From owner-freebsd-pkg-fallout@freebsd.org Mon Aug 31 03:54:49 2020 Return-Path: Delivered-To: freebsd-pkg-fallout@mailman.nyi.freebsd.org Received: from mx1.freebsd.org (mx1.freebsd.org [IPv6:2610:1c1:1:606c::19:1]) by mailman.nyi.freebsd.org (Postfix) with ESMTP id DCD473D49CB for ; Mon, 31 Aug 2020 03:54:49 +0000 (UTC) (envelope-from pkg-fallout@FreeBSD.org) Received: from mailman.nyi.freebsd.org (unknown [127.0.1.3]) by mx1.freebsd.org (Postfix) with ESMTP id 4BfxD94wY1z40dY for ; Mon, 31 Aug 2020 03:54:49 +0000 (UTC) (envelope-from pkg-fallout@FreeBSD.org) Received: by mailman.nyi.freebsd.org (Postfix) id A8DD33D49CA; Mon, 31 Aug 2020 03:54:49 +0000 (UTC) Delivered-To: pkg-fallout@mailman.nyi.freebsd.org Received: from mx1.freebsd.org (mx1.freebsd.org [IPv6:2610:1c1:1:606c::19:1]) by mailman.nyi.freebsd.org (Postfix) with ESMTP id A89873D483D for ; Mon, 31 Aug 2020 03:54:49 +0000 (UTC) (envelope-from pkg-fallout@FreeBSD.org) Received: from mxrelay.nyi.freebsd.org (mxrelay.nyi.freebsd.org [IPv6:2610:1c1:1:606c::19:3]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) key-exchange X25519 server-signature RSA-PSS (4096 bits) server-digest SHA256 client-signature RSA-PSS (4096 bits) client-digest SHA256) (Client CN "mxrelay.nyi.freebsd.org", Issuer "Let's Encrypt Authority X3" (verified OK)) by mx1.freebsd.org (Postfix) with ESMTPS id 4BfxD94P6gz40mX for ; Mon, 31 Aug 2020 03:54:49 +0000 (UTC) (envelope-from pkg-fallout@FreeBSD.org) Received: from beefy8.nyi.freebsd.org (beefy8.nyi.freebsd.org [IPv6:2610:1c1:1:6080::16:eb]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) key-exchange X25519 server-signature RSA-PSS (4096 bits) server-digest SHA256) (Client did not present a certificate) by mxrelay.nyi.freebsd.org (Postfix) with ESMTPS id 7A2FA21AD9 for ; Mon, 31 Aug 2020 03:54:49 +0000 (UTC) (envelope-from pkg-fallout@FreeBSD.org) Received: from beefy8.nyi.freebsd.org (localhost [127.0.0.1]) by beefy8.nyi.freebsd.org (8.15.2/8.15.2) with ESMTP id 07V3sn96016124 for ; Mon, 31 Aug 2020 03:54:49 GMT (envelope-from pkg-fallout@FreeBSD.org) Received: (from root@localhost) by beefy8.nyi.freebsd.org (8.15.2/8.15.2/Submit) id 07V3snx1016123; Mon, 31 Aug 2020 03:54:49 GMT (envelope-from pkg-fallout@FreeBSD.org) Date: Mon, 31 Aug 2020 03:54:49 GMT From: pkg-fallout@FreeBSD.org Message-Id: <202008310354.07V3snx1016123@beefy8.nyi.freebsd.org> To: pkg-fallout@FreeBSD.org Subject: [package - head-armv6-default][biology/grappa] Failed for grappa-2.0 in build X-BeenThere: freebsd-pkg-fallout@freebsd.org X-Mailman-Version: 2.1.33 Precedence: list List-Id: Fallout logs from package building List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , X-List-Received-Date: Mon, 31 Aug 2020 03:54:49 -0000 You are receiving this mail as a port that you maintain is failing to build on the FreeBSD package build server. Please investigate the failure and submit a PR to fix build. Maintainer: ports@FreeBSD.org Last committer: rm@FreeBSD.org Ident: $FreeBSD: head/biology/grappa/Makefile 397864 2015-09-25 18:55:08Z rm $ Log URL: http://beefy8.nyi.freebsd.org/data/head-armv6-default/p546860_s364942/logs/grappa-2.0.log Build URL: http://beefy8.nyi.freebsd.org/build.html?mastername=head-armv6-default&build=p546860_s364942 Log: =>> Building biology/grappa build started at Mon Aug 31 03:54:25 UTC 2020 port directory: /usr/ports/biology/grappa package name: grappa-2.0 building for: FreeBSD head-armv6-default-job-16 13.0-CURRENT FreeBSD 13.0-CURRENT 1300113 arm maintained by: ports@FreeBSD.org Makefile ident: $FreeBSD: head/biology/grappa/Makefile 397864 2015-09-25 18:55:08Z rm $ Poudriere version: 3.2.8-5-gc81843e5 Host OSVERSION: 1300100 Jail OSVERSION: 1300113 Job Id: 16 !!! Jail is newer than host. (Jail: 1300113, Host: 1300100) !!! !!! This is not supported. !!! !!! Host kernel must be same or newer than jail. !!! !!! Expect build failures. !!! ---Begin Environment--- SHELL=/bin/csh UNAME_p=armv6 UNAME_m=arm ABI_FILE=/usr/lib/crt1.o OSVERSION=1300113 UNAME_v=FreeBSD 13.0-CURRENT 1300113 UNAME_r=13.0-CURRENT BLOCKSIZE=K MAIL=/var/mail/root STATUS=1 HOME=/root PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin LOCALBASE=/usr/local QEMU_EMULATING=1 USER=root LIBEXECPREFIX=/usr/local/libexec/poudriere POUDRIERE_VERSION=3.2.8-5-gc81843e5 MASTERMNT=/usr/local/poudriere/data/.m/head-armv6-default/ref POUDRIERE_BUILD_TYPE=bulk PACKAGE_BUILDING=yes SAVED_TERM= PWD=/usr/local/poudriere/data/.m/head-armv6-default/ref/.p/pool P_PORTS_FEATURES=FLAVORS SELECTED_OPTIONS MASTERNAME=head-armv6-default SCRIPTPREFIX=/usr/local/share/poudriere OLDPWD=/usr/local/poudriere/data/.m/head-armv6-default/ref/.p SCRIPTPATH=/usr/local/share/poudriere/bulk.sh POUDRIEREPATH=/usr/local/bin/poudriere ---End Environment--- ---Begin Poudriere Port Flags/Env--- PORT_FLAGS= PKGENV= FLAVOR= DEPENDS_ARGS= MAKE_ARGS= ---End Poudriere Port Flags/Env--- ---Begin OPTIONS List--- ---End OPTIONS List--- --MAINTAINER-- ports@FreeBSD.org --End MAINTAINER-- --CONFIGURE_ARGS-- --End CONFIGURE_ARGS-- --CONFIGURE_ENV-- MAKE=gmake XDG_DATA_HOME=/wrkdirs/usr/ports/biology/grappa/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/grappa/work HOME=/wrkdirs/usr/ports/biology/grappa/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/grappa/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin SHELL=/bin/sh CONFIG_SHELL=/bin/sh --End CONFIGURE_ENV-- --MAKE_ENV-- XDG_DATA_HOME=/wrkdirs/usr/ports/biology/grappa/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/grappa/work HOME=/wrkdirs/usr/ports/biology/grappa/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/grappa/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin NO_PIE=yes MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES PREFIX=/usr/local LOCALBASE=/usr/local CC="/nxb-bin/usr/bin/cc" CFLAGS="-O2 -pipe -fstack-protector-strong -fno-strict-aliasing " CPP="/nxb-bin/usr/bin/cpp" CPPFLAGS="" LDFLAGS=" -fstack-protector-strong " LIBS="" CXX="/nxb-bin/usr/bin/c++" CXXFLAGS="-O2 -pipe -fstack-protector-strong -fno-strict-aliasing " MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" --End MAKE_ENV-- --PLIST_SUB-- OSREL=13.0 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib DOCSDIR="share/doc/grappa" EXAMPLESDIR="share/examples/grappa" DATADIR="share/grappa" WWWDIR="www/grappa" ETCDIR="etc/grappa" --End PLIST_SUB-- --SUB_LIST-- PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/grappa DOCSDIR=/usr/local/share/doc/grappa EXAMPLESDIR=/usr/local/share/examples/grappa WWWDIR=/usr/local/www/grappa ETCDIR=/usr/local/etc/grappa --End SUB_LIST-- ---Begin make.conf--- .sinclude "/etc/make.nxb.conf" USE_PACKAGE_DEPENDS=yes BATCH=yes WRKDIRPREFIX=/wrkdirs PORTSDIR=/usr/ports PACKAGES=/packages DISTDIR=/distfiles PACKAGE_BUILDING=yes PACKAGE_BUILDING_FLAVORS=yes MACHINE=arm MACHINE_ARCH=armv6 ARCH=${MACHINE_ARCH} #### /usr/local/etc/poudriere.d/make.conf #### # XXX: We really need this but cannot use it while 'make checksum' does not # try the next mirror on checksum failure. It currently retries the same # failed mirror and then fails rather then trying another. It *does* # try the next if the size is mismatched though. #MASTER_SITE_FREEBSD=yes # Build ALLOW_MAKE_JOBS_PACKAGES with 2 jobs MAKE_JOBS_NUMBER=2 #### /usr/ports/Mk/Scripts/ports_env.sh #### _CCVERSION_9d218390=FreeBSD clang version 11.0.0 (git@github.com:llvm/llvm-project.git llvmorg-11.0.0-rc2-0-g414f32a9e86) Target: armv6-unknown-freebsd13.0-gnueabihf Thread model: posix InstalledDir: /nxb-bin/usr/bin _ALTCCVERSION_9d218390=none _CXXINTERNAL_9c45a5b1=FreeBSD clang version 11.0.0 (git@github.com:llvm/llvm-project.git llvmorg-11.0.0-rc2-0-g414f32a9e86) Target: armv6-unknown-freebsd13.0-gnueabihf Thread model: posix InstalledDir: /nxb-bin/usr/bin "/nxb-bin/usr/bin/ld" "--eh-frame-hdr" "-dynamic-linker" "/libexec/ld-elf.so.1" "--hash-style=both" "--enable-new-dtags" "-o" "a.out" "/usr/lib/crt1.o" "/usr/lib/crti.o" "/usr/lib/crtbegin.o" "-L/usr/lib" "/dev/null" "-lc++" "-lm" "-lgcc" "--as-needed" "-lgcc_s" "--no-as-needed" "-lc" "-lgcc" "--as-needed" "-lgcc_s" "--no-as-needed" "/usr/lib/crtend.o" "/usr/lib/crtn.o" CC_OUTPUT_9d218390_58173849=yes CC_OUTPUT_9d218390_9bdba57c=yes CC_OUTPUT_9d218390_6a4fe7f5=yes CC_OUTPUT_9d218390_6bcac02b=yes CC_OUTPUT_9d218390_67d20829=yes CC_OUTPUT_9d218390_bfa62e83=yes CC_OUTPUT_9d218390_f0b4d593=yes CC_OUTPUT_9d218390_308abb44=yes CC_OUTPUT_9d218390_f00456e5=yes CC_OUTPUT_9d218390_65ad290d=yes CC_OUTPUT_9d218390_f2776b26=yes CC_OUTPUT_9d218390_b2657cc3=yes CC_OUTPUT_9d218390_380987f7=yes CC_OUTPUT_9d218390_160933ec=yes CC_OUTPUT_9d218390_fb62803b=yes _OBJC_CCVERSION_9d218390=FreeBSD clang version 11.0.0 (git@github.com:llvm/llvm-project.git llvmorg-11.0.0-rc2-0-g414f32a9e86) Target: armv6-unknown-freebsd13.0-gnueabihf Thread model: posix InstalledDir: /nxb-bin/usr/bin _OBJC_ALTCCVERSION_9d218390=none ARCH=armv6 OPSYS=FreeBSD _OSRELEASE=13.0-CURRENT OSREL=13.0 OSVERSION=1300113 PYTHONBASE=/usr/local CONFIGURE_MAX_CMD_LEN=524288 HAVE_PORTS_ENV=1 #### Misc Poudriere #### GID=0 UID=0 DISABLE_MAKE_JOBS=poudriere ---End make.conf--- ---Begin make.nxb.conf--- CC=/nxb-bin/usr/bin/cc CPP=/nxb-bin/usr/bin/cpp CXX=/nxb-bin/usr/bin/c++ AS=/nxb-bin/usr/bin/as NM=/nxb-bin/usr/bin/nm LD=/nxb-bin/usr/bin/ld OBJCOPY=/nxb-bin/usr/bin/objcopy SIZE=/nxb-bin/usr/bin/size STRIPBIN=/nxb-bin/usr/bin/strip SED=/nxb-bin/usr/bin/sed RANLIB=/nxb-bin/usr/bin/ranlib YACC=/nxb-bin/usr/bin/yacc MAKE=/nxb-bin/usr/bin/make STRINGS=/nxb-bin/usr/bin/strings AWK=/nxb-bin/usr/bin/awk FLEX=/nxb-bin/usr/bin/flex ---End make.nxb.conf--- --Resource limits-- cpu time (seconds, -t) unlimited file size (512-blocks, -f) unlimited data seg size (kbytes, -d) 33554432 stack size (kbytes, -s) 524288 core file size (512-blocks, -c) unlimited max memory size (kbytes, -m) unlimited locked memory (kbytes, -l) unlimited max user processes (-u) 89999 open files (-n) 1024 virtual mem size (kbytes, -v) unlimited swap limit (kbytes, -w) unlimited socket buffer size (bytes, -b) unlimited pseudo-terminals (-p) unlimited kqueues (-k) unlimited umtx shared locks (-o) unlimited --End resource limits-- =================================================== ===> NOTICE: The grappa port currently does not have a maintainer. As a result, it is more likely to have unresolved issues, not be up-to-date, or even be removed in the future. To volunteer to maintain this port, please create an issue at: https://bugs.freebsd.org/bugzilla More information about port maintainership is available at: https://www.freebsd.org/doc/en/articles/contributing/ports-contributing.html#maintain-port ===> License GPLv2 accepted by the user =========================================================================== =================================================== ===> grappa-2.0 depends on file: /usr/local/sbin/pkg - not found ===> Installing existing package /packages/All/pkg-1.14.7.txz [head-armv6-default-job-16] Installing pkg-1.14.7... [head-armv6-default-job-16] Extracting pkg-1.14.7: .......... done ===> grappa-2.0 depends on file: /usr/local/sbin/pkg - found =========================================================================== =================================================== =========================================================================== =================================================== ===> Patching for grappa-2.0 ===> Applying FreeBSD patches for grappa-2.0 from /usr/ports/biology/grappa/files =========================================================================== =================================================== ===> grappa-2.0 depends on package: gmake>=4.3 - not found ===> Installing existing package /packages/All/gmake-4.3_2.txz [head-armv6-default-job-16] Installing gmake-4.3_2... [head-armv6-default-job-16] `-- Installing gettext-runtime-0.21... [head-armv6-default-job-16] | `-- Installing indexinfo-0.3.1... [head-armv6-default-job-16] | `-- Extracting indexinfo-0.3.1: .... done [head-armv6-default-job-16] `-- Extracting gettext-runtime-0.21: .......... done [head-armv6-default-job-16] Extracting gmake-4.3_2: .......... done ===> grappa-2.0 depends on package: gmake>=4.3 - found ===> Returning to build of grappa-2.0 =========================================================================== =================================================== =========================================================================== =================================================== ===> Configuring for grappa-2.0 =========================================================================== =================================================== ===> Building for grappa-2.0 gmake[1]: Entering directory '/wrkdirs/usr/ports/biology/grappa/work/GRAPPA20' /nxb-bin/usr/bin/cc -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DFreeBSD -DINIT -c convert.c -o convert.o /nxb-bin/usr/bin/cc -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DFreeBSD -DINIT -c labeltree.c -o labeltree.o /nxb-bin/usr/bin/cc -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DFreeBSD -DINIT -c main.c -o main.o main.c:2679:18: warning: overflow converting case value to switch condition type (-1 to 255) [-Wswitch] case EOF: ^ /usr/include/stdio.h:210:13: note: expanded from macro 'EOF' #define EOF (-1) ^ 1 warning generated. /nxb-bin/usr/bin/cc -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DFreeBSD -DINIT -c binencode.c -o binencode.o /nxb-bin/usr/bin/cc -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DFreeBSD -DINIT -c gen_tree.c -o gen_tree.o /nxb-bin/usr/bin/cc -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DFreeBSD -DINIT -c inittree.c -o inittree.o /nxb-bin/usr/bin/cc -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DFreeBSD -DINIT -c circ_order.c -o circ_order.o /nxb-bin/usr/bin/cc -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DFreeBSD -DINIT -c lk_main.c -o lk_main.o /nxb-bin/usr/bin/cc -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DFreeBSD -DINIT -c bbtsp.c -o bbtsp.o /nxb-bin/usr/bin/cc -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DFreeBSD -DINIT -c condense.c -o condense.o /nxb-bin/usr/bin/cc -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DFreeBSD -DINIT -c const_tree.c -o const_tree.o /nxb-bin/usr/bin/cc -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DFreeBSD -DINIT -c greedy_median.c -o greedy_median.o /nxb-bin/usr/bin/cc -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DFreeBSD -DINIT -c invdist.c -o invdist.o /nxb-bin/usr/bin/cc -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DFreeBSD -DINIT -c uf.c -o uf.o /nxb-bin/usr/bin/cc -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DFreeBSD -DINIT -c neighborj.c -o neighborj.o /nxb-bin/usr/bin/cc -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DFreeBSD -DINIT -c condense3.c -o condense3.o /nxb-bin/usr/bin/cc -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DFreeBSD -DINIT -c getopt3.c -o getopt3.o /nxb-bin/usr/bin/cc -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DFreeBSD -DINIT -c randomBSD.c -o randomBSD.o /nxb-bin/usr/bin/cc -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DFreeBSD -DINIT -c cheaptsp.c -o cheaptsp.o /nxb-bin/usr/bin/cc -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DFreeBSD -DINIT -c specialtsp.c -o specialtsp.o /nxb-bin/usr/bin/cc -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DFreeBSD -DINIT -c specialinit.c -o specialinit.o /nxb-bin/usr/bin/cc -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DFreeBSD -DINIT -c read_input.c -o read_input.o /nxb-bin/usr/bin/cc -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DFreeBSD -DINIT -c circular_ordering.c -o circular_ordering.o /nxb-bin/usr/bin/cc -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DFreeBSD -DINIT -c correction.c -o correction.o /nxb-bin/usr/bin/cc -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DFreeBSD -DINIT -c inversion_median.c -o inversion_median.o /nxb-bin/usr/bin/cc -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DFreeBSD -DINIT -c inversion_median_alberto.c -o inversion_median_alberto.o /nxb-bin/usr/bin/cc -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DFreeBSD -DINIT -c priority_stack.c -o priority_stack.o /nxb-bin/usr/bin/cc -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DFreeBSD -DINIT -c hashtable.c -o hashtable.o /nxb-bin/usr/bin/cc -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DFreeBSD -DINIT -c med_util.c -o med_util.o /nxb-bin/usr/bin/cc -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DFreeBSD -DINIT -c simpleio.c -o simpleio.o /nxb-bin/usr/bin/cc -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DFreeBSD -DINIT -c vertex_factory.c -o vertex_factory.o /nxb-bin/usr/bin/cc -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DFreeBSD -DINIT -c growTree.c -o growTree.o /nxb-bin/usr/bin/cc -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DFreeBSD -DINIT -c bitvector.c -o bitvector.o /nxb-bin/usr/bin/cc -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DFreeBSD -DINIT -c lists.c -o lists.o /nxb-bin/usr/bin/cc -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DFreeBSD -DINIT -c sorting_reversal_median.c -o sorting_reversal_median.o /nxb-bin/usr/bin/cc -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DFreeBSD -DINIT -c mythread_rwlock.c -o mythread_rwlock.o /nxb-bin/usr/bin/cc -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DFreeBSD -DINIT -c all_sorting_reversals.c -o all_sorting_reversals.o /nxb-bin/usr/bin/cc -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DFreeBSD -DINIT -o grappa convert.o labeltree.o main.o binencode.o gen_tree.o inittree.o circ_order.o lk_main.o bbtsp.o condense.o const_tree.o greedy_median.o invdist.o uf.o neighborj.o condense3.o getopt3.o randomBSD.o cheaptsp.o specialtsp.o specialinit.o read_input.o circular_ordering.o correction.o inversion_median.o inversion_median_alberto.o priority_stack.o hashtable.o med_util.o simpleio.o vertex_factory.o growTree.o bitvector.o lists.o sorting_reversal_median.o mythread_rwlock.o all_sorting_reversals.o -lm -pthread ld: error: duplicate symbol: MAXEDG >>> defined at labeltree.c >>> labeltree.o:(MAXEDG) >>> defined at main.c >>> main.o:(.bss+0x18) ld: error: duplicate symbol: MAXM >>> defined at labeltree.c >>> labeltree.o:(MAXM) >>> defined at main.c >>> main.o:(.bss+0x14) ld: error: duplicate symbol: MAXNOD >>> defined at labeltree.c >>> labeltree.o:(MAXNOD) >>> defined at main.c >>> main.o:(.bss+0x10) ld: error: duplicate symbol: Num_Genes >>> defined at labeltree.c >>> labeltree.o:(Num_Genes) >>> defined at main.c >>> main.o:(.bss+0xC) ld: error: duplicate symbol: UB >>> defined at labeltree.c >>> labeltree.o:(UB) >>> defined at main.c >>> main.o:(.bss+0xA8) ld: error: duplicate symbol: at_root >>> defined at labeltree.c >>> labeltree.o:(at_root) >>> defined at main.c >>> main.o:(.bss+0x80) ld: error: duplicate symbol: bcyceq >>> defined at labeltree.c >>> labeltree.o:(bcyceq) >>> defined at main.c >>> main.o:(.bss+0x74) ld: error: duplicate symbol: bcycvar >>> defined at labeltree.c >>> labeltree.o:(bcycvar) >>> defined at main.c >>> main.o:(.bss+0x64) ld: error: duplicate symbol: bdegree >>> defined at labeltree.c >>> labeltree.o:(bdegree) >>> defined at main.c >>> main.o:(.bss+0x6C) ld: error: duplicate symbol: bedge >>> defined at labeltree.c >>> labeltree.o:(bedge) >>> defined at main.c >>> main.o:(.bss+0x58) ld: error: duplicate symbol: best_now >>> defined at labeltree.c >>> labeltree.o:(best_now) >>> defined at main.c >>> main.o:(.bss+0xAC) ld: error: duplicate symbol: bestsol >>> defined at labeltree.c >>> labeltree.o:(bestsol) >>> defined at main.c >>> main.o:(.bss+0x90) ld: error: duplicate symbol: bestub >>> defined at labeltree.c >>> labeltree.o:(bestub) >>> defined at main.c >>> main.o:(.bss+0x88) ld: error: duplicate symbol: bsec >>> defined at labeltree.c >>> labeltree.o:(bsec) >>> defined at main.c >>> main.o:(.bss+0x7C) ld: error: duplicate symbol: cycvar >>> defined at labeltree.c >>> labeltree.o:(cycvar) >>> defined at main.c >>> main.o:(.bss+0xA4) ld: error: duplicate symbol: e_ind >>> defined at labeltree.c >>> labeltree.o:(e_ind) >>> defined at main.c >>> main.o:(.bss+0x2C) ld: error: duplicate symbol: ec >>> defined at labeltree.c >>> labeltree.o:(ec) >>> defined at main.c >>> main.o:(.bss+0x28) ld: error: duplicate symbol: fid >>> defined at labeltree.c >>> labeltree.o:(fid) >>> defined at main.c >>> main.o:(.bss+0x98) ld: error: duplicate symbol: fout >>> defined at labeltree.c >>> labeltree.o:(fout) >>> defined at main.c >>> main.o:(.bss+0x9C) ld: error: duplicate symbol: gen >>> defined at labeltree.c >>> labeltree.o:(gen) >>> defined at main.c >>> main.o:(.bss+0xF4) ld: error: too many errors emitted, stopping now (use -error-limit=0 to see all errors) cc: error: linker command failed with exit code 1 (use -v to see invocation) gmake[1]: *** [Makefile:129: grappa] Error 1 gmake[1]: Leaving directory '/wrkdirs/usr/ports/biology/grappa/work/GRAPPA20' *** Error code 1 Stop. make: stopped in /usr/ports/biology/grappa