fer-encoding; bh=A51BzbC95wIAmGdgdwwM6FxXApOhheOyTxJgv4KfAoE=; b=M0ziwyATFLBT7S6tGSPpCwFtwQYxy6Y4TPvYQis8bKwKDFz9gqgLOnN4q2ppEYFpjtZ/9o P2Bhexw4pclZ6Gn+pDbNeG/5+iwzbvWPLRI+6J+xG5/qM356fughIg6hRiiJdSpe8II+qz 2HRyuS1ZkFD42RRyNUtjUb1lNFXVwtTkPeGBHotcnTv5/nR0Zz2+Eu0jfVmfHBj4Mpx12H e9Ud1pDLFWhVPjHskXl2a5A3oYVmgwmFzoh5yxPJbn3Bv68NqAOXTh4/ASwSD8L5ERbvc1 G2AwcXUYoQeeTFMZacNpsOf8IOf6jzJ2C3m4zI/IR+fxnxErDG1myR0IZDsecQ== ARC-Message-Signature: i=1; a=rsa-sha256; c=relaxed/relaxed; d=freebsd.org; s=dkim; t=1767621429; h=from:from:reply-to:subject:subject:date:date:message-id:message-id: to:to:cc:mime-version:mime-version:content-type:content-type: content-transfer-encoding:content-transfer-encoding; bh=A51BzbC95wIAmGdgdwwM6FxXApOhheOyTxJgv4KfAoE=; b=APXtOHYBnT84GcHzzpJoynxoqgzELtPTvRbwMJivPqDUQEOEQxtgnSfMJOUy/iQUI+DKSR E/vBTEbZofCDV5Jw8BLFPOK9FAghHayZT4tMCMeTGQ7xNkLsUp/dxmXQXn5ujSTAvx07FR 50dK/0SlC67VvwGbam3hUkkcTNm1Wq718hPrtwt/eSuNoNI1grW40sgbVH5iFdSa8MQfAD XuGkJlH5P7esSHmC+WmVgW3eY6dntzQT/3wgx9OTifK72IOo4x5y1mORj0qdZ5j+9u+pya WW9f175MTrBXZuLvSyJY1VXnjHWSBpc+b9SHkfiGcAE9n02V5hdue3IikqhweA== ARC-Seal: i=1; s=dkim; d=freebsd.org; t=1767621429; a=rsa-sha256; cv=none; b=NTknXAYvQLiNWdbCizQnxHAvl/rZPZLNypOKb88pI30SYfZE77A8JTg7Yc9Z8TXlNTQRmX gumnrmDaEmMalJtMEgoGAslaL36+E9KfeRSUs3/F3QMHbiKw+jVpeX21AJdgeIVVx+6FZ5 Zjmrs+OzwvjaQyTvbC9kEcnqNdK14OKbbh541Jcedhsy0oUndz+JPgUIyBRUIhgdcr1Uiq 3Hu7YFS47vpuwpIaiA1z5vH8ETLfyK6kBFQinGP6fhCVYZhr46pY+1Jdm2x2Qri3tHumcV BUDBpzWKhQ9LczNQ5Xj9pTvDY19HWzLXZ4JLSQonNCov4snyRB4HI/pB9cKFgQ== ARC-Authentication-Results: i=1; mx1.freebsd.org; none Received: from gitrepo.freebsd.org (gitrepo.freebsd.org [IPv6:2610:1c1:1:6068::e6a:5]) by mxrelay.nyi.freebsd.org (Postfix) with ESMTP id 4dlG7m72dHz7m5 for ; Mon, 05 Jan 2026 13:57:08 +0000 (UTC) (envelope-from git@FreeBSD.org) Received: from git (uid 1279) (envelope-from git@FreeBSD.org) id 43c25 by gitrepo.freebsd.org (DragonFly Mail Agent v0.13+ on gitrepo.freebsd.org); Mon, 05 Jan 2026 13:57:08 +0000 To: ports-committers@FreeBSD.org, dev-commits-ports-all@FreeBSD.org, dev-commits-ports-main@FreeBSD.org From: Piotr Kubaj Subject: git: e503a6d6bf8f - main - biology/hyphy: fix build on amd64 / i386 List-Id: Commit messages for all branches of the ports repository List-Archive: https://lists.freebsd.org/archives/dev-commits-ports-all List-Help: List-Post: List-Subscribe: List-Unsubscribe: X-BeenThere: dev-commits-ports-all@freebsd.org Sender: owner-dev-commits-ports-all@FreeBSD.org MIME-Version: 1.0 Content-Type: text/plain; charset=utf-8 Content-Transfer-Encoding: 8bit X-Git-Committer: pkubaj X-Git-Repository: ports X-Git-Refname: refs/heads/main X-Git-Reftype: branch X-Git-Commit: e503a6d6bf8f2ec69aa2fd3b29119bb4cb169290 Auto-Submitted: auto-generated Date: Mon, 05 Jan 2026 13:57:08 +0000 Message-Id: <695bc334.43c25.29b55940@gitrepo.freebsd.org> The branch main has been updated by pkubaj: URL: https://cgit.FreeBSD.org/ports/commit/?id=e503a6d6bf8f2ec69aa2fd3b29119bb4cb169290 commit e503a6d6bf8f2ec69aa2fd3b29119bb4cb169290 Author: Piotr Kubaj AuthorDate: 2026-01-05 11:33:11 +0000 Commit: Piotr Kubaj CommitDate: 2026-01-05 13:57:01 +0000 biology/hyphy: fix build on amd64 / i386 c++: error: unsupported option '-mno-sse3' for target 'powerpc64le-unknown-freebsd15.0' --- biology/hyphy/files/patch-CMakeLists.txt | 20 ++++++++++++++++++++ 1 file changed, 20 insertions(+) diff --git a/biology/hyphy/files/patch-CMakeLists.txt b/biology/hyphy/files/patch-CMakeLists.txt new file mode 100644 index 000000000000..a0c2f4ef3473 --- /dev/null +++ b/biology/hyphy/files/patch-CMakeLists.txt @@ -0,0 +1,20 @@ +--- CMakeLists.txt.orig 2026-01-05 11:23:59 UTC ++++ CMakeLists.txt +@@ -161,10 +161,6 @@ if(CMAKE_CXX_COMPILER_ID MATCHES "GNU" OR CMAKE_CXX_CO + add_compile_definitions(_SLKP_USE_SSE_INTRINSICS) + endif() + set(CMAKE_REQUIRED_FLAGS ${OLD_CMAKE_REQUIRED_FLAGS}) +- else() +- if(NOT CMAKE_SYSTEM_NAME STREQUAL "Emscripten") +- list(APPEND COMMON_COMPILE_FLAGS "-mno-sse3") +- endif() + endif() + + endif() +@@ -366,4 +362,4 @@ add_test(NAME GARD COMMAND hyphy tests/hbltests/libv3/ + add_test(CONTRAST-FEL hyphy tests/hbltests/libv3/CFEL.wbf) + add_test(FADE hyphy tests/hbltests/libv3/FADE.wbf) + add_test(NAME GARD COMMAND hyphy tests/hbltests/libv3/GARD.wbf "ENV=TOLERATE_NUMERICAL_ERRORS=1;") +-add_test(ABSREL hyphy tests/hbltests/libv3/ABSREL.wbf) +\ No newline at end of file ++add_test(ABSREL hyphy tests/hbltests/libv3/ABSREL.wbf)