Date: Wed, 17 Jun 2020 01:05:54 GMT From: pkg-fallout@FreeBSD.org To: yuri@FreeBSD.org Cc: pkg-fallout@FreeBSD.org Subject: [package - 113i386-default][science/votca] Failed for votca-1.6_1 in build Message-ID: <202006170105.05H15s2m094639@beefy10.nyi.freebsd.org>
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You are receiving this mail as a port that you maintain is failing to build on the FreeBSD package build server. Please investigate the failure and submit a PR to fix build. Maintainer: yuri@FreeBSD.org Last committer: linimon@FreeBSD.org Ident: $FreeBSD: head/science/votca/Makefile 534168 2020-05-06 12:04:05Z linimon $ Log URL: http://beefy10.nyi.freebsd.org/data/113i386-default/539306/logs/votca-1.6_1.log Build URL: http://beefy10.nyi.freebsd.org/build.html?mastername=113i386-default&build=539306 Log: =>> Building science/votca build started at Wed Jun 17 00:32:17 UTC 2020 port directory: /usr/ports/science/votca package name: votca-1.6_1 building for: FreeBSD 113i386-default-job-07 11.3-RELEASE-p10 FreeBSD 11.3-RELEASE-p10 i386 maintained by: yuri@FreeBSD.org Makefile ident: $FreeBSD: head/science/votca/Makefile 534168 2020-05-06 12:04:05Z linimon $ Poudriere version: 3.2.8-5-gc81843e5 Host OSVERSION: 1300089 Jail OSVERSION: 1103000 Job Id: 07 ---Begin Environment--- SHELL=/bin/csh UNAME_p=i386 UNAME_m=i386 OSVERSION=1103000 UNAME_v=FreeBSD 11.3-RELEASE-p10 UNAME_r=11.3-RELEASE-p10 BLOCKSIZE=K MAIL=/var/mail/root STATUS=1 HOME=/root PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin LOCALBASE=/usr/local USER=root LIBEXECPREFIX=/usr/local/libexec/poudriere POUDRIERE_VERSION=3.2.8-5-gc81843e5 MASTERMNT=/usr/local/poudriere/data/.m/113i386-default/ref POUDRIERE_BUILD_TYPE=bulk PACKAGE_BUILDING=yes SAVED_TERM= PWD=/usr/local/poudriere/data/.m/113i386-default/ref/.p/pool P_PORTS_FEATURES=FLAVORS SELECTED_OPTIONS MASTERNAME=113i386-default SCRIPTPREFIX=/usr/local/share/poudriere OLDPWD=/usr/local/poudriere/data/.m/113i386-default/ref/.p SCRIPTPATH=/usr/local/share/poudriere/bulk.sh POUDRIEREPATH=/usr/local/bin/poudriere ---End Environment--- ---Begin Poudriere Port Flags/Env--- PORT_FLAGS= PKGENV= FLAVOR= DEPENDS_ARGS= MAKE_ARGS= ---End Poudriere Port Flags/Env--- ---Begin OPTIONS List--- ---End OPTIONS List--- --MAINTAINER-- yuri@FreeBSD.org --End MAINTAINER-- --CONFIGURE_ARGS-- --End CONFIGURE_ARGS-- --CONFIGURE_ENV-- ac_cv_path_PERL=/usr/local/bin/perl ac_cv_path_PERL_PATH=/usr/local/bin/perl PERL_USE_UNSAFE_INC=1 PKG_CONFIG=pkgconf PYTHON="/usr/local/bin/python3.7" XDG_DATA_HOME=/wrkdirs/usr/ports/science/votca/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/science/votca/work HOME=/wrkdirs/usr/ports/science/votca/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/science/votca/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin SHELL=/bin/sh CONFIG_SHELL=/bin/sh --End CONFIGURE_ENV-- --MAKE_ENV-- PERL_USE_UNSAFE_INC=1 XDG_DATA_HOME=/wrkdirs/usr/ports/science/votca/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/science/votca/work HOME=/wrkdirs/usr/ports/science/votca/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/science/votca/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin NO_PIE=yes MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES DESTDIR=/wrkdirs/usr/ports/science/votca/work/stage PREFIX=/usr/local LOCALBASE=/usr/local CC="cc" CFLAGS="-O2 -pipe -fstack-protector-strong -fno-strict-aliasing " CPP="cpp" CPPFLAGS="" LDFLAGS=" -fstack-protector-strong " LIBS="" CXX="c++" CXXFLAGS="-O2 -pipe -fstack-protector-strong -fno-strict-aliasing " MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" --End MAKE_ENV-- --PLIST_SUB-- CMAKE_BUILD_TYPE="release" PYTHON_INCLUDEDIR=include/python3.7m PYTHON_LIBDIR=lib/python3.7 PYTHON_PLATFORM=freebsd11 PYTHON_SITELIBDIR=lib/python3.7/site-packages PYTHON_SUFFIX=37 PYTHON_VER=3.7 PYTHON_VERSION=python3.7 PYTHON2="@comment " PYTHON3="" OSREL=11.3 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib PERL_VERSION=5.30.3 PERL_VER=5.30 PERL5_MAN1=lib/perl5/site_perl/man/man1 PERL5_MAN3=lib/perl5/site_perl/man/man3 SITE_PERL=lib/perl5/site_perl SITE_ARCH=lib/perl5/site_perl/mach/5.30 DOCSDIR="share/doc/votca" EXAMPLESDIR="share/examples/votca" DATADIR="share/votca" WWWDIR="www/votca" ETCDIR="etc/votca" --End PLIST_SUB-- --SUB_LIST-- PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/votca DOCSDIR=/usr/local/share/doc/votca EXAMPLESDIR=/usr/local/share/examples/votca WWWDIR=/usr/local/www/votca ETCDIR=/usr/local/etc/votca --End SUB_LIST-- ---Begin make.conf--- USE_PACKAGE_DEPENDS=yes BATCH=yes WRKDIRPREFIX=/wrkdirs PORTSDIR=/usr/ports PACKAGES=/packages DISTDIR=/distfiles PACKAGE_BUILDING=yes PACKAGE_BUILDING_FLAVORS=yes MACHINE=i386 MACHINE_ARCH=i386 ARCH=${MACHINE_ARCH} #### /usr/local/etc/poudriere.d/make.conf #### # XXX: We really need this but cannot use it while 'make checksum' does not # try the next mirror on checksum failure. It currently retries the same # failed mirror and then fails rather then trying another. It *does* # try the next if the size is mismatched though. #MASTER_SITE_FREEBSD=yes # Build ALLOW_MAKE_JOBS_PACKAGES with 2 jobs MAKE_JOBS_NUMBER=2 #### /usr/ports/Mk/Scripts/ports_env.sh #### _CCVERSION_921dbbb2=FreeBSD clang version 8.0.0 (tags/RELEASE_800/final 356365) (based on LLVM 8.0.0) Target: i386-unknown-freebsd11.3 Thread model: posix InstalledDir: /usr/bin _ALTCCVERSION_921dbbb2=none _CXXINTERNAL_acaad9ca=FreeBSD clang version 8.0.0 (tags/RELEASE_800/final 356365) (based on LLVM 8.0.0) Target: i386-unknown-freebsd11.3 Thread model: posix InstalledDir: /usr/bin "/usr/bin/ld" "--eh-frame-hdr" "-dynamic-linker" "/libexec/ld-elf.so.1" "--hash-style=both" "--enable-new-dtags" "-m" "elf_i386_fbsd" "-o" "a.out" "/usr/lib/crt1.o" "/usr/lib/crti.o" "/usr/lib/crtbegin.o" "-L/usr/lib" "/dev/null" "-lc++" "-lm" "-lgcc" "--as-needed" "-lgcc_s" "--no-as-needed" "-lc" "-lgcc" "--as-needed" "-lgcc_s" "--no-as-needed" "/usr/lib/crtend.o" "/usr/lib/crtn.o" CC_OUTPUT_921dbbb2_58173849=yes CC_OUTPUT_921dbbb2_9bdba57c=yes CC_OUTPUT_921dbbb2_6a4fe7f5=yes CC_OUTPUT_921dbbb2_6bcac02b=yes CC_OUTPUT_921dbbb2_67d20829=yes CC_OUTPUT_921dbbb2_bfa62e83=yes CC_OUTPUT_921dbbb2_f0b4d593=yes CC_OUTPUT_921dbbb2_308abb44=yes CC_OUTPUT_921dbbb2_f00456e5=yes CC_OUTPUT_921dbbb2_65ad290d=yes CC_OUTPUT_921dbbb2_f2776b26=yes CC_OUTPUT_921dbbb2_b2657cc3=yes CC_OUTPUT_921dbbb2_380987f7=yes CC_OUTPUT_921dbbb2_160933ec=yes CC_OUTPUT_921dbbb2_fb62803b=yes _OBJC_CCVERSION_921dbbb2=FreeBSD clang version 8.0.0 (tags/RELEASE_800/final 356365) (based on LLVM 8.0.0) Target: i386-unknown-freebsd11.3 Thread model: posix InstalledDir: /usr/bin _OBJC_ALTCCVERSION_921dbbb2=none ARCH=i386 OPSYS=FreeBSD _OSRELEASE=11.3-RELEASE-p10 OSREL=11.3 OSVERSION=1103000 PYTHONBASE=/usr/local CONFIGURE_MAX_CMD_LEN=524288 HAVE_PORTS_ENV=1 #### Misc Poudriere #### GID=0 UID=0 DISABLE_MAKE_JOBS=poudriere ---End make.conf--- --Resource limits-- cpu time (seconds, -t) unlimited file size (512-blocks, -f) unlimited data seg size (kbytes, -d) 524288 stack size (kbytes, -s) 65536 core file size (512-blocks, -c) unlimited max memory size (kbytes, -m) unlimited locked memory (kbytes, -l) unlimited max user processes (-u) 89999 open files (-n) 1024 virtual mem size (kbytes, -v) unlimited swap limit (kbytes, -w) unlimited socket buffer size (bytes, -b) unlimited pseudo-terminals (-p) unlimited kqueues (-k) unlimited umtx shared locks (-o) unlimited --End resource limits-- =======================<phase: check-sanity >============================ ===> License APACHE20 accepted by the user =========================================================================== =======================<phase: pkg-depends >============================ ===> votca-1.6_1 depends on file: /usr/local/sbin/pkg - not found ===> Installing existing package /packages/All/pkg-1.14.4.txz [113i386-default-job-07] Installing pkg-1.14.4... [113i386-default-job-07] Extracting pkg-1.14.4: .......... done ===> votca-1.6_1 depends on file: /usr/local/sbin/pkg - found ===> Returning to build of votca-1.6_1 =========================================================================== =======================<phase: fetch-depends >============================ =========================================================================== =======================<phase: fetch >============================ ===> License APACHE20 accepted by the user ===> Fetching all distfiles required by votca-1.6_1 for building =========================================================================== =======================<phase: checksum >============================ ===> License APACHE20 accepted by the user ===> Fetching all distfiles required by votca-1.6_1 for building => SHA256 Checksum OK for votca-votca-v1.6_GH0.tar.gz. => SHA256 Checksum OK for votca-tools-c34ee0244cd2e6c8772ce239b3045294d911736d_GH0.tar.gz. => SHA256 Checksum OK for votca-csg-6bb24ff260c87d1cf1b89d91dc12901eb462d974_GH0.tar.gz. => SHA256 Checksum OK for votca-csgapps-a26503c0aaa10b024a59180d15dde9c7e11256a4_GH0.tar.gz. => SHA256 Checksum OK for votca-xtp-24260506ccb4de0e82add46ab1cd43b9e8130807_GH0.tar.gz. => SHA256 Checksum OK for votca-csg-tutorials-dd8df99ce7548e2ad7c819fcd8e617946d532493_GH0.tar.gz. => SHA256 Checksum OK for votca-csg-manual-85fbc7e8a7469db31eb3597f9c651d51a4ef5d2b_GH0.tar.gz. => SHA256 Checksum OK for votca-xtp-tutorials-a7a608b5752db59f6d94482ff5ace36e7faa21aa_GH0.tar.gz. =========================================================================== =======================<phase: extract-depends>============================ =========================================================================== =======================<phase: extract >============================ ===> License APACHE20 accepted by the user ===> Fetching all distfiles required by votca-1.6_1 for building ===> Extracting for votca-1.6_1 => SHA256 Checksum OK for votca-votca-v1.6_GH0.tar.gz. => SHA256 Checksum OK for votca-tools-c34ee0244cd2e6c8772ce239b3045294d911736d_GH0.tar.gz. => SHA256 Checksum OK for votca-csg-6bb24ff260c87d1cf1b89d91dc12901eb462d974_GH0.tar.gz. => SHA256 Checksum OK for votca-csgapps-a26503c0aaa10b024a59180d15dde9c7e11256a4_GH0.tar.gz. => SHA256 Checksum OK for votca-xtp-24260506ccb4de0e82add46ab1cd43b9e8130807_GH0.tar.gz. => SHA256 Checksum OK for votca-csg-tutorials-dd8df99ce7548e2ad7c819fcd8e617946d532493_GH0.tar.gz. => SHA256 Checksum OK for votca-csg-manual-85fbc7e8a7469db31eb3597f9c651d51a4ef5d2b_GH0.tar.gz. => SHA256 Checksum OK for votca-xtp-tutorials-a7a608b5752db59f6d94482ff5ace36e7faa21aa_GH0.tar.gz. =========================================================================== =======================<phase: patch-depends >============================ =========================================================================== =======================<phase: patch >============================ ===> Patching for votca-1.6_1 =========================================================================== =======================<phase: build-depends >============================ ===> votca-1.6_1 depends on file: /usr/local/bin/cmake - not found ===> Installing existing package /packages/All/cmake-3.17.3.txz <snip> In file included from /wrkdirs/usr/ports/science/votca/work/votca-1.6/xtp/src/libxtp/tools/molpol.cc:20: In file included from /wrkdirs/usr/ports/science/votca/work/votca-1.6/xtp/src/libxtp/tools/molpol.h:25: In file included from /wrkdirs/usr/ports/science/votca/work/votca-1.6/xtp/include/votca/xtp/classicalsegment.h:24: In file included from /wrkdirs/usr/ports/science/votca/work/votca-1.6/xtp/include/votca/xtp/atomcontainer.h:26: In file included from /wrkdirs/usr/ports/science/votca/work/votca-1.6/xtp/include/votca/xtp/checkpoint.h:23: In file included from /wrkdirs/usr/ports/science/votca/work/votca-1.6/xtp/include/votca/xtp/checkpointreader.h:27: /wrkdirs/usr/ports/science/votca/work/votca-1.6/xtp/include/votca/xtp/checkpointtable.h:55:14: warning: implicit conversion loses integer precision: 'hsize_t' (aka 'unsigned long long') to 'std::size_t' (aka 'unsigned int') [-Wshorten-64-to-32] _nRows = dims[0]; ~ ^~~~~~~ In file included from /wrkdirs/usr/ports/science/votca/work/votca-1.6/xtp/src/libxtp/tools/molpol.cc:20: In file included from /wrkdirs/usr/ports/science/votca/work/votca-1.6/xtp/src/libxtp/tools/molpol.h:25: In file included from /wrkdirs/usr/ports/science/votca/work/votca-1.6/xtp/include/votca/xtp/classicalsegment.h:24: In file included from /wrkdirs/usr/ports/science/votca/work/votca-1.6/xtp/include/votca/xtp/atomcontainer.h:26: In file included from /wrkdirs/usr/ports/science/votca/work/votca-1.6/xtp/include/votca/xtp/checkpoint.h:23: /wrkdirs/usr/ports/science/votca/work/votca-1.6/xtp/include/votca/xtp/checkpointreader.h:110:46: warning: implicit conversion loses integer precision: 'hsize_t' (aka 'unsigned long long') to 'votca::Index' (aka 'int') [-Wshorten-64-to-32] Index getNumDataSets() const { return _loc.getNumObjs(); } ~~~~~~ ~~~~~^~~~~~~~~~~~ /wrkdirs/usr/ports/science/votca/work/votca-1.6/xtp/include/votca/xtp/checkpointreader.h:235:29: warning: implicit conversion loses integer precision: 'hsize_t' (aka 'unsigned long long') to 'std::__1::vector<char *, std::__1::allocator<char *> >::size_type' (aka 'unsigned int') [-Wshorten-64-to-32] std::vector<char*> temp(dims[0]); ~~~~ ^~~~~~~ /wrkdirs/usr/ports/science/votca/work/votca-1.6/xtp/include/votca/xtp/checkpointreader.h:247:15: warning: implicit conversion loses integer precision: 'hsize_t' (aka 'unsigned long long') to 'std::__1::vector<std::__1::basic_string<char>, std::__1::allocator<std::__1::basic_string<char> > >::size_type' (aka 'unsigned int') [-Wshorten-64-to-32] v.reserve(dims[0]); ~~~~~~~ ^~~~~~~ /wrkdirs/usr/ports/science/votca/work/votca-1.6/xtp/include/votca/xtp/checkpointreader.h:270:27: warning: implicit conversion loses integer precision: 'hsize_t' (aka 'unsigned long long') to 'size_t' (aka 'unsigned int') [-Wshorten-64-to-32] size_t count = parent.getNumObjs(); ~~~~~ ~~~~~~~^~~~~~~~~~~~ /wrkdirs/usr/ports/science/votca/work/votca-1.6/xtp/include/votca/xtp/checkpointreader.h:169:29: warning: implicit conversion loses integer precision: 'hsize_t' (aka 'unsigned long long') to 'Eigen::Index' (aka 'int') [-Wshorten-64-to-32] matrix.derived().resize(matRows, matCols); ~~~~~~ ^~~~~~~ /wrkdirs/usr/ports/science/votca/work/votca-1.6/xtp/include/votca/xtp/checkpointreader.h:258:5: note: in instantiation of function template specialization 'votca::xtp::CheckpointReader::ReadData<Eigen::Matrix<double, -1, 1, 0, -1, 1> >' requested here ReadData(parent, sys.eigenvalues(), "eigenvalues"); ^ /wrkdirs/usr/ports/science/votca/work/votca-1.6/xtp/include/votca/xtp/checkpointreader.h:169:38: warning: implicit conversion loses integer precision: 'hsize_t' (aka 'unsigned long long') to 'Eigen::Index' (aka 'int') [-Wshorten-64-to-32] matrix.derived().resize(matRows, matCols); ~~~~~~ ^~~~~~~ /wrkdirs/usr/ports/science/votca/work/votca-1.6/xtp/include/votca/xtp/checkpointreader.h:169:29: warning: implicit conversion loses integer precision: 'hsize_t' (aka 'unsigned long long') to 'Eigen::Index' (aka 'int') [-Wshorten-64-to-32] matrix.derived().resize(matRows, matCols); ~~~~~~ ^~~~~~~ /wrkdirs/usr/ports/science/votca/work/votca-1.6/xtp/include/votca/xtp/checkpointreader.h:259:5: note: in instantiation of function template specialization 'votca::xtp::CheckpointReader::ReadData<Eigen::Matrix<double, -1, -1, 0, -1, -1> >' requested here ReadData(parent, sys.eigenvectors(), "eigenvectors"); ^ /wrkdirs/usr/ports/science/votca/work/votca-1.6/xtp/include/votca/xtp/checkpointreader.h:169:38: warning: implicit conversion loses integer precision: 'hsize_t' (aka 'unsigned long long') to 'Eigen::Index' (aka 'int') [-Wshorten-64-to-32] matrix.derived().resize(matRows, matCols); ~~~~~~ ^~~~~~~ /wrkdirs/usr/ports/science/votca/work/votca-1.6/xtp/include/votca/xtp/checkpointreader.h:169:29: warning: implicit conversion loses integer precision: 'hsize_t' (aka 'unsigned long long') to 'Eigen::Index' (aka 'int') [-Wshorten-64-to-32] matrix.derived().resize(matRows, matCols); ~~~~~~ ^~~~~~~ /wrkdirs/usr/ports/science/votca/work/votca-1.6/xtp/include/votca/xtp/checkpointreader.h:276:7: note: in instantiation of function template specialization 'votca::xtp::CheckpointReader::ReadData<Eigen::Matrix<double, 3, 1, 0, 3, 1> >' requested here ReadData(parent, vec, "ind" + std::to_string(c)); ^ /wrkdirs/usr/ports/science/votca/work/votca-1.6/xtp/include/votca/xtp/checkpointreader.h:169:38: warning: implicit conversion loses integer precision: 'hsize_t' (aka 'unsigned long long') to 'Eigen::Index' (aka 'int') [-Wshorten-64-to-32] matrix.derived().resize(matRows, matCols); ~~~~~~ ^~~~~~~ /wrkdirs/usr/ports/science/votca/work/votca-1.6/xtp/include/votca/xtp/checkpointreader.h:169:29: warning: implicit conversion loses integer precision: 'hsize_t' (aka 'unsigned long long') to 'Eigen::Index' (aka 'int') [-Wshorten-64-to-32] matrix.derived().resize(matRows, matCols); ~~~~~~ ^~~~~~~ /wrkdirs/usr/ports/science/votca/work/votca-1.6/xtp/include/votca/xtp/checkpointreader.h:45:7: note: in instantiation of function template specialization 'votca::xtp::CheckpointReader::ReadData<Eigen::Matrix<double, 6, 1, 0, 6, 1> >' requested here ReadData(_loc, var, name); ^ /wrkdirs/usr/ports/science/votca/work/votca-1.6/xtp/include/votca/xtp/hist.h:107:4: note: in instantiation of function template specialization 'votca::xtp::CheckpointReader::operator()<Eigen::Matrix<double, 6, 1, 0, 6, 1> >' requested here r(metric.data(), tag); ^ In file included from /wrkdirs/usr/ports/science/votca/work/votca-1.6/xtp/src/libxtp/tools/molpol.cc:20: In file included from /wrkdirs/usr/ports/science/votca/work/votca-1.6/xtp/src/libxtp/tools/molpol.h:25: In file included from /wrkdirs/usr/ports/science/votca/work/votca-1.6/xtp/include/votca/xtp/classicalsegment.h:24: In file included from /wrkdirs/usr/ports/science/votca/work/votca-1.6/xtp/include/votca/xtp/atomcontainer.h:26: In file included from /wrkdirs/usr/ports/science/votca/work/votca-1.6/xtp/include/votca/xtp/checkpoint.h:23: /wrkdirs/usr/ports/science/votca/work/votca-1.6/xtp/include/votca/xtp/checkpointreader.h:169:38: warning: implicit conversion loses integer precision: 'hsize_t' (aka 'unsigned long long') to 'Eigen::Index' (aka 'int') [-Wshorten-64-to-32] matrix.derived().resize(matRows, matCols); ~~~~~~ ^~~~~~~ 13 warnings generated. [263/280] /usr/bin/c++ -DBOOST_UBLAS_NDEBUG -Dvotca_xtp_EXPORTS -Ixtp/src/libxtp -I/wrkdirs/usr/ports/science/votca/work/votca-1.6/xtp/include -Ixtp/include -I/wrkdirs/usr/ports/science/votca/work/votca-1.6/csg/include -I/wrkdirs/usr/ports/science/votca/work/votca-1.6/tools/include -Itools/include -isystem /usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wall -Wextra -Wpedantic -Wshadow -Wconversion -Wno-sign-conversion -fopenmp=libomp -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -fPIC -std=c++14 -MD -MT xtp/src/libxtp/CMakeFiles/votca_xtp.dir/tools/spectrum.cc.o -MF xtp/src/libxtp/CMakeFiles/votca_xtp.dir/tools/spectrum.cc.o.d -o xtp/src/libxtp/CMakeFiles/votca_xtp.dir/tools/spectrum.cc.o -c /wrkdirs/usr/ports/science/votca/work/votca-1.6/xtp/src/libxtp/tools/spectrum.cc In file included from /wrkdirs/usr/ports/science/votca/work/votca-1.6/xtp/src/libxtp/tools/spectrum.cc:20: In file included from /wrkdirs/usr/ports/science/votca/work/votca-1.6/xtp/src/libxtp/tools/spectrum.h:27: In file included from /wrkdirs/usr/ports/science/votca/work/votca-1.6/xtp/include/votca/xtp/qmstate.h:26: In file included from /wrkdirs/usr/ports/science/votca/work/votca-1.6/xtp/include/votca/xtp/checkpointreader.h:27: /wrkdirs/usr/ports/science/votca/work/votca-1.6/xtp/include/votca/xtp/checkpointtable.h:55:14: warning: implicit conversion loses integer precision: 'hsize_t' (aka 'unsigned long long') to 'std::size_t' (aka 'unsigned int') [-Wshorten-64-to-32] _nRows = dims[0]; ~ ^~~~~~~ In file included from /wrkdirs/usr/ports/science/votca/work/votca-1.6/xtp/src/libxtp/tools/spectrum.cc:20: In file included from /wrkdirs/usr/ports/science/votca/work/votca-1.6/xtp/src/libxtp/tools/spectrum.h:27: In file included from /wrkdirs/usr/ports/science/votca/work/votca-1.6/xtp/include/votca/xtp/qmstate.h:26: /wrkdirs/usr/ports/science/votca/work/votca-1.6/xtp/include/votca/xtp/checkpointreader.h:110:46: warning: implicit conversion loses integer precision: 'hsize_t' (aka 'unsigned long long') to 'votca::Index' (aka 'int') [-Wshorten-64-to-32] Index getNumDataSets() const { return _loc.getNumObjs(); } ~~~~~~ ~~~~~^~~~~~~~~~~~ /wrkdirs/usr/ports/science/votca/work/votca-1.6/xtp/include/votca/xtp/checkpointreader.h:235:29: warning: implicit conversion loses integer precision: 'hsize_t' (aka 'unsigned long long') to 'std::__1::vector<char *, std::__1::allocator<char *> >::size_type' (aka 'unsigned int') [-Wshorten-64-to-32] std::vector<char*> temp(dims[0]); ~~~~ ^~~~~~~ /wrkdirs/usr/ports/science/votca/work/votca-1.6/xtp/include/votca/xtp/checkpointreader.h:247:15: warning: implicit conversion loses integer precision: 'hsize_t' (aka 'unsigned long long') to 'std::__1::vector<std::__1::basic_string<char>, std::__1::allocator<std::__1::basic_string<char> > >::size_type' (aka 'unsigned int') [-Wshorten-64-to-32] v.reserve(dims[0]); ~~~~~~~ ^~~~~~~ /wrkdirs/usr/ports/science/votca/work/votca-1.6/xtp/include/votca/xtp/checkpointreader.h:270:27: warning: implicit conversion loses integer precision: 'hsize_t' (aka 'unsigned long long') to 'size_t' (aka 'unsigned int') [-Wshorten-64-to-32] size_t count = parent.getNumObjs(); ~~~~~ ~~~~~~~^~~~~~~~~~~~ /wrkdirs/usr/ports/science/votca/work/votca-1.6/xtp/include/votca/xtp/checkpointreader.h:169:29: warning: implicit conversion loses integer precision: 'hsize_t' (aka 'unsigned long long') to 'Eigen::Index' (aka 'int') [-Wshorten-64-to-32] matrix.derived().resize(matRows, matCols); ~~~~~~ ^~~~~~~ /wrkdirs/usr/ports/science/votca/work/votca-1.6/xtp/include/votca/xtp/checkpointreader.h:258:5: note: in instantiation of function template specialization 'votca::xtp::CheckpointReader::ReadData<Eigen::Matrix<double, -1, 1, 0, -1, 1> >' requested here ReadData(parent, sys.eigenvalues(), "eigenvalues"); ^ /wrkdirs/usr/ports/science/votca/work/votca-1.6/xtp/include/votca/xtp/checkpointreader.h:169:38: warning: implicit conversion loses integer precision: 'hsize_t' (aka 'unsigned long long') to 'Eigen::Index' (aka 'int') [-Wshorten-64-to-32] matrix.derived().resize(matRows, matCols); ~~~~~~ ^~~~~~~ /wrkdirs/usr/ports/science/votca/work/votca-1.6/xtp/include/votca/xtp/checkpointreader.h:169:29: warning: implicit conversion loses integer precision: 'hsize_t' (aka 'unsigned long long') to 'Eigen::Index' (aka 'int') [-Wshorten-64-to-32] matrix.derived().resize(matRows, matCols); ~~~~~~ ^~~~~~~ /wrkdirs/usr/ports/science/votca/work/votca-1.6/xtp/include/votca/xtp/checkpointreader.h:259:5: note: in instantiation of function template specialization 'votca::xtp::CheckpointReader::ReadData<Eigen::Matrix<double, -1, -1, 0, -1, -1> >' requested here ReadData(parent, sys.eigenvectors(), "eigenvectors"); ^ /wrkdirs/usr/ports/science/votca/work/votca-1.6/xtp/include/votca/xtp/checkpointreader.h:169:38: warning: implicit conversion loses integer precision: 'hsize_t' (aka 'unsigned long long') to 'Eigen::Index' (aka 'int') [-Wshorten-64-to-32] matrix.derived().resize(matRows, matCols); ~~~~~~ ^~~~~~~ /wrkdirs/usr/ports/science/votca/work/votca-1.6/xtp/include/votca/xtp/checkpointreader.h:169:29: warning: implicit conversion loses integer precision: 'hsize_t' (aka 'unsigned long long') to 'Eigen::Index' (aka 'int') [-Wshorten-64-to-32] matrix.derived().resize(matRows, matCols); ~~~~~~ ^~~~~~~ /wrkdirs/usr/ports/science/votca/work/votca-1.6/xtp/include/votca/xtp/checkpointreader.h:276:7: note: in instantiation of function template specialization 'votca::xtp::CheckpointReader::ReadData<Eigen::Matrix<double, 3, 1, 0, 3, 1> >' requested here ReadData(parent, vec, "ind" + std::to_string(c)); ^ /wrkdirs/usr/ports/science/votca/work/votca-1.6/xtp/include/votca/xtp/checkpointreader.h:169:38: warning: implicit conversion loses integer precision: 'hsize_t' (aka 'unsigned long long') to 'Eigen::Index' (aka 'int') [-Wshorten-64-to-32] matrix.derived().resize(matRows, matCols); ~~~~~~ ^~~~~~~ 11 warnings generated. [264/280] /usr/bin/c++ -DBOOST_UBLAS_NDEBUG -Dvotca_xtp_EXPORTS -Ixtp/src/libxtp -I/wrkdirs/usr/ports/science/votca/work/votca-1.6/xtp/include -Ixtp/include -I/wrkdirs/usr/ports/science/votca/work/votca-1.6/csg/include -I/wrkdirs/usr/ports/science/votca/work/votca-1.6/tools/include -Itools/include -isystem /usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wall -Wextra -Wpedantic -Wshadow -Wconversion -Wno-sign-conversion -fopenmp=libomp -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -fPIC -std=c++14 -MD -MT xtp/src/libxtp/CMakeFiles/votca_xtp.dir/topology.cc.o -MF xtp/src/libxtp/CMakeFiles/votca_xtp.dir/topology.cc.o.d -o xtp/src/libxtp/CMakeFiles/votca_xtp.dir/topology.cc.o -c /wrkdirs/usr/ports/science/votca/work/votca-1.6/xtp/src/libxtp/topology.cc In file included from /wrkdirs/usr/ports/science/votca/work/votca-1.6/xtp/src/libxtp/topology.cc:20: In file included from /wrkdirs/usr/ports/science/votca/work/votca-1.6/xtp/include/votca/xtp/atom.h:29: In file included from /wrkdirs/usr/ports/science/votca/work/votca-1.6/xtp/include/votca/xtp/checkpointreader.h:27: /wrkdirs/usr/ports/science/votca/work/votca-1.6/xtp/include/votca/xtp/checkpointtable.h:55:14: warning: implicit conversion loses integer precision: 'hsize_t' (aka 'unsigned long long') to 'std::size_t' (aka 'unsigned int') [-Wshorten-64-to-32] _nRows = dims[0]; ~ ^~~~~~~ In file included from /wrkdirs/usr/ports/science/votca/work/votca-1.6/xtp/src/libxtp/topology.cc:20: In file included from /wrkdirs/usr/ports/science/votca/work/votca-1.6/xtp/include/votca/xtp/atom.h:29: /wrkdirs/usr/ports/science/votca/work/votca-1.6/xtp/include/votca/xtp/checkpointreader.h:110:46: warning: implicit conversion loses integer precision: 'hsize_t' (aka 'unsigned long long') to 'votca::Index' (aka 'int') [-Wshorten-64-to-32] Index getNumDataSets() const { return _loc.getNumObjs(); } ~~~~~~ ~~~~~^~~~~~~~~~~~ /wrkdirs/usr/ports/science/votca/work/votca-1.6/xtp/include/votca/xtp/checkpointreader.h:235:29: warning: implicit conversion loses integer precision: 'hsize_t' (aka 'unsigned long long') to 'std::__1::vector<char *, std::__1::allocator<char *> >::size_type' (aka 'unsigned int') [-Wshorten-64-to-32] std::vector<char*> temp(dims[0]); ~~~~ ^~~~~~~ /wrkdirs/usr/ports/science/votca/work/votca-1.6/xtp/include/votca/xtp/checkpointreader.h:247:15: warning: implicit conversion loses integer precision: 'hsize_t' (aka 'unsigned long long') to 'std::__1::vector<std::__1::basic_string<char>, std::__1::allocator<std::__1::basic_string<char> > >::size_type' (aka 'unsigned int') [-Wshorten-64-to-32] v.reserve(dims[0]); ~~~~~~~ ^~~~~~~ /wrkdirs/usr/ports/science/votca/work/votca-1.6/xtp/include/votca/xtp/checkpointreader.h:270:27: warning: implicit conversion loses integer precision: 'hsize_t' (aka 'unsigned long long') to 'size_t' (aka 'unsigned int') [-Wshorten-64-to-32] size_t count = parent.getNumObjs(); ~~~~~ ~~~~~~~^~~~~~~~~~~~ /wrkdirs/usr/ports/science/votca/work/votca-1.6/xtp/include/votca/xtp/checkpointreader.h:169:29: warning: implicit conversion loses integer precision: 'hsize_t' (aka 'unsigned long long') to 'Eigen::Index' (aka 'int') [-Wshorten-64-to-32] matrix.derived().resize(matRows, matCols); ~~~~~~ ^~~~~~~ /wrkdirs/usr/ports/science/votca/work/votca-1.6/xtp/include/votca/xtp/checkpointreader.h:258:5: note: in instantiation of function template specialization 'votca::xtp::CheckpointReader::ReadData<Eigen::Matrix<double, -1, 1, 0, -1, 1> >' requested here ReadData(parent, sys.eigenvalues(), "eigenvalues"); ^ /wrkdirs/usr/ports/science/votca/work/votca-1.6/xtp/include/votca/xtp/checkpointreader.h:169:38: warning: implicit conversion loses integer precision: 'hsize_t' (aka 'unsigned long long') to 'Eigen::Index' (aka 'int') [-Wshorten-64-to-32] matrix.derived().resize(matRows, matCols); ~~~~~~ ^~~~~~~ /wrkdirs/usr/ports/science/votca/work/votca-1.6/xtp/include/votca/xtp/checkpointreader.h:169:29: warning: implicit conversion loses integer precision: 'hsize_t' (aka 'unsigned long long') to 'Eigen::Index' (aka 'int') [-Wshorten-64-to-32] matrix.derived().resize(matRows, matCols); ~~~~~~ ^~~~~~~ /wrkdirs/usr/ports/science/votca/work/votca-1.6/xtp/include/votca/xtp/checkpointreader.h:259:5: note: in instantiation of function template specialization 'votca::xtp::CheckpointReader::ReadData<Eigen::Matrix<double, -1, -1, 0, -1, -1> >' requested here ReadData(parent, sys.eigenvectors(), "eigenvectors"); ^ /wrkdirs/usr/ports/science/votca/work/votca-1.6/xtp/include/votca/xtp/checkpointreader.h:169:38: warning: implicit conversion loses integer precision: 'hsize_t' (aka 'unsigned long long') to 'Eigen::Index' (aka 'int') [-Wshorten-64-to-32] matrix.derived().resize(matRows, matCols); ~~~~~~ ^~~~~~~ /wrkdirs/usr/ports/science/votca/work/votca-1.6/xtp/include/votca/xtp/checkpointreader.h:169:29: warning: implicit conversion loses integer precision: 'hsize_t' (aka 'unsigned long long') to 'Eigen::Index' (aka 'int') [-Wshorten-64-to-32] matrix.derived().resize(matRows, matCols); ~~~~~~ ^~~~~~~ /wrkdirs/usr/ports/science/votca/work/votca-1.6/xtp/include/votca/xtp/checkpointreader.h:276:7: note: in instantiation of function template specialization 'votca::xtp::CheckpointReader::ReadData<Eigen::Matrix<double, 3, 1, 0, 3, 1> >' requested here ReadData(parent, vec, "ind" + std::to_string(c)); ^ /wrkdirs/usr/ports/science/votca/work/votca-1.6/xtp/include/votca/xtp/checkpointreader.h:169:38: warning: implicit conversion loses integer precision: 'hsize_t' (aka 'unsigned long long') to 'Eigen::Index' (aka 'int') [-Wshorten-64-to-32] matrix.derived().resize(matRows, matCols); ~~~~~~ ^~~~~~~ /wrkdirs/usr/ports/science/votca/work/votca-1.6/xtp/include/votca/xtp/checkpointreader.h:169:29: warning: implicit conversion loses integer precision: 'hsize_t' (aka 'unsigned long long') to 'Eigen::Index' (aka 'int') [-Wshorten-64-to-32] matrix.derived().resize(matRows, matCols); ~~~~~~ ^~~~~~~ /wrkdirs/usr/ports/science/votca/work/votca-1.6/xtp/include/votca/xtp/checkpointreader.h:45:7: note: in instantiation of function template specialization 'votca::xtp::CheckpointReader::ReadData<Eigen::Matrix<double, 3, 3, 0, 3, 3> >' requested here ReadData(_loc, var, name); ^ /wrkdirs/usr/ports/science/votca/work/votca-1.6/xtp/src/libxtp/topology.cc:195:4: note: in instantiation of function template specialization 'votca::xtp::CheckpointReader::operator()<Eigen::Matrix<double, 3, 3, 0, 3, 3> >' requested here r(box, "box"); ^ In file included from /wrkdirs/usr/ports/science/votca/work/votca-1.6/xtp/src/libxtp/topology.cc:20: In file included from /wrkdirs/usr/ports/science/votca/work/votca-1.6/xtp/include/votca/xtp/atom.h:29: /wrkdirs/usr/ports/science/votca/work/votca-1.6/xtp/include/votca/xtp/checkpointreader.h:169:38: warning: implicit conversion loses integer precision: 'hsize_t' (aka 'unsigned long long') to 'Eigen::Index' (aka 'int') [-Wshorten-64-to-32] matrix.derived().resize(matRows, matCols); ~~~~~~ ^~~~~~~ 13 warnings generated. [265/280] /usr/bin/c++ -DBOOST_UBLAS_NDEBUG -Dvotca_xtp_EXPORTS -Ixtp/src/libxtp -I/wrkdirs/usr/ports/science/votca/work/votca-1.6/xtp/include -Ixtp/include -I/wrkdirs/usr/ports/science/votca/work/votca-1.6/csg/include -I/wrkdirs/usr/ports/science/votca/work/votca-1.6/tools/include -Itools/include -isystem /usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wall -Wextra -Wpedantic -Wshadow -Wconversion -Wno-sign-conversion -fopenmp=libomp -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -fPIC -std=c++14 -MD -MT xtp/src/libxtp/CMakeFiles/votca_xtp.dir/trustregion.cc.o -MF xtp/src/libxtp/CMakeFiles/votca_xtp.dir/trustregion.cc.o.d -o xtp/src/libxtp/CMakeFiles/votca_xtp.dir/trustregion.cc.o -c /wrkdirs/usr/ports/science/votca/work/votca-1.6/xtp/src/libxtp/trustregion.cc [266/280] /usr/bin/c++ -DBOOST_UBLAS_NDEBUG -Dvotca_xtp_EXPORTS -Ixtp/src/libxtp -I/wrkdirs/usr/ports/science/votca/work/votca-1.6/xtp/include -Ixtp/include -I/wrkdirs/usr/ports/science/votca/work/votca-1.6/csg/include -I/wrkdirs/usr/ports/science/votca/work/votca-1.6/tools/include -Itools/include -isystem /usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wall -Wextra -Wpedantic -Wshadow -Wconversion -Wno-sign-conversion -fopenmp=libomp -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -fPIC -std=c++14 -MD -MT xtp/src/libxtp/CMakeFiles/votca_xtp.dir/version.cc.o -MF xtp/src/libxtp/CMakeFiles/votca_xtp.dir/version.cc.o.d -o xtp/src/libxtp/CMakeFiles/votca_xtp.dir/version.cc.o -c /wrkdirs/usr/ports/science/votca/work/votca-1.6/xtp/src/libxtp/version.cc [267/280] /usr/bin/c++ -DBOOST_UBLAS_NDEBUG -Dvotca_xtp_EXPORTS -Ixtp/src/libxtp -I/wrkdirs/usr/ports/science/votca/work/votca-1.6/xtp/include -Ixtp/include -I/wrkdirs/usr/ports/science/votca/work/votca-1.6/csg/include -I/wrkdirs/usr/ports/science/votca/work/votca-1.6/tools/include -Itools/include -isystem /usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wall -Wextra -Wpedantic -Wshadow -Wconversion -Wno-sign-conversion -fopenmp=libomp -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -fPIC -std=c++14 -MD -MT xtp/src/libxtp/CMakeFiles/votca_xtp.dir/xtpapplication.cc.o -MF xtp/src/libxtp/CMakeFiles/votca_xtp.dir/xtpapplication.cc.o.d -o xtp/src/libxtp/CMakeFiles/votca_xtp.dir/xtpapplication.cc.o -c /wrkdirs/usr/ports/science/votca/work/votca-1.6/xtp/src/libxtp/xtpapplication.cc [268/280] : && /usr/bin/c++ -fPIC -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wall -Wextra -Wpedantic -Wshadow -Wconversion -Wno-sign-conversion -fopenmp=libomp -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -fstack-protector-strong -shared -Wl,-soname,libvotca_xtp.so.7 -o xtp/src/libxtp/libvotca_xtp.so.7 xtp/src/libxtp/CMakeFiles/votca_xtp.dir/IndexParser.cc.o xtp/src/libxtp/CMakeFiles/votca_xtp.dir/anderson_mixing.cc.o xtp/src/libxtp/CMakeFiles/votca_xtp.dir/aobasis.cc.o xtp/src/libxtp/CMakeFiles/votca_xtp.dir/aomatrices/aocoulomb.cc.o xtp/src/libxtp/CMakeFiles/votca_xtp.dir/aomatrices/aodipole.cc.o xtp/src/libxtp/CMakeFiles/votca_xtp.dir/aomatrices/aoecp.cc.o xtp/src/libxtp/CMakeFiles/votca_xtp.dir/aomatrices/aokinetic.cc.o xtp/src/libxtp/CMakeFiles/votca_xtp.dir/aomatrices/aomatrix.cc.o xtp/src/libxtp/CMakeFiles/votca_xtp.dir/aomatrices/aomatrix3d.cc.o xtp/src/libxtp/CMakeFiles/votca_xtp.dir/aomatrices/aomomentum.cc.o xtp/src/libxtp/CMakeFiles/votca_xtp.dir /aomatrices/aomultipole.cc.o xtp/src/libxtp/CMakeFiles/votca_xtp.dir/aomatrices/aooverlap.cc.o xtp/src/libxtp/CMakeFiles/votca_xtp.dir/aomatrices/aoplanewave.cc.o xtp/src/libxtp/CMakeFiles/votca_xtp.dir/aomatrices/aopotential.cc.o xtp/src/libxtp/CMakeFiles/votca_xtp.dir/aomatrices/aotransform.cc.o xtp/src/libxtp/CMakeFiles/votca_xtp.dir/aoshell.cc.o xtp/src/libxtp/CMakeFiles/votca_xtp.dir/atom.cc.o xtp/src/libxtp/CMakeFiles/votca_xtp.dir/basisset.cc.o xtp/src/libxtp/CMakeFiles/votca_xtp.dir/bfgs-trm.cc.o xtp/src/libxtp/CMakeFiles/votca_xtp.dir/bsecoupling.cc.o xtp/src/libxtp/CMakeFiles/votca_xtp.dir/calculators/eanalyze.cc.o xtp/src/libxtp/CMakeFiles/votca_xtp.dir/calculators/einternal.cc.o xtp/src/libxtp/CMakeFiles/votca_xtp.dir/calculators/ianalyze.cc.o xtp/src/libxtp/CMakeFiles/votca_xtp.dir/calculators/kmclifetime.cc.o xtp/src/libxtp/CMakeFiles/votca_xtp.dir/calculators/kmcmultiple.cc.o xtp/src/libxtp/CMakeFiles/votca_xtp.dir/calculators/neighborlist.cc.o xtp/src/libxtp/CMakeFil es/votca_xtp.dir/calculators/vaverage.cc.o x! 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