-job-11] |   | `-- Extracting pciids-20211028: ..... done
[main-amd64-default-job-11] |   `-- Extracting libpciaccess-0.16: ......... done
[main-amd64-default-job-11] |   `-- Installing libxml2-2.9.12...
[main-amd64-default-job-11] |   `-- Extracting libxml2-2.9.12: .......... done
[main-amd64-default-job-11] `-- Extracting hwloc2-2.5.0: .......... done
[main-amd64-default-job-11] `-- Installing json-c-0.15_1...
[main-amd64-default-job-11] `-- Extracting json-c-0.15_1: .......... done
[main-amd64-default-job-11] `-- Installing libepoll-shim-0.0.20210418...
[main-amd64-default-job-11] `-- Extracting libepoll-shim-0.0.20210418: .......... done
[main-amd64-default-job-11] `-- Installing libfabric-1.13.2...
[main-amd64-default-job-11] `-- Extracting libfabric-1.13.2: .......... done
[main-amd64-default-job-11] `-- Installing perl5-5.32.1_1...
[main-amd64-default-job-11] `-- Extracting perl5-5.32.1_1: .......... done
[main-amd64-default-job-11] `-- Installing slurm-wlm-20.02.7...
[main-amd64-default-job-11] |   `-- Installing hdf-szip-2.1.1...
[main-amd64-default-job-11] |   `-- Extracting hdf-szip-2.1.1: .......... done
[main-amd64-default-job-11] |   `-- Installing hdf5-1.10.6,1...
[main-amd64-default-job-11] |   `-- Extracting hdf5-1.10.6,1: .......... done
[main-amd64-default-job-11] |   `-- Installing liblz4-1.9.3,1...
[main-amd64-default-job-11] |   `-- Extracting liblz4-1.9.3,1: .......... done
[main-amd64-default-job-11] |   `-- Installing libsysinfo-0.0.3_2...
[main-amd64-default-job-11] |   `-- Extracting libsysinfo-0.0.3_2: ......... done
[main-amd64-default-job-11] |   `-- Installing lua52-5.2.4...
[main-amd64-default-job-11] |   | `-- Installing libedit-3.1.20210216,1...
[main-amd64-default-job-11] |   | `-- Extracting libedit-3.1.20210216,1: .......... done
[main-amd64-default-job-11] |   `-- Extracting lua52-5.2.4: ......... done
[main-amd64-default-job-11] |   `-- Installing munge-0.5.14_1...
[main-amd64-default-job-11] |   `-- Extracting munge-0.5.14_1: ......... done
===> Creating groups.
Creating group 'slurm' with gid '468'.
===> Creating users
Creating user 'slurm' with uid '468'.
[main-amd64-default-job-11] `-- Extracting slurm-wlm-20.02.7: .......... done
[main-amd64-default-job-11] Extracting mpich-3.4.2_4: .......... done
=====
Message from mpich-3.4.2_4:

--
===>   NOTICE:

The mpich port currently does not have a maintainer. As a result, it is
more likely to have unresolved issues, not be up-to-date, or even be removed in
the future. To volunteer to maintain this port, please create an issue at:

https://bugs.freebsd.org/bugzilla

More information about port maintainership is available at:

https://docs.freebsd.org/en/articles/contributing/#ports-contributing
===>   qbox-1.73.3 depends on shared library: libmpich.so - found (/usr/local/lib/libmpich.so)
===>   Returning to build of qbox-1.73.3
===>   qbox-1.73.3 depends on shared library: libscalapack.so - not found
===>   Installing existing package /packages/All/scalapack-2.1.0.pkg
[main-amd64-default-job-11] Installing scalapack-2.1.0...
[main-amd64-default-job-11] `-- Installing openblas-0.3.18,1...
[main-amd64-default-job-11] `-- Extracting openblas-0.3.18,1: .......... done
[main-amd64-default-job-11] Extracting scalapack-2.1.0: .......... done
=====
Message from scalapack-2.1.0:

--
Please test your scalapack installation
 Example programs are located at /usr/local/share/examples/SCALAPACK

 Test programs are located at /usr/local/share/SCALAPACK/TESTING

 Example:
  % cd /usr/local/share/SCALAPACK/TESTING
  % /usr/local/bin/mpirun -np 4 ./xcbrd
  % /usr/local/bin/mpirun -np 4 ./xcdblu
   etc., etc. ...

  to perform all the tests,
  % cd /usr/local/share/SCALAPACK/TESTING
  % csh
  % foreach i (x*)
  ? /usr/local/bin/mpirun -np 4 ./$i >& ~/$i.log
  ? end
  % /usr/local/bin/mpdallexit

 If you're using OpenMPI, use this instead:
  % cd /usr/local/share/SCALAPACK/TESTING
  % LD_LIBRARY_PATH=/usr/local/mpi/openmpi/lib/ export LD_LIBRARY_PATH
  % PATH=$PATH:/usr/local/mpi/openmpi/bin/ export PATH
  % mpirun -np 4 ./xcbrd
  % mpirun -np 4 ./xcdblu
   etc., etc. ...

You can change -np 4 to any number to meet your environment.
See files at /usr/local/share/doc/scalapack for detail.
--
===>   NOTICE:

The scalapack port currently does not have a maintainer. As a result, it is
more likely to have unresolved issues, not be up-to-date, or even be removed in
the future. To volunteer to maintain this port, please create an issue at:

https://bugs.freebsd.org/bugzilla

More information about port maintainership is available at:

https://docs.freebsd.org/en/articles/contributing/#ports-contributing
===>   qbox-1.73.3 depends on shared library: libscalapack.so - found (/usr/local/lib/libscalapack.so)
===>   Returning to build of qbox-1.73.3
===>   qbox-1.73.3 depends on shared library: libuuid.so - not found
===>   Installing existing package /packages/All/e2fsprogs-libuuid-1.46.4.pkg
[main-amd64-default-job-11] Installing e2fsprogs-libuuid-1.46.4...
[main-amd64-default-job-11] Extracting e2fsprogs-libuuid-1.46.4: .......... done
===>   qbox-1.73.3 depends on shared library: libuuid.so - found (/usr/local/lib/libuuid.so)
===>   Returning to build of qbox-1.73.3
===>   qbox-1.73.3 depends on shared library: libxerces-c.so - not found
===>   Installing existing package /packages/All/xerces-c3-3.2.3.pkg
[main-amd64-default-job-11] Installing xerces-c3-3.2.3...
[main-amd64-default-job-11] Extracting xerces-c3-3.2.3: .......... done
===>   qbox-1.73.3 depends on shared library: libxerces-c.so - found (/usr/local/lib/libxerces-c.so)
===>   Returning to build of qbox-1.73.3
===>   qbox-1.73.3 depends on shared library: libiconv.so - not found
===>   Installing existing package /packages/All/libiconv-1.16.pkg
[main-amd64-default-job-11] Installing libiconv-1.16...
[main-amd64-default-job-11] Extracting libiconv-1.16: .......... done
===>   qbox-1.73.3 depends on shared library: libiconv.so - found (/usr/local/lib/libiconv.so)
===>   Returning to build of qbox-1.73.3
===========================================================================
=======================<phase: configure      >============================
===>  Configuring for qbox-1.73.3
===========================================================================
=======================<phase: build          >============================
===>  Building for qbox-1.73.3
gmake[1]: Entering directory '/wrkdirs/usr/ports/science/qbox/work/qbox-public-rel1_73_3/src'
c++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing  -isystem /usr/local/include  -Wunused -DFreeBSD -I -DIA32 -DUSE_MPI -DUSE_FFTW3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DADD_ -DAPP_NO_THREADS -DXML_USE_NO_THREADS -DUSE_XERCES -DXERCESC_3 -DSCALAPACK -DUSE_UUID  -DTARGET='"freebsd"' -DVERSION='""' -isystem /usr/local/include  -c -o MPIdata.o MPIdata.cpp
c++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing  -isystem /usr/local/include  -Wunused -DFreeBSD -I -DIA32 -DUSE_MPI -DUSE_FFTW3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DADD_ -DAPP_NO_THREADS -DXML_USE_NO_THREADS -DUSE_XERCES -DXERCESC_3 -DSCALAPACK -DUSE_UUID  -DTARGET='"freebsd"' -DVERSION='""' -isystem /usr/local/include  -c -o qb.o qb.cpp
c++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing  -isystem /usr/local/include  -Wunused -DFreeBSD -I -DIA32 -DUSE_MPI -DUSE_FFTW3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DADD_ -DAPP_NO_THREADS -DXML_USE_NO_THREADS -DUSE_XERCES -DXERCESC_3 -DSCALAPACK -DUSE_UUID  -DTARGET='"freebsd"' -DVERSION='""' -isystem /usr/local/include  -c -o AtomSet.o AtomSet.cpp
In file included from qb.cpp:80:
./BisectionCmd.h:143:21: error: reference to 'bitset' is ambiguous
                 << bitset<30>(localization[i])
                    ^
/usr/include/sys/_bitset.h:64:15: note: candidate found by name lookup is 'bitset'
BITSET_DEFINE(bitset, 1);
              ^
/usr/include/c++/v1/bitset:667:28: note: candidate found by name lookup is 'std::bitset'
class _LIBCPP_TEMPLATE_VIS bitset
                           ^
In file included from qb.cpp:77:
./StatusCmd.h:32:7: warning: private field 'niter' is not used [-Wunused-private-field]
  int niter, nfi;
      ^
./StatusCmd.h:32:14: warning: private field 'nfi' is not used [-Wunused-private-field]
  int niter, nfi;
             ^
2 warnings and 1 error generated.
gmake[1]: *** [<builtin>: qb.o] Error 1
gmake[1]: *** Waiting for unfinished jobs....
gmake[1]: Leaving directory '/wrkdirs/usr/ports/science/qbox/work/qbox-public-rel1_73_3/src'
===> Compilation failed unexpectedly.
Try to set MAKE_JOBS_UNSAFE=yes and rebuild before reporting the failure to
the maintainer.
*** Error code 1

Stop.
make: stopped in /usr/ports/science/qbox



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