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Subject: [Bug 207908] [NEW PORT] biology/bowtie2: Ultrafast, memory-efficient
 short read aligner
Date: Wed, 23 Mar 2016 11:23:20 +0000
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https://bugs.freebsd.org/bugzilla/show_bug.cgi?id=3D207908

--- Comment #2 from commit-hook@freebsd.org ---
A commit references this bug:

Author: rakuco
Date: Wed Mar 23 11:22:40 UTC 2016
New revision: 411698
URL: https://svnweb.freebsd.org/changeset/ports/411698

Log:
  New port: biology/bowtie2.

  Bowtie is an ultrafast, memory-efficient short read aligner. It aligns sh=
ort
  DNA sequences (reads) to the human genome at a rate of over 25 million 35=
-bp
  reads per hour.

  This is Bowtie version 2, which will need to coexists with Bowtie 1 for t=
he
  foreseeable future. Both are required by certain genomics pipelines, in s=
ome
  cases (e.g. Trinity) by the same pipeline.

  WWW: https://github.com/BenLangmead/bowtie2

  PR:           207908
  Submitted by: Jason Bacon <bacon4000@gmail.com>

Changes:
  head/biology/Makefile
  head/biology/bowtie2/
  head/biology/bowtie2/Makefile
  head/biology/bowtie2/distinfo
  head/biology/bowtie2/files/
  head/biology/bowtie2/files/patch-Makefile
  head/biology/bowtie2/pkg-descr
  head/biology/bowtie2/pkg-plist

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