Date: Sun, 28 Jan 2018 18:43:02 GMT From: pkg-fallout@FreeBSD.org To: pkg-fallout@FreeBSD.org Subject: [package - 111arm64-quarterly][biology/molden] Failed for molden-5.7_13, 1 in build Message-ID: <201801281843.w0SIh2Hm021174@thunderx1.nyi.freebsd.org>
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You are receiving this mail as a port that you maintain is failing to build on the FreeBSD package build server. Please investigate the failure and submit a PR to fix build. Maintainer: jmd@FreeBSD.org Last committer: jmd@FreeBSD.org Ident: $FreeBSD: branches/2018Q1/biology/molden/Makefile 455691 2017-12-07 02:34:36Z jmd $ Log URL: http://thunderx1.nyi.freebsd.org/data/111arm64-quarterly/460130/logs/molden-5.7_13,1.log Build URL: http://thunderx1.nyi.freebsd.org/build.html?mastername=111arm64-quarterly&build=460130 Log: =>> Building biology/molden build started at Sun Jan 28 18:36:36 UTC 2018 port directory: /usr/ports/biology/molden package name: molden-5.7_13,1 building for: FreeBSD 111arm64-quarterly-job-13 11.1-RELEASE-p6 FreeBSD 11.1-RELEASE-p6 1101001 arm64 maintained by: jmd@FreeBSD.org Makefile ident: $FreeBSD: branches/2018Q1/biology/molden/Makefile 455691 2017-12-07 02:34:36Z jmd $ Poudriere version: 3.2.4-20-g3ab5fc55 Host OSVERSION: 1200054 Jail OSVERSION: 1101001 Job Id: 13 ---Begin Environment--- SHELL=/bin/csh OSVERSION=1101001 UNAME_v=FreeBSD 11.1-RELEASE-p6 1101001 UNAME_r=11.1-RELEASE-p6 BLOCKSIZE=K MAIL=/var/mail/root STATUS=1 SAVED_TERM= MASTERMNT=/usr/local/poudriere/data/.m/111arm64-quarterly/ref PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin POUDRIERE_BUILD_TYPE=bulk OLDPWD=/usr/local/poudriere/data/.m/111arm64-quarterly/ref/.p P_PORTS_FEATURES=FLAVORS SELECTED_OPTIONS PWD=/usr/local/poudriere/data/.m/111arm64-quarterly/ref/.p/pool MASTERNAME=111arm64-quarterly SCRIPTPREFIX=/usr/local/share/poudriere USER=root HOME=/root P_PYTHON_MAJOR_VER=2 POUDRIERE_VERSION=3.2.4-20-g3ab5fc55 SCRIPTPATH=/usr/local/share/poudriere/bulk.sh LIBEXECPREFIX=/usr/local/libexec/poudriere LOCALBASE=/usr/local PACKAGE_BUILDING=yes POUDRIEREPATH=/usr/local/bin/poudriere ---End Environment--- ---Begin Poudriere Port Flags/Env--- PORT_FLAGS= PKGENV= FLAVOR= DEPENDS_ARGS= MAKE_ARGS= ---End Poudriere Port Flags/Env--- ---Begin OPTIONS List--- ===> The following configuration options are available for molden-5.7_13,1: DATA=on: Install data files DOCS=on: Build and/or install documentation ===> Use 'make config' to modify these settings ---End OPTIONS List--- --MAINTAINER-- jmd@FreeBSD.org --End MAINTAINER-- --CONFIGURE_ARGS-- --End CONFIGURE_ARGS-- --CONFIGURE_ENV-- F77="gfortran6" FC="gfortran6" FFLAGS="-O -Wl,-rpath=/usr/local/lib/gcc6" FCFLAGS="-Wl,-rpath=/usr/local/lib/gcc6" MAKE=gmake XDG_DATA_HOME=/wrkdirs/usr/ports/biology/molden/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/molden/work HOME=/wrkdirs/usr/ports/biology/molden/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/molden/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin SHELL=/bin/sh CONFIG_SHELL=/bin/sh --End CONFIGURE_ENV-- --MAKE_ENV-- F77="gfortran6" FC="gfortran6" FFLAGS="-O -Wl,-rpath=/usr/local/lib/gcc6" FCFLAGS="-Wl,-rpath=/usr/local/lib/gcc6" XDG_DATA_HOME=/wrkdirs/usr/ports/biology/molden/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/molden/work HOME=/wrkdirs/usr/ports/biology/molden/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/molden/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin NO_PIE=yes MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES ADDR2LINE="/usr/local/bin/addr2line" AR="/usr/local/bin/ar" AS="/usr/local/bin/as" CPPFILT="/usr/local/bin/c++filt" GPROF="/usr/local/bin/gprof" LD="/usr/local/bin/ld" NM="/usr/local/bin/nm" OBJCOPY="/usr/local/bin/objcopy" OBJDUMP="/usr/local/bin/objdump" RANLIB="/usr/local/bin/ranlib" READELF="/usr/local/bin/readelf" SIZE="/usr/local/bin/size" STRINGS="/usr/local/bin/strings" PREFIX=/usr/local LOCALBASE=/usr/local LIBDIR="/usr/lib" CC="cc" CFLAGS="-O2 -pipe -DFREEBSD -DDOBACK -DHASTIMER -DCOLOR_OFFSET=0.0 -I /usr/local/include -Wno-return-type -fno-strict-aliasing" CPP="cpp" CPPFLAGS="" LDFLAGS=" -Wl,-rpath=/usr/local/lib/gcc6 -L/usr/local/lib/gcc6 -B/usr/local/bin" LIBS="" CXX="c++" CXXFLAGS="-O2 -pipe -DFREEBSD -DDOBACK -DHASTIMER -DCOLOR_OFFSET=0.0 -I/usr/local/include -Wno-return-type -fno-strict-aliasing " MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" --End MAKE_ENV-- --PLIST_SUB-- OSREL=11.1 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local PORTDOCS="" PORTEXAMPLES="" LIB32DIR=lib DOCSDIR="share/doc/molden" EXAMPLESDIR="share/examples/molden" DATADIR="share/molden" WWWDIR="www/molden" ETCDIR="etc/molden" --End PLIST_SUB-- --SUB_LIST-- PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/molden DOCSDIR=/usr/local/share/doc/molden EXAMPLESDIR=/usr/local/share/examples/molden WWWDIR=/usr/local/www/molden ETCDIR=/usr/local/etc/molden --End SUB_LIST-- ---Begin make.conf--- USE_PACKAGE_DEPENDS=yes BATCH=yes WRKDIRPREFIX=/wrkdirs PORTSDIR=/usr/ports PACKAGES=/packages DISTDIR=/distfiles PACKAGE_BUILDING=yes PACKAGE_BUILDING_FLAVORS=yes #### /usr/local/etc/poudriere.d/make.conf #### # XXX: We really need this but cannot use it while 'make checksum' does not # try the next mirror on checksum failure. It currently retries the same # failed mirror and then fails rather then trying another. It *does* # try the next if the size is mismatched though. #MASTER_SITE_FREEBSD=yes # Build ALLOW_MAKE_JOBS_PACKAGES with 2 jobs MAKE_JOBS_NUMBER=2 #### /usr/ports/Mk/Scripts/ports_env.sh #### ARCH=aarch64 CONFIGURE_MAX_CMD_LEN=262144 OPSYS=FreeBSD OSREL=11.1 OSVERSION=1101001 PYTHONBASE=/usr/local UID=0 _OSRELEASE=11.1-RELEASE-p6 #### Misc Poudriere #### GID=0 DISABLE_MAKE_JOBS=poudriere ---End make.conf--- --Resource limits-- cpu time (seconds, -t) unlimited file size (512-blocks, -f) unlimited data seg size (kbytes, -d) 1048576 stack size (kbytes, -s) 1048576 core file size (512-blocks, -c) unlimited max memory size (kbytes, -m) unlimited locked memory (kbytes, -l) unlimited max user processes (-u) 89999 open files (-n) 1024 virtual mem size (kbytes, -v) unlimited swap limit (kbytes, -w) unlimited socket buffer size (bytes, -b) unlimited pseudo-terminals (-p) unlimited kqueues (-k) unlimited umtx shared locks (-o) unlimited --End resource limits-- =======================<phase: check-sanity >============================ ===> License Molden accepted by the user =========================================================================== =======================<phase: pkg-depends >============================ ===> molden-5.7_13,1 depends on file: /usr/local/sbin/pkg - not found ===> Installing existing package /packages/All/pkg-1.10.3_1.txz [111arm64-quarterly-job-13] Installing pkg-1.10.3_1... [111arm64-quarterly-job-13] Extracting pkg-1.10.3_1: .......... done ===> molden-5.7_13,1 depends on file: /usr/local/sbin/pkg - found ===> Returning to build of molden-5.7_13,1 =========================================================================== =======================<phase: fetch-depends >============================ =========================================================================== =======================<phase: fetch >============================ ===> License Molden accepted by the user => molden5.7.tar.gz doesn't seem to exist in /portdistfiles/. => Attempting to fetch ftp://ftp.cmbi.ru.nl/pub/molgraph/molden/molden5.7.tar.gz molden5.7.tar.gz 0 B 0 Bps ===> Fetching all distfiles required by molden-5.7_13,1 for building =========================================================================== =======================<phase: checksum >============================ ===> License Molden accepted by the user ===> Fetching all distfiles required by molden-5.7_13,1 for building => SHA256 Checksum OK for molden5.7.tar.gz. =========================================================================== =======================<phase: extract-depends>============================ =========================================================================== =======================<phase: extract >============================ ===> License Molden accepted by the user ===> Fetching all distfiles required by molden-5.7_13,1 for building ===> Extracting for molden-5.7_13,1 => SHA256 Checksum OK for molden5.7.tar.gz. =========================================================================== =======================<phase: patch-depends >============================ =========================================================================== =======================<phase: patch >============================ ===> Patching for molden-5.7_13,1 ===> Applying FreeBSD patches for molden-5.7_13,1 =========================================================================== =======================<phase: build-depends >============================ ===> molden-5.7_13,1 depends on executable: gfortran6 - not found ===> Installing existing package /packages/All/gcc6-6.4.0_3.txz [111arm64-quarterly-job-13] Installing gcc6-6.4.0_3... [111arm64-quarterly-job-13] `-- Installing binutils-2.28,1... [111arm64-quarterly-job-13] | `-- Installing gettext-runtime-0.19.8.1_1... [111arm64-quarterly-job-13] | | `-- Installing indexinfo-0.3.1... [111arm64-quarterly-job-13] | | `-- Extracting indexinfo-0.3.1: .... done [111arm64-quarterly-job-13] | `-- Extracting gettext-runtime-0.19.8.1_1: .......... done [111arm64-quarterly-job-13] `-- Extracting binutils-2.28,1: .......... done [111arm64-quarterly-job-13] `-- Installing gmp-6.1.2... [111arm64-quarterly-job-13] `-- Extracting gmp-6.1.2: .......... done [111arm64-quarterly-job-13] `-- Installing mpc-1.0.3... [111arm64-quarterly-job-13] | `-- Installing mpfr-3.1.6... [111arm64-quarterly-job-13] | `-- Extracting mpfr-3.1.6: .......... done [111arm64-quarterly-job-13] `-- Extracting mpc-1.0.3: ...... done [111arm64-quarterly-job-13] Extracting gcc6-6.4.0_3: .......... done Message from gcc6-6.4.0_3: To ensure binaries built with this toolchain find appropriate versions of the necessary run-time libraries, you may want to link using -Wl,-rpath=/usr/local/lib/gcc6 For ports leveraging USE_GCC, USES=compiler, or USES=fortran this happens transparently. ===> molden-5.7_13,1 depends on executable: gfortran6 - found ===> Returning to build of molden-5.7_13,1 ===> molden-5.7_13,1 depends on executable: gmake - not found ===> Installing existing package /packages/All/gmake-4.2.1_1.txz [111arm64-quarterly-job-13] Installing gmake-4.2.1_1... [111arm64-quarterly-job-13] Extracting gmake-4.2.1_1: .......... done ===> molden-5.7_13,1 depends on executable: gmake - found ===> Returning to build of molden-5.7_13,1 <snip> tessel_cases.c:190:9: warning: implicit declaration of function 'gen_case_III' is invalid in C99 [-Wimplicit-function-declaration] gen_case_III(atom_id, face_id, cons); ^ tessel_cases.c:192:9: warning: implicit declaration of function 'gen_case_IV' is invalid in C99 [-Wimplicit-function-declaration] gen_case_IV(atom_id, face_id, cons); ^ tessel_cases.c:206:1: warning: type specifier missing, defaults to 'int' [-Wimplicit-int] gen_case_III(atom_id, face_id, cons) ^ tessel_cases.c:234:3: warning: implicit declaration of function 'compute_transf_mat_III' is invalid in C99 [-Wimplicit-function-declaration] compute_transf_mat_III(half_space, inv_transf, cir_center, cir_radius); ^ tessel_cases.c:241:3: warning: implicit declaration of function 'gen_patches_III' is invalid in C99 [-Wimplicit-function-declaration] gen_patches_III(face_atoms, comp_verts,n+1,cir_center, cir_radius, ^ tessel_cases.c:251:1: warning: type specifier missing, defaults to 'int' [-Wimplicit-int] gen_case_IV(atom_id, face_id, cons) ^ tessel_cases.c:275:3: warning: implicit declaration of function 'gen_patches_IV' is invalid in C99 [-Wimplicit-function-declaration] gen_patches_IV(atom_id, comp_verts, n); ^ tessel_cases.c:286:1: warning: type specifier missing, defaults to 'int' [-Wimplicit-int] compute_transf_mat_I_II(pt0, pt1, inv_transf,center,radius, acute) ^ tessel_cases.c:332:1: warning: type specifier missing, defaults to 'int' [-Wimplicit-int] compute_transf_mat_III(constraint, inv_transf, center, radius) ^ tessel_cases.c:521:1: warning: type specifier missing, defaults to 'int' [-Wimplicit-int] find_concave_center(face_atoms, k, probe_pos, concave_center) ^ 15 warnings generated. cc -O2 -pipe -DFREEBSD -DDOBACK -DHASTIMER -DCOLOR_OFFSET=0.0 -I/usr/local/include -Wno-return-type -fno-strict-aliasing -c tessel_patches.c tessel_patches.c:14:1: warning: type specifier missing, defaults to 'int' [-Wimplicit-int] gen_patches_I_II(face_atoms, comp_verts, num_verts, concave_center, cir_radius, inv_transf, ^ tessel_patches.c:45:5: warning: implicit declaration of function 'find_sphere_points' is invalid in C99 [-Wimplicit-function-declaration] find_sphere_points(sph_pts, j, comp_verts[j], atom_ptr[0]); ^ tessel_patches.c:88:3: warning: implicit declaration of function 'find_torus_points' is invalid in C99 [-Wimplicit-function-declaration] find_torus_points(tor_pts, cusp_pts, num_tor_verts, atom_ptr, ^ tessel_patches.c:98:16: warning: implicit declaration of function 'find_order' is invalid in C99 [-Wimplicit-function-declaration] flip_verts = find_order(comp_verts, num_verts, face_atoms); ^ tessel_patches.c:100:3: warning: implicit declaration of function 'gen_torus' is invalid in C99 [-Wimplicit-function-declaration] gen_torus(tor_pts, probe_centers, num_tor_verts, flip_verts, Probe_radius, torus_cusp); ^ tessel_patches.c:105:3: warning: implicit declaration of function 'gen_convex' is invalid in C99 [-Wimplicit-function-declaration] gen_convex(comp_verts + 1, &sph_pts[1], probe_centers, tor_pts[0], num_verts-2, ^ tessel_patches.c:110:3: warning: implicit declaration of function 'gen_concave' is invalid in C99 [-Wimplicit-function-declaration] gen_concave(tor_pts, concave_center, flip_verts, cusp_pts, ^ tessel_patches.c:124:1: warning: type specifier missing, defaults to 'int' [-Wimplicit-int] gen_patches_III(face_atoms, comp_verts, num_verts, cir_center, cir_radius, ^ tessel_patches.c:220:1: warning: type specifier missing, defaults to 'int' [-Wimplicit-int] gen_patches_IV(atom_id, comp_verts, num_verts) ^ tessel_patches.c:249:5: warning: implicit declaration of function 'gen_arc_recurse' is invalid in C99 [-Wimplicit-function-declaration] gen_arc_recurse(&comp_sph_pts[j], &comp_sph_pts[i], sp_points,&k,atom_id, 1); ^ tessel_patches.c:286:7: warning: implicit declaration of function 'new_gen_sphere_tris' is invalid in C99 [-Wimplicit-function-declaration] new_gen_sphere_tris(&sp_points[i+1], &sp_points[i], ¢er, atom_id); ^ tessel_patches.c:300:1: warning: type specifier missing, defaults to 'int' [-Wimplicit-int] gen_arc_recurse(bp0, bp1, sp_points, j, atom_id, convex) ^ tessel_patches.c:312:5: warning: implicit declaration of function 'find_mid_pt' is invalid in C99 [-Wimplicit-function-declaration] find_mid_pt(&new_bp, bp0, bp1, atom_id); ^ tessel_patches.c:327:1: warning: type specifier missing, defaults to 'int' [-Wimplicit-int] find_sphere_points(sph_pts, j, comp_vert, atom_ptr) ^ tessel_patches.c:342:3: warning: implicit declaration of function 'find_ray_sphere_int' is invalid in C99 [-Wimplicit-function-declaration] find_ray_sphere_int(sph_pts[j].Coord,tempv,ray_dir,atom_ptr->center,ext_rad); ^ tessel_patches.c:360:1: warning: type specifier missing, defaults to 'int' [-Wimplicit-int] find_torus_points(tor_pts, mid_cusp_pts, num_pts, atom_ptr, probe_centers, ^ 16 warnings generated. cc -O2 -pipe -DFREEBSD -DDOBACK -DHASTIMER -DCOLOR_OFFSET=0.0 -I/usr/local/include -Wno-return-type -fno-strict-aliasing -c tessel_convex.c tessel_convex.c:67:3: warning: implicit declaration of function 'initialize_r' is invalid in C99 [-Wimplicit-function-declaration] initialize_r(big_p, sph_side, q, num_p, &num_sph_side, num_q, same_order, atom_id, full_torus); ^ tessel_convex.c:82:5: warning: implicit declaration of function 'get_full_torus_mesh' is invalid in C99 [-Wimplicit-function-declaration] get_full_torus_mesh(sph_side, num_sph_side, torus_side, num_q, ^ tessel_convex.c:85:5: warning: implicit declaration of function 'get_partial_torus_mesh' is invalid in C99 [-Wimplicit-function-declaration] get_partial_torus_mesh(sph_side, num_sph_side, torus_side, num_q, ^ tessel_convex.c:97:1: warning: type specifier missing, defaults to 'int' [-Wimplicit-int] initialize_r(big_p, r, q, num_p, num_r, num_q, same_order, atom_id, full_torus) ^ tessel_convex.c:112:7: warning: implicit declaration of function 'gen_arc_recurse' is invalid in C99 [-Wimplicit-function-declaration] gen_arc_recurse(&big_p[i], &big_p[i+1], r, &j, atom_id, 1); ^ tessel_convex.c:130:5: warning: implicit declaration of function 'find_plane_eq' is invalid in C99 [-Wimplicit-function-declaration] find_plane_eq(q[0].Coord, q[1].Coord, q[2].Coord, plane_eq); ^ tessel_convex.c:166:1: warning: type specifier missing, defaults to 'int' [-Wimplicit-int] gen_linear_recurse(p0, p1, r, j, center, radius, convex) ^ tessel_convex.c:202:1: warning: type specifier missing, defaults to 'int' [-Wimplicit-int] gen_flipped_sphere_tris(p0, p1, p2, atom_id, flip) ^ tessel_convex.c:208:5: warning: implicit declaration of function 'new_gen_sphere_tris' is invalid in C99 [-Wimplicit-function-declaration] new_gen_sphere_tris(p0, p1, p2, atom_id); ^ tessel_convex.c:217:1: warning: type specifier missing, defaults to 'int' [-Wimplicit-int] new_gen_sphere_tris(bp0, bp1, bp2, atom_id) ^ tessel_convex.c:238:7: warning: implicit declaration of function 'multi_gen_spherical_recurse' is invalid in C99 [-Wimplicit-function-declaration] multi_gen_spherical_recurse(bp0, bp1, &mid_pt, atom_id); ^ tessel_convex.c:252:1: warning: type specifier missing, defaults to 'int' [-Wimplicit-int] multi_gen_spherical_recurse(pt0, pt1, pt2, atom_id) ^ tessel_convex.c:275:5: warning: implicit declaration of function 'gen_tris' is invalid in C99 [-Wimplicit-function-declaration] gen_tris(&(tri_pt[0]->vt), &(tri_pt[1]->vt), &(tri_pt[2]->vt)); ^ tessel_convex.c:278:30: warning: implicit declaration of function 'find_mid_pt' is invalid in C99 [-Wimplicit-function-declaration] { if(valid_point&flags[0]) find_mid_pt(&mid_pt[0],tri_pt[0],tri_pt[1],atom_id); ^ tessel_convex.c:314:1: warning: type specifier missing, defaults to 'int' [-Wimplicit-int] find_mid_pt(mid_pt, tri_pt0, tri_pt1, atom_id) ^ tessel_convex.c:359:1: warning: type specifier missing, defaults to 'int' [-Wimplicit-int] gen_tris(pt0, pt1, pt2) ^ tessel_convex.c:362:4: warning: implicit declaration of function 'add_tri' is invalid in C99 [-Wimplicit-function-declaration] add_tri(pt0, pt1, pt2, Current_atom); ^ tessel_convex.c:369:1: warning: type specifier missing, defaults to 'int' [-Wimplicit-int] add_tri(pt0, pt1, pt2, atype) ^ tessel_convex.c:376:5: warning: implicit declaration of function 'write_archive_tri' is invalid in C99 [-Wimplicit-function-declaration] write_archive_tri(pt0, pt1, pt2, atype); ^ 19 warnings generated. cc -O2 -pipe -DFREEBSD -DDOBACK -DHASTIMER -DCOLOR_OFFSET=0.0 -I/usr/local/include -Wno-return-type -fno-strict-aliasing -c tessel_concave.c tessel_concave.c:22:1: warning: type specifier missing, defaults to 'int' [-Wimplicit-int] gen_concave(tor_pts, center, flip_verts, cusp_pts, probe, n, cur_torus, torus_cusp) ^ tessel_concave.c:55:5: warning: implicit declaration of function 'gen_concave_tri' is invalid in C99 [-Wimplicit-function-declaration] { gen_concave_tri(tor_pts[0][0],tor_pts[1][0],center[0], flip_verts, probe[0], ^ tessel_concave.c:89:1: warning: type specifier missing, defaults to 'int' [-Wimplicit-int] gen_concave_tri(point0, point1, point2, flip, center, radius) ^ tessel_concave.c:101:5: warning: implicit declaration of function 'gen_sphere_tris' is invalid in C99 [-Wimplicit-function-declaration] gen_sphere_tris(&point2, &point1, &point0, fcenter, radius, 0); ^ tessel_concave.c:131:5: warning: implicit declaration of function 'gen_cuspy_sphere_tris' is invalid in C99 [-Wimplicit-function-declaration] gen_cuspy_sphere_tris(point2, point1, point0, fcenter, radius, plane_eq); ^ tessel_concave.c:143:1: warning: type specifier missing, defaults to 'int' [-Wimplicit-int] gen_cuspy_sphere_tris(pt0, pt1, pt2, center, radius, plane_eq) ^ tessel_concave.c:208:7: warning: implicit declaration of function 'gen_tris' is invalid in C99 [-Wimplicit-function-declaration] { gen_tris(points[0], points[1], points[2]); ^ tessel_concave.c:217:5: warning: implicit declaration of function 'find_line_seg_plane_int' is invalid in C99 [-Wimplicit-function-declaration] find_line_seg_plane_int(new_point1.Coord,points[i]->Coord,points[j]->Coord,plane_eq->coeff); ^ tessel_concave.c:269:1: warning: type specifier missing, defaults to 'int' [-Wimplicit-int] gen_sphere_tris(pt0, pt1, pt2, center, radius, convex) ^ 9 warnings generated. cc -O2 -pipe -DFREEBSD -DDOBACK -DHASTIMER -DCOLOR_OFFSET=0.0 -I/usr/local/include -Wno-return-type -fno-strict-aliasing -c tessel_torus.c tessel_torus.c:22:1: warning: type specifier missing, defaults to 'int' [-Wimplicit-int] get_full_torus_mesh(sph, num_sph, torus, num_torus, flip, atom_id) ^ tessel_torus.c:41:3: warning: implicit declaration of function 'find_plane_eq' is invalid in C99 [-Wimplicit-function-declaration] find_plane_eq(torus[0].vt.Coord,torus[1].vt.Coord,torus[2].vt.Coord,plane_eq); ^ tessel_torus.c:52:9: warning: implicit declaration of function 'gen_flipped_sphere_tris' is invalid in C99 [-Wimplicit-function-declaration] { gen_flipped_sphere_tris(&torus[t_index], &sph[next_s_index], &sph[s_index], atom_id, flip); ^ tessel_torus.c:106:1: warning: type specifier missing, defaults to 'int' [-Wimplicit-int] get_partial_torus_mesh(sph, num_sph, torus, num_torus, flip, atom_id) ^ tessel_torus.c:190:3: warning: implicit declaration of function 'gen_linear_recurse' is invalid in C99 [-Wimplicit-function-declaration] gen_linear_recurse(tor_pts[0][0],tor_pts[1][0],r[0],&j,fcenter,fradius,0); ^ tessel_torus.c:209:17: warning: implicit declaration of function 'gen_tris' is invalid in C99 [-Wimplicit-function-declaration] { if (flip) gen_tris(&r[l][m], &r[k][m+1], &r[k][m]); ^ 6 warnings generated. cc -O2 -pipe -DFREEBSD -DDOBACK -DHASTIMER -DCOLOR_OFFSET=0.0 -I/usr/local/include -Wno-return-type -fno-strict-aliasing surf.o io.o compute.o dual.o utils.o lp.o chull.o tessel_cases.o tessel_patches.o tessel_convex.o tessel_concave.o tessel_torus.o -o surf -lm /usr/bin/ld: Undefined symbol "stat" cc: error: linker command failed with exit code 1 (use -v to see invocation) gmake[2]: *** [Makefile:24: surf] Error 1 gmake[2]: Leaving directory '/wrkdirs/usr/ports/biology/molden/work/molden5.7/surf' gmake[1]: *** [makefile:299: surf/surf] Error 2 gmake[1]: Leaving directory '/wrkdirs/usr/ports/biology/molden/work/molden5.7' *** Error code 1 Stop. make: stopped in /usr/ports/biology/molden
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