Date: Mon, 1 Apr 2019 09:29:12 GMT From: pkg-fallout@FreeBSD.org To: sunpoet@FreeBSD.org Cc: pkg-fallout@FreeBSD.org Subject: [exp - 112amd64-default-build-as-user][science/py-h5py] Failed for py36-h5py-2.9.0_1 in configure Message-ID: <201904010929.x319TCNS037971@package19.nyi.freebsd.org>
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You are receiving this mail as a port that you maintain is failing to build on the FreeBSD package build server. Please investigate the failure and submit a PR to fix build. Maintainer: sunpoet@FreeBSD.org Last committer: sunpoet@FreeBSD.org Ident: $FreeBSD: head/science/py-h5py/Makefile 489412 2019-01-05 22:46:53Z sunpoet $ Log URL: http://package19.nyi.freebsd.org/data/112amd64-default-build-as-user/497452/logs/py36-h5py-2.9.0_1.log Build URL: http://package19.nyi.freebsd.org/build.html?mastername=112amd64-default-build-as-user&build=497452 Log: =>> Building science/py-h5py build started at Mon Apr 1 09:28:52 UTC 2019 port directory: /usr/ports/science/py-h5py package name: py36-h5py-2.9.0_1 building for: FreeBSD 112amd64-default-build-as-user-job-23 11.2-RELEASE-p9 FreeBSD 11.2-RELEASE-p9 amd64 maintained by: sunpoet@FreeBSD.org Makefile ident: $FreeBSD: head/science/py-h5py/Makefile 489412 2019-01-05 22:46:53Z sunpoet $ Poudriere version: 3.2.8-3-g02cc9753 Host OSVERSION: 1300009 Jail OSVERSION: 1102000 Job Id: 23 ---Begin Environment--- SHELL=/bin/csh OSVERSION=1102000 UNAME_v=FreeBSD 11.2-RELEASE-p9 UNAME_r=11.2-RELEASE-p9 BLOCKSIZE=K MAIL=/var/mail/root STATUS=1 HOME=/root PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin LOCALBASE=/usr/local USER=root LIBEXECPREFIX=/usr/local/libexec/poudriere POUDRIERE_VERSION=3.2.8-3-g02cc9753 MASTERMNT=/poudriere/data/.m/112amd64-default-build-as-user/ref POUDRIERE_BUILD_TYPE=bulk PACKAGE_BUILDING=yes SAVED_TERM= GID=0 UID=0 PWD=/poudriere/data/.m/112amd64-default-build-as-user/ref/.p/pool P_PORTS_FEATURES=FLAVORS SELECTED_OPTIONS MASTERNAME=112amd64-default-build-as-user SCRIPTPREFIX=/usr/local/share/poudriere OLDPWD=/poudriere/data/.m/112amd64-default-build-as-user/ref/.p SCRIPTPATH=/usr/local/share/poudriere/bulk.sh POUDRIEREPATH=/usr/local/bin/poudriere ---End Environment--- ---Begin Poudriere Port Flags/Env--- PORT_FLAGS= PKGENV= FLAVOR=py36 DEPENDS_ARGS= MAKE_ARGS= FLAVOR=py36 ---End Poudriere Port Flags/Env--- ---Begin OPTIONS List--- ===> The following configuration options are available for py36-h5py-2.9.0_1: DOCS=on: Build and/or install documentation EXAMPLES=on: Build and/or install examples ===> Use 'make config' to modify these settings ---End OPTIONS List--- --MAINTAINER-- sunpoet@FreeBSD.org --End MAINTAINER-- --CONFIGURE_ARGS-- --End CONFIGURE_ARGS-- --CONFIGURE_ENV-- PYTHON="/usr/local/bin/python3.6" XDG_DATA_HOME=/wrkdirs/usr/ports/science/py-h5py/work-py36 XDG_CONFIG_HOME=/wrkdirs/usr/ports/science/py-h5py/work-py36 HOME=/wrkdirs/usr/ports/science/py-h5py/work-py36 TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/science/py-h5py/work-py36/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin SHELL=/bin/sh CONFIG_SHELL=/bin/sh --End CONFIGURE_ENV-- --MAKE_ENV-- XDG_DATA_HOME=/wrkdirs/usr/ports/science/py-h5py/work-py36 XDG_CONFIG_HOME=/wrkdirs/usr/ports/science/py-h5py/work-py36 HOME=/wrkdirs/usr/ports/science/py-h5py/work-py36 TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/science/py-h5py/work-py36/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin NO_PIE=yes MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES LDSHARED="cc -shared" PYTHONDONTWRITEBYTECODE= PYTHONOPTIMIZE= PREFIX=/usr/local LOCALBASE=/usr/local CC="cc" CFLAGS="-O2 -pipe -fstack-protector -fno-strict-aliasing " CPP="cpp" CPPFLAGS="" LDFLAGS=" -fstack-protector " LIBS="" CXX="c++" CXXFLAGS="-O2 -pipe -fstack-protector -fno-strict-aliasing " MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" --End MAKE_ENV-- --PLIST_SUB-- PORTDOCS="" PORTEXAMPLES="" PYTHON_INCLUDEDIR=include/python3.6m PYTHON_LIBDIR=lib/python3.6 PYTHON_PLATFORM=freebsd11 PYTHON_PYOEXTENSION=opt-1.pyc PYTHON_SITELIBDIR=lib/python3.6/site-packages PYTHON_SUFFIX=36 PYTHON_VER=3.6 PYTHON_VERSION=python3.6 PYTHON2="@comment " PYTHON3="" OSREL=11.2 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib DOCSDIR="share/doc/py36-h5py" EXAMPLESDIR="share/examples/py36-h5py" DATADIR="share/py36-h5py" WWWDIR="www/py36-h5py" ETCDIR="etc/py36-h5py" --End PLIST_SUB-- --SUB_LIST-- PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/py36-h5py DOCSDIR=/usr/local/share/doc/py36-h5py EXAMPLESDIR=/usr/local/share/examples/py36-h5py WWWDIR=/usr/local/www/py36-h5py ETCDIR=/usr/local/etc/py36-h5py --End SUB_LIST-- ---Begin make.conf--- USE_PACKAGE_DEPENDS=yes BATCH=yes WRKDIRPREFIX=/wrkdirs PORTSDIR=/usr/ports PACKAGES=/packages DISTDIR=/distfiles FORCE_PACKAGE=yes PACKAGE_BUILDING=yes PACKAGE_BUILDING_FLAVORS=yes #### /usr/local/etc/poudriere.d/make.conf #### # Build ALLOW_MAKE_JOBS_PACKAGES with 2 jobs MAKE_JOBS_NUMBER=2 # stable/10 includes src.conf too late but make.conf is in sys.mk .if ${.CURDIR:M/poudriere/jails/10*/usr/src/usr.bin/xlint*} # Disable build of llib now that head no longer has lint(1) LINT= true .endif #### /usr/ports/Mk/Scripts/ports_env.sh #### _CCVERSION_921dbbb2=FreeBSD clang version 6.0.0 (tags/RELEASE_600/final 326565) (based on LLVM 6.0.0) Target: x86_64-unknown-freebsd11.2 Thread model: posix InstalledDir: /usr/bin _ALTCCVERSION_921dbbb2=none _CXXINTERNAL_acaad9ca=FreeBSD clang version 6.0.0 (tags/RELEASE_600/final 326565) (based on LLVM 6.0.0) Target: x86_64-unknown-freebsd11.2 Thread model: posix InstalledDir: /usr/bin "/usr/bin/ld" "--eh-frame-hdr" "-dynamic-linker" "/libexec/ld-elf.so.1" "--hash-style=both" "--enable-new-dtags" "-o" "a.out" "/usr/lib/crt1.o" "/usr/lib/crti.o" "/usr/lib/crtbegin.o" "-L/usr/lib" "/dev/null" "-lc++" "-lm" "-lgcc" "--as-needed" "-lgcc_s" "--no-as-needed" "-lc" "-lgcc" "--as-needed" "-lgcc_s" "--no-as-needed" "/usr/lib/crtend.o" "/usr/lib/crtn.o" CC_OUTPUT_921dbbb2_58173849=yes CC_OUTPUT_921dbbb2_9bdba57c=yes CC_OUTPUT_921dbbb2_6a4fe7f5=yes CC_OUTPUT_921dbbb2_6bcac02b=yes CC_OUTPUT_921dbbb2_67d20829=yes CC_OUTPUT_921dbbb2_bfa62e83=yes CC_OUTPUT_921dbbb2_f0b4d593=yes CC_OUTPUT_921dbbb2_308abb44=yes CC_OUTPUT_921dbbb2_f00456e5=yes CC_OUTPUT_921dbbb2_65ad290d=yes CC_OUTPUT_921dbbb2_f2776b26=yes CC_OUTPUT_921dbbb2_b2657cc3=yes CC_OUTPUT_921dbbb2_380987f7=yes CC_OUTPUT_921dbbb2_160933ec=yes CC_OUTPUT_921dbbb2_fb62803b=yes _OBJC_CCVERSION_921dbbb2=FreeBSD clang version 6.0.0 (tags/RELEASE_600/final 326565) (based on LLVM 6.0.0) Target: x86_64-unknown-freebsd11.2 Thread model: posix InstalledDir: /usr/bin _OBJC_ALTCCVERSION_921dbbb2=none ARCH=amd64 OPSYS=FreeBSD _OSRELEASE=11.2-RELEASE-p9 OSREL=11.2 OSVERSION=1102000 PYTHONBASE=/usr/local HAVE_COMPAT_IA32_KERN=YES CONFIGURE_MAX_CMD_LEN=262144 HAVE_PORTS_ENV=1 #### Misc Poudriere #### DISABLE_MAKE_JOBS=poudriere ---End make.conf--- --Resource limits-- cpu time (seconds, -t) unlimited file size (512-blocks, -f) unlimited data seg size (kbytes, -d) 33554432 stack size (kbytes, -s) 524288 core file size (512-blocks, -c) unlimited max memory size (kbytes, -m) unlimited locked memory (kbytes, -l) unlimited max user processes (-u) 89999 open files (-n) 1024 virtual mem size (kbytes, -v) unlimited swap limit (kbytes, -w) unlimited socket buffer size (bytes, -b) unlimited pseudo-terminals (-p) unlimited kqueues (-k) unlimited umtx shared locks (-o) unlimited --End resource limits-- =======================<phase: check-sanity >============================ ===> License BSD3CLAUSE accepted by the user =========================================================================== =======================<phase: pkg-depends >============================ ===> py36-h5py-2.9.0_1 depends on file: /usr/local/sbin/pkg - not found ===> Installing existing package /packages/All/pkg-1.10.5_5.txz [112amd64-default-build-as-user-job-23] Installing pkg-1.10.5_5... [112amd64-default-build-as-user-job-23] Extracting pkg-1.10.5_5: .......... done ===> py36-h5py-2.9.0_1 depends on file: /usr/local/sbin/pkg - found ===> Returning to build of py36-h5py-2.9.0_1 =========================================================================== =======================<phase: fetch-depends >============================ =========================================================================== =======================<phase: fetch >============================ ===> License BSD3CLAUSE accepted by the user ===> Fetching all distfiles required by py36-h5py-2.9.0_1 for building =========================================================================== =======================<phase: checksum >============================ ===> License BSD3CLAUSE accepted by the user ===> Fetching all distfiles required by py36-h5py-2.9.0_1 for building => SHA256 Checksum OK for h5py-2.9.0.tar.gz. =========================================================================== =======================<phase: extract-depends>============================ =========================================================================== =======================<phase: extract >============================ ===> License BSD3CLAUSE accepted by the user ===> Fetching all distfiles required by py36-h5py-2.9.0_1 for building ===> Extracting for py36-h5py-2.9.0_1 => SHA256 Checksum OK for h5py-2.9.0.tar.gz. =========================================================================== =======================<phase: patch-depends >============================ =========================================================================== =======================<phase: patch >============================ ===> Patching for py36-h5py-2.9.0_1 =========================================================================== =======================<phase: build-depends >============================ ===> py36-h5py-2.9.0_1 depends on package: py36-pkgconfig>=0 - not found ===> Installing existing package /packages/All/py36-pkgconfig-1.5.0.txz [112amd64-default-build-as-user-job-23] Installing py36-pkgconfig-1.5.0... [112amd64-default-build-as-user-job-23] `-- Installing py36-setuptools-40.8.0... [112amd64-default-build-as-user-job-23] | `-- Installing python36-3.6.8_1... [112amd64-default-build-as-user-job-23] | | `-- Installing gettext-runtime-0.19.8.1_2... [112amd64-default-build-as-user-job-23] | | `-- Installing indexinfo-0.3.1... [112amd64-default-build-as-user-job-23] | | `-- Extracting indexinfo-0.3.1: .... done [112amd64-default-build-as-user-job-23] | | `-- Extracting gettext-runtime-0.19.8.1_2: .......... done [112amd64-default-build-as-user-job-23] | | `-- Installing libffi-3.2.1_3... [112amd64-default-build-as-user-job-23] | | `-- Extracting libffi-3.2.1_3: .......... done [112amd64-default-build-as-user-job-23] | | `-- Installing readline-7.0.5... [112amd64-default-build-as-user-job-23] | | `-- Extracting readline-7.0.5: .......... done [112amd64-default-build-as-user-job-23] | `-- Extracting python36-3.6.8_1: .......... done [112amd64-default-build-as-user-job-23] `-- Extracting py36-setuptools-40.8.0: .......... done [112amd64-default-build-as-user-job-23] Extracting py36-pkgconfig-1.5.0: .......... done Message from python36-3.6.8_1: =========================================================================== Note that some standard Python modules are provided as separate ports as they require additional dependencies. They are available as: py36-gdbm databases/py-gdbm@py36 py36-sqlite3 databases/py-sqlite3@py36 py36-tkinter x11-toolkits/py-tkinter@py36 =========================================================================== Message from py36-setuptools-40.8.0: ******************************************************************* Only /usr/local/bin/easy_install-3.6 script has been installed since Python 3.6 is not the default Python version. ******************************************************************* ===> py36-h5py-2.9.0_1 depends on package: py36-pkgconfig>=0 - found ===> Returning to build of py36-h5py-2.9.0_1 ===> py36-h5py-2.9.0_1 depends on package: py36-numpy>0 - not found ===> Installing existing package /packages/All/py36-numpy-1.16.1,1.txz [112amd64-default-build-as-user-job-23] Installing py36-numpy-1.16.1,1... [112amd64-default-build-as-user-job-23] `-- Installing blas-3.5.0_5... [112amd64-default-build-as-user-job-23] | `-- Installing gcc8-8.3.0_1... [112amd64-default-build-as-user-job-23] | | `-- Installing binutils-2.32,1... [112amd64-default-build-as-user-job-23] | | `-- Extracting binutils-2.32,1: .......... done [112amd64-default-build-as-user-job-23] | | `-- Installing gmp-6.1.2_1... [112amd64-default-build-as-user-job-23] | | `-- Extracting gmp-6.1.2_1: .......... done [112amd64-default-build-as-user-job-23] | | `-- Installing mpc-1.1.0_2... [112amd64-default-build-as-user-job-23] | | `-- Installing mpfr-4.0.2... [112amd64-default-build-as-user-job-23] | | `-- Extracting mpfr-4.0.2: .......... done [112amd64-default-build-as-user-job-23] | | `-- Extracting mpc-1.1.0_2: ......... done [112amd64-default-build-as-user-job-23] | `-- Extracting gcc8-8.3.0_1: .......... done [112amd64-default-build-as-user-job-23] `-- Extracting blas-3.5.0_5: ....... done [112amd64-default-build-as-user-job-23] `-- Installing cblas-1.0_10... [112amd64-default-build-as-user-job-23] `-- Extracting cblas-1.0_10: ......... done [112amd64-default-build-as-user-job-23] `-- Installing lapack-3.5.0_6... [112amd64-default-build-as-user-job-23] `-- Extracting lapack-3.5.0_6: .......... done [112amd64-default-build-as-user-job-23] `-- Installing suitesparse-5.2.0_2... [112amd64-default-build-as-user-job-23] | `-- Installing metis-5.1.0_7... [112amd64-default-build-as-user-job-23] | `-- Extracting metis-5.1.0_7: .......... done [112amd64-default-build-as-user-job-23] | `-- Installing openblas-0.2.20_7,1... [112amd64-default-build-as-user-job-23] | `-- Extracting openblas-0.2.20_7,1: ......... done [112amd64-default-build-as-user-job-23] `-- Extracting suitesparse-5.2.0_2: .......... done [112amd64-default-build-as-user-job-23] Extracting py36-numpy-1.16.1,1: .......... done Message from gcc8-8.3.0_1: To ensure binaries built with this toolchain find appropriate versions of the necessary run-time libraries, you may want to link using -Wl,-rpath=/usr/local/lib/gcc8 For ports leveraging USE_GCC, USES=compiler, or USES=fortran this happens transparently. Message from cblas-1.0_10: ===> NOTICE: The cblas port currently does not have a maintainer. As a result, it is more likely to have unresolved issues, not be up-to-date, or even be removed in the future. To volunteer to maintain this port, please create an issue at: https://bugs.freebsd.org/bugzilla More information about port maintainership is available at: https://www.freebsd.org/doc/en/articles/contributing/ports-contributing.html#maintain-port Message from metis-5.1.0_7: ===> NOTICE: The metis port currently does not have a maintainer. As a result, it is more likely to have unresolved issues, not be up-to-date, or even be removed in the future. To volunteer to maintain this port, please create an issue at: https://bugs.freebsd.org/bugzilla More information about port maintainership is available at: https://www.freebsd.org/doc/en/articles/contributing/ports-contributing.html#maintain-port ===> py36-h5py-2.9.0_1 depends on package: py36-numpy>0 - found ===> Returning to build of py36-h5py-2.9.0_1 ===> py36-h5py-2.9.0_1 depends on package: py36-six>=0 - not found ===> Installing existing package /packages/All/py36-six-1.12.0.txz [112amd64-default-build-as-user-job-23] Installing py36-six-1.12.0... [112amd64-default-build-as-user-job-23] Extracting py36-six-1.12.0: .......... done ===> py36-h5py-2.9.0_1 depends on package: py36-six>=0 - found ===> Returning to build of py36-h5py-2.9.0_1 ===> py36-h5py-2.9.0_1 depends on package: py36-setuptools>0 - found ===> py36-h5py-2.9.0_1 depends on file: /usr/local/bin/python3.6 - found ===> py36-h5py-2.9.0_1 depends on executable: cython-3.6 - not found ===> Installing existing package /packages/All/py36-cython-0.29.txz [112amd64-default-build-as-user-job-23] Installing py36-cython-0.29... [112amd64-default-build-as-user-job-23] Extracting py36-cython-0.29: .......... done ===> py36-h5py-2.9.0_1 depends on executable: cython-3.6 - found ===> Returning to build of py36-h5py-2.9.0_1 ===> py36-h5py-2.9.0_1 depends on package: py36-setuptools>0 - found ===> py36-h5py-2.9.0_1 depends on file: /usr/local/bin/python3.6 - found =========================================================================== =======================<phase: lib-depends >============================ ===> py36-h5py-2.9.0_1 depends on shared library: libhdf5.so - not found ===> Installing existing package /packages/All/hdf5-1.10.4.txz [112amd64-default-build-as-user-job-23] Installing hdf5-1.10.4... [112amd64-default-build-as-user-job-23] `-- Installing hdf-szip-2.1.1... [112amd64-default-build-as-user-job-23] `-- Extracting hdf-szip-2.1.1: .......... done [112amd64-default-build-as-user-job-23] Extracting hdf5-1.10.4: .......... done ===> py36-h5py-2.9.0_1 depends on shared library: libhdf5.so - found (/usr/local/lib/libhdf5.so) ===> Returning to build of py36-h5py-2.9.0_1 =========================================================================== =======================<phase: configure >============================ ===> Configuring for py36-h5py-2.9.0_1 Download error on https://pypi.org/simple/pytest/: [Errno 65] No route to host -- Some packages may not be found! Couldn't find index page for 'pytest' (maybe misspelled?) Download error on https://pypi.org/simple/: [Errno 65] No route to host -- Some packages may not be found! No local packages or working download links found for pytest<4.0.0,>=3.8.2 Traceback (most recent call last): File "<string>", line 1, in <module> File "setup.py", line 168, in <module> cmdclass = CMDCLASS, File "/usr/local/lib/python3.6/site-packages/setuptools/__init__.py", line 144, in setup _install_setup_requires(attrs) File "/usr/local/lib/python3.6/site-packages/setuptools/__init__.py", line 139, in _install_setup_requires dist.fetch_build_eggs(dist.setup_requires) File "/usr/local/lib/python3.6/site-packages/setuptools/dist.py", line 724, in fetch_build_eggs replace_conflicting=True, File "/usr/local/lib/python3.6/site-packages/pkg_resources/__init__.py", line 782, in resolve replace_conflicting=replace_conflicting File "/usr/local/lib/python3.6/site-packages/pkg_resources/__init__.py", line 1065, in best_match return self.obtain(req, installer) File "/usr/local/lib/python3.6/site-packages/pkg_resources/__init__.py", line 1077, in obtain return installer(requirement) File "/usr/local/lib/python3.6/site-packages/setuptools/dist.py", line 791, in fetch_build_egg return cmd.easy_install(req) File "/usr/local/lib/python3.6/site-packages/setuptools/command/easy_install.py", line 673, in easy_install raise DistutilsError(msg) distutils.errors.DistutilsError: Could not find suitable distribution for Requirement.parse('pytest<4.0.0,>=3.8.2') *** Error code 1 Stop. make: stopped in /usr/ports/science/py-h5py
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