Date: Fri, 3 Nov 2023 22:02:17 GMT From: Yuri Victorovich <yuri@FreeBSD.org> To: ports-committers@FreeBSD.org, dev-commits-ports-all@FreeBSD.org, dev-commits-ports-main@FreeBSD.org Subject: git: 3a75bcff89ef - main - biology/viennarna: update 2.6.3 =?utf-8?Q?=E2=86=92?= 2.6.4 Message-ID: <202311032202.3A3M2HDt082447@gitrepo.freebsd.org>
next in thread | raw e-mail | index | archive | help
The branch main has been updated by yuri: URL: https://cgit.FreeBSD.org/ports/commit/?id=3a75bcff89efbcf7a3ddfc734543b7645ae3fcf6 commit 3a75bcff89efbcf7a3ddfc734543b7645ae3fcf6 Author: Yuri Victorovich <yuri@FreeBSD.org> AuthorDate: 2023-11-03 22:01:48 +0000 Commit: Yuri Victorovich <yuri@FreeBSD.org> CommitDate: 2023-11-03 22:02:11 +0000 biology/viennarna: update 2.6.3 → 2.6.4 --- biology/viennarna/Makefile | 17 +++++++++++------ biology/viennarna/distinfo | 6 +++--- 2 files changed, 14 insertions(+), 9 deletions(-) diff --git a/biology/viennarna/Makefile b/biology/viennarna/Makefile index 2f63809d8c61..9b9d0b3b4adb 100644 --- a/biology/viennarna/Makefile +++ b/biology/viennarna/Makefile @@ -1,5 +1,5 @@ PORTNAME= viennarna -DISTVERSION= 2.6.3 +DISTVERSION= 2.6.4 CATEGORIES= biology MASTER_SITES= https://www.tbi.univie.ac.at/RNA/download/sourcecode/2_6_x/ DISTNAME= ViennaRNA-${DISTVERSION} @@ -13,23 +13,28 @@ LICENSE_NAME= Vienna RNA License LICENSE_FILE= ${WRKSRC}/COPYING LICENSE_PERMS= auto-accept dist-mirror pkg-mirror -BROKEN_FreeBSD_14= fails to compile: no member named 'bind2nd' in namespace 'std' +#BROKEN_FreeBSD_14= fails to compile: no member named 'bind2nd' in namespace 'std' BUILD_DEPENDS= bash:shells/bash \ + lapacke>0:math/lapacke \ libgd>0:graphics/gd # for the static lib +BUILD_DEPENDS+= swig:devel/swig \ + xxd:sysutils/xxd LIB_DEPENDS= libgmp.so:math/gmp \ libgsl.so:math/gsl \ liblapack.so:math/lapack \ - libmpfr.so:math/mpfr \ - libopenblas.so:math/openblas + libmpfr.so:math/mpfr -USES= autoreconf compiler:c++11-lang fortran gmake libtool localbase perl5 pkgconfig xorg # w/out autoreconf -lstdc++ is present in configure and Makefiles and this causes link failure -USE_XORG= x11 xext # only for build +USES= autoreconf bison compiler:c++17-lang fortran gmake \ + libtool localbase perl5 pkgconfig xorg # w/out autoreconf -lstdc++ is present in configure and Makefiles and this causes link failure +USE_XORG= ice x11 xext # only for build GNU_CONFIGURE= yes CONFIGURE_SHELL= ${PREFIX}/bin/bash CONFIGURE_ARGS= --enable-shared --disable-static --with-gsl --with-cluster --with-kinwalker --enable-mpfr --without-python --without-python3 --without-perl +CXXFLAGS+= -Dregister= # workaround for https://github.com/ViennaRNA/ViennaRNA/issues/214 + TEST_TARGET= check CONFLICTS_INSTALL= g2 # include/g2.h diff --git a/biology/viennarna/distinfo b/biology/viennarna/distinfo index 25276d5df560..75d1552bb0c9 100644 --- a/biology/viennarna/distinfo +++ b/biology/viennarna/distinfo @@ -1,3 +1,3 @@ -TIMESTAMP = 1690013390 -SHA256 (ViennaRNA-2.6.3.tar.gz) = 07b5c3abcda3076f3dd2041a67df5aa25d21468ae41f18eaecf3aaa7751ab495 -SIZE (ViennaRNA-2.6.3.tar.gz) = 66320039 +TIMESTAMP = 1699041043 +SHA256 (ViennaRNA-2.6.4.tar.gz) = d1259ce5809601a12b0dc9b724ea2c55806fece80d8d83ad417ea8a2dd574982 +SIZE (ViennaRNA-2.6.4.tar.gz) = 69749819
Want to link to this message? Use this URL: <https://mail-archive.FreeBSD.org/cgi/mid.cgi?202311032202.3A3M2HDt082447>