Date: Thu, 21 Nov 2019 05:46:10 GMT From: pkg-fallout@FreeBSD.org To: pkg-fallout@FreeBSD.org Subject: [package - 120armv7-quarterly][science/avogadrolibs] Failed for avogadrolibs-1.92.1_1 in build Message-ID: <201911210546.xAL5kA29050201@beefy13.nyi.freebsd.org>
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Maintainer: yuri@FreeBSD.org Last committer: gerald@FreeBSD.org Ident: $FreeBSD: branches/2019Q4/science/avogadrolibs/Makefile 507372 2019-07-26 20:46:53Z gerald $ Log URL: http://beefy13.nyi.freebsd.org/data/120armv7-quarterly/518071/logs/avogadrolibs-1.92.1_1.log Build URL: http://beefy13.nyi.freebsd.org/build.html?mastername=120armv7-quarterly&build=518071 Log: =>> Building science/avogadrolibs build started at Thu Nov 21 05:40:41 UTC 2019 port directory: /usr/ports/science/avogadrolibs package name: avogadrolibs-1.92.1_1 building for: FreeBSD 120armv7-quarterly-job-01 12.0-RELEASE-p12 FreeBSD 12.0-RELEASE-p12 1200086 arm maintained by: yuri@FreeBSD.org Makefile ident: $FreeBSD: branches/2019Q4/science/avogadrolibs/Makefile 507372 2019-07-26 20:46:53Z gerald $ Poudriere version: 3.2.8-5-gc81843e5 Host OSVERSION: 1300047 Jail OSVERSION: 1200086 Job Id: 01 ---Begin Environment--- SHELL=/bin/csh UNAME_p=armv7 UNAME_m=arm ABI_FILE=/usr/lib/crt1.o OSVERSION=1200086 UNAME_v=FreeBSD 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[120armv7-quarterly-job-01] Extracting pkg-1.12.0: .......... done ===> avogadrolibs-1.92.1_1 depends on file: /usr/local/sbin/pkg - found ===> Returning to build of avogadrolibs-1.92.1_1 =========================================================================== =======================<phase: fetch-depends >============================ =========================================================================== =======================<phase: fetch >============================ ===> License GPLv2 accepted by the user ===> Fetching all distfiles required by avogadrolibs-1.92.1_1 for building =========================================================================== =======================<phase: checksum >============================ ===> License GPLv2 accepted by the user ===> Fetching all distfiles required by avogadrolibs-1.92.1_1 for building => SHA256 Checksum OK for OpenChemistry-avogadrolibs-1.92.1_GH0.tar.gz. <snip> [63/458] /nxb-bin/usr/bin/c++ -DAvogadroCore_EXPORTS -I. 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-pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -std=c++11 -MD -MT avogadro/io/CMakeFiles/AvogadroIO.dir/fileformatmanager.cpp.o -MF avogadro/io/CMakeFiles/AvogadroIO.dir/fileformatmanager.cpp.o.d -o avogadro/io/CMakeFiles/AvogadroIO.dir/fileformatmanager.cpp.o -c /wrkdirs/usr/ports/science /avogadrolibs/work/avogadrolibs-1.92.1/avogadro/io/fileformatmanager.cpp In file included from /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.92.1/avogadro/io/fileformatmanager.cpp:29: /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.92.1/avogadro/io/vaspformat.h:90:8: warning: 'read' overrides a member function but is not marked 'override' [-Winconsistent-missing-override] bool read(std::istream& inStream, Core::Molecule& mol); ^ /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.92.1/avogadro/io/fileformat.h:126:16: note: overridden virtual function is here virtual bool read(std::istream& in, Core::Molecule& molecule) = 0; ^ In file included from /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.92.1/avogadro/io/fileformatmanager.cpp:29: /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.92.1/avogadro/io/vaspformat.h:91:8: warning: 'write' overrides a member function but is not marked 'override' [-Winconsistent-missing-override] bool write(std::ostream& outStream, const Core::Molecule& mol); ^ /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.92.1/avogadro/io/fileformat.h:134:16: note: overridden virtual function is here virtual bool write(std::ostream& out, const Core::Molecule& molecule) = 0; ^ 2 warnings generated. [90/458] /nxb-bin/usr/bin/c++ -DAVO_USE_MMTF -DAvogadroIO_EXPORTS -I. -I/wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.92.1 -Iavogadro/core -Iavogadro/io -isystem /usr/local/include/eigen3 -isystem /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.92.1/thirdparty/pugixml -isystem /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.92.1/thirdparty/struct -isystem /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.92.1/thirdparty -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -std=c++11 -MD -MT avogadro/io/CMakeFiles/AvogadroIO.dir/gromacsformat.cpp.o -MF avogadro/io/CMakeFiles/AvogadroIO.dir/gromacsformat.cpp.o.d -o avogadro/io/CMakeFiles/AvogadroIO.dir/gromacsformat.cpp.o -c /wrkdirs/usr/ports/science/avogadrolib s/work/avogadrolibs-1.92.1/avogadro/io/gromacsformat.cpp [91/458] /nxb-bin/usr/bin/c++ -DAVO_USE_MMTF -DAvogadroIO_EXPORTS -I. -I/wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.92.1 -Iavogadro/core -Iavogadro/io -isystem /usr/local/include/eigen3 -isystem /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.92.1/thirdparty/pugixml -isystem /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.92.1/thirdparty/struct -isystem /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.92.1/thirdparty -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -std=c++11 -MD -MT avogadro/io/CMakeFiles/AvogadroIO.dir/mdlformat.cpp.o -MF avogadro/io/CMakeFiles/AvogadroIO.dir/mdlformat.cpp.o.d -o avogadro/io/CMakeFiles/AvogadroIO.dir/mdlformat.cpp.o -c /wrkdirs/usr/ports/science/avogadrolibs/work/avoga drolibs-1.92.1/avogadro/io/mdlformat.cpp [92/458] /nxb-bin/usr/bin/c++ -DAVO_USE_MMTF -DAvogadroIO_EXPORTS -I. -I/wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.92.1 -Iavogadro/core -Iavogadro/io -isystem /usr/local/include/eigen3 -isystem /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.92.1/thirdparty/pugixml -isystem /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.92.1/thirdparty/struct -isystem /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.92.1/thirdparty -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -std=c++11 -MD -MT avogadro/io/CMakeFiles/AvogadroIO.dir/vaspformat.cpp.o -MF avogadro/io/CMakeFiles/AvogadroIO.dir/vaspformat.cpp.o.d -o avogadro/io/CMakeFiles/AvogadroIO.dir/vaspformat.cpp.o -c /wrkdirs/usr/ports/science/avogadrolibs/work/av ogadrolibs-1.92.1/avogadro/io/vaspformat.cpp In file included from /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.92.1/avogadro/io/vaspformat.cpp:17: /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.92.1/avogadro/io/vaspformat.h:90:8: warning: 'read' overrides a member function but is not marked 'override' [-Winconsistent-missing-override] bool read(std::istream& inStream, Core::Molecule& mol); ^ /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.92.1/avogadro/io/fileformat.h:126:16: note: overridden virtual function is here virtual bool read(std::istream& in, Core::Molecule& molecule) = 0; ^ In file included from /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.92.1/avogadro/io/vaspformat.cpp:17: /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.92.1/avogadro/io/vaspformat.h:91:8: warning: 'write' overrides a member function but is not marked 'override' [-Winconsistent-missing-override] bool write(std::ostream& outStream, const Core::Molecule& mol); ^ /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.92.1/avogadro/io/fileformat.h:134:16: note: overridden virtual function is here virtual bool write(std::ostream& out, const Core::Molecule& molecule) = 0; ^ 2 warnings generated. [93/458] /nxb-bin/usr/bin/c++ -DAVO_USE_MMTF -DAvogadroIO_EXPORTS -I. -I/wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.92.1 -Iavogadro/core -Iavogadro/io -isystem /usr/local/include/eigen3 -isystem /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.92.1/thirdparty/pugixml -isystem /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.92.1/thirdparty/struct -isystem /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.92.1/thirdparty -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -std=c++11 -MD -MT avogadro/io/CMakeFiles/AvogadroIO.dir/pdbformat.cpp.o -MF avogadro/io/CMakeFiles/AvogadroIO.dir/pdbformat.cpp.o.d -o avogadro/io/CMakeFiles/AvogadroIO.dir/pdbformat.cpp.o -c /wrkdirs/usr/ports/science/avogadrolibs/work/avoga 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/wrkdirs/usr/ports/science/avogadrolibs/work/avoga drolibs-1.92.1/avogadro/io/xyzformat.cpp [95/458] /nxb-bin/usr/bin/c++ -DAVO_USE_MMTF -DAvogadroIO_EXPORTS -I. -I/wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.92.1 -Iavogadro/core -Iavogadro/io -isystem /usr/local/include/eigen3 -isystem /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.92.1/thirdparty/pugixml -isystem /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.92.1/thirdparty/struct -isystem /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.92.1/thirdparty -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -std=c++11 -MD -MT avogadro/io/CMakeFiles/AvogadroIO.dir/trrformat.cpp.o -MF avogadro/io/CMakeFiles/AvogadroIO.dir/trrformat.cpp.o.d -o avogadro/io/CMakeFiles/AvogadroIO.dir/trrformat.cpp.o -c /wrkdirs/usr/ports/science/avogadrolibs/work/avoga drolibs-1.92.1/avogadro/io/trrformat.cpp [96/458] /nxb-bin/usr/bin/c++ -DAVO_USE_MMTF -DAvogadroIO_EXPORTS -I. -I/wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.92.1 -Iavogadro/core -Iavogadro/io -isystem /usr/local/include/eigen3 -isystem /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.92.1/thirdparty/pugixml -isystem /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.92.1/thirdparty/struct -isystem /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.92.1/thirdparty -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -std=c++11 -MD -MT avogadro/io/CMakeFiles/AvogadroIO.dir/lammpsformat.cpp.o -MF avogadro/io/CMakeFiles/AvogadroIO.dir/lammpsformat.cpp.o.d -o avogadro/io/CMakeFiles/AvogadroIO.dir/lammpsformat.cpp.o -c /wrkdirs/usr/ports/science/avogadrolibs/w ork/avogadrolibs-1.92.1/avogadro/io/lammpsformat.cpp [97/458] /nxb-bin/usr/bin/c++ -DAVO_USE_MMTF -DAvogadroIO_EXPORTS -I. -I/wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.92.1 -Iavogadro/core -Iavogadro/io -isystem /usr/local/include/eigen3 -isystem /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.92.1/thirdparty/pugixml -isystem /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.92.1/thirdparty/struct -isystem /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.92.1/thirdparty -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -std=c++11 -MD -MT avogadro/io/CMakeFiles/AvogadroIO.dir/mmtfformat.cpp.o -MF avogadro/io/CMakeFiles/AvogadroIO.dir/mmtfformat.cpp.o.d -o avogadro/io/CMakeFiles/AvogadroIO.dir/mmtfformat.cpp.o -c /wrkdirs/usr/ports/science/avogadrolibs/work/av ogadrolibs-1.92.1/avogadro/io/mmtfformat.cpp [98/458] : && /nxb-bin/usr/bin/c++ -fPIC -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fstack-protector-strong -shared -Wl,-soname,libAvogadroIO.so.1 -o lib/libAvogadroIO.so.1.92.0 avogadro/io/CMakeFiles/AvogadroIO.dir/cjsonformat.cpp.o avogadro/io/CMakeFiles/AvogadroIO.dir/cmlformat.cpp.o avogadro/io/CMakeFiles/AvogadroIO.dir/dcdformat.cpp.o avogadro/io/CMakeFiles/AvogadroIO.dir/fileformat.cpp.o avogadro/io/CMakeFiles/AvogadroIO.dir/fileformatmanager.cpp.o avogadro/io/CMakeFiles/AvogadroIO.dir/gromacsformat.cpp.o avogadro/io/CMakeFiles/AvogadroIO.dir/mdlformat.cpp.o avogadro/io/CMakeFiles/AvogadroIO.dir/vaspformat.cpp.o avogadro/io/CMakeFiles/AvogadroIO.dir/pdbformat.cpp.o avogadro/io/CMakeFiles/AvogadroIO.dir/xyzformat.cpp.o avogadro/io/CMakeFiles/AvogadroIO.dir/trrformat.cpp.o avogadro/io/CMakeFiles/Av ogadroIO.dir/lammpsformat.cpp.o avogadro/io/CMakeFiles/AvogadroIO.dir/mmtfformat.cpp.o -Wl,-rpath,/wrkdirs/usr/ports/science/avogadrolibs/work/.build/lib: lib/libAvogadroCore.so.1.92.0 thirdparty/struct/libstruct.a && : [99/458] /usr/local/bin/cmake -E cmake_symlink_library lib/libAvogadroIO.so.1.92.0 lib/libAvogadroIO.so.1 lib/libAvogadroIO.so && : [100/458] cd /wrkdirs/usr/ports/science/avogadrolibs/work/.build/avogadro/qtgui && /usr/local/bin/cmake -E cmake_autogen /wrkdirs/usr/ports/science/avogadrolibs/work/.build/avogadro/qtgui/CMakeFiles/AvogadroQtGui_autogen.dir/AutogenInfo.cmake Release [101/458] cd /wrkdirs/usr/ports/science/avogadrolibs/work/.build/avogadro/qtgui && /usr/local/lib/qt5/bin/uic -o /wrkdirs/usr/ports/science/avogadrolibs/work/.build/avogadro/qtgui/ui_customelementdialog.h /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.92.1/avogadro/qtgui/customelementdialog.ui [102/458] cd /wrkdirs/usr/ports/science/avogadrolibs/work/.build/avogadro/qtgui && /usr/local/lib/qt5/bin/rcc --name qtgui --output /wrkdirs/usr/ports/science/avogadrolibs/work/.build/avogadro/qtgui/qrc_qtgui.cpp /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.92.1/avogadro/qtgui/qtgui.qrc [103/458] /nxb-bin/usr/bin/c++ -DAvogadroLibs_LIB_DIR=\"lib\" -DAvogadroQtGui_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DUSE_SPGLIB -Iavogadro/qtgui/AvogadroQtGui_autogen/include -I. -I/wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.92.1 -Iavogadro/core -Iavogadro/io -Iavogadro/quantumio -Iavogadro/rendering -Iavogadro/qtgui -isystem /usr/local/include/eigen3 -isystem /usr/local/include/qt5 -isystem /usr/local/include/qt5/QtWidgets -isystem /usr/local/include/qt5/QtGui -isystem /usr/local/include/qt5/QtCore -isystem /usr/local/lib/qt5/mkspecs/freebsd-clang -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -std=c++11 -MD -MT avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/AvogadroQtGui_autogen/mocs_compilation.cpp.o - MF avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/AvogadroQtGui_autogen/mocs_compilation.cpp.o.d -o avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/AvogadroQtGui_autogen/mocs_compilation.cpp.o -c avogadro/qtgui/AvogadroQtGui_autogen/mocs_compilation.cpp [104/458] /nxb-bin/usr/bin/c++ -DAvogadroLibs_LIB_DIR=\"lib\" -DAvogadroQtGui_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DUSE_SPGLIB -Iavogadro/qtgui/AvogadroQtGui_autogen/include -I. -I/wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.92.1 -Iavogadro/core -Iavogadro/io -Iavogadro/quantumio -Iavogadro/rendering -Iavogadro/qtgui -isystem /usr/local/include/eigen3 -isystem /usr/local/include/qt5 -isystem /usr/local/include/qt5/QtWidgets -isystem /usr/local/include/qt5/QtGui -isystem /usr/local/include/qt5/QtCore -isystem /usr/local/lib/qt5/mkspecs/freebsd-clang -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -std=c++11 -MD -MT avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/backgroundfileformat.cpp.o -MF avogadro/qtgui/ CMakeFiles/AvogadroQtGui.dir/backgroundfileformat.cpp.o.d -o avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/backgroundfileformat.cpp.o -c /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.92.1/avogadro/qtgui/backgroundfileformat.cpp [105/458] /nxb-bin/usr/bin/c++ -DAvogadroLibs_LIB_DIR=\"lib\" -DAvogadroQtGui_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DUSE_SPGLIB -Iavogadro/qtgui/AvogadroQtGui_autogen/include -I. -I/wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.92.1 -Iavogadro/core -Iavogadro/io -Iavogadro/quantumio -Iavogadro/rendering -Iavogadro/qtgui -isystem /usr/local/include/eigen3 -isystem /usr/local/include/qt5 -isystem /usr/local/include/qt5/QtWidgets -isystem /usr/local/include/qt5/QtGui -isystem /usr/local/include/qt5/QtCore -isystem /usr/local/lib/qt5/mkspecs/freebsd-clang -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -std=c++11 -MD -MT avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/containerwidget.cpp.o -MF avogadro/qtgui/CMake Files/AvogadroQtGui.dir/containerwidget.cpp.o.d -o avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/containerwidget.cpp.o -c /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.92.1/avogadro/qtgui/containerwidget.cpp [106/458] /nxb-bin/usr/bin/c++ -DAvogadroLibs_LIB_DIR=\"lib\" -DAvogadroQtGui_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DUSE_SPGLIB -Iavogadro/qtgui/AvogadroQtGui_autogen/include -I. -I/wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.92.1 -Iavogadro/core -Iavogadro/io -Iavogadro/quantumio -Iavogadro/rendering -Iavogadro/qtgui -isystem /usr/local/include/eigen3 -isystem /usr/local/include/qt5 -isystem /usr/local/include/qt5/QtWidgets -isystem /usr/local/include/qt5/QtGui -isystem /usr/local/include/qt5/QtCore -isystem /usr/local/lib/qt5/mkspecs/freebsd-clang -O2 -pipe -fstack-protector-strong -isystem /usr/local/include 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avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/qrc_qtgui.cpp.o -MF avogadro/qtgui/CMakeFiles/ AvogadroQtGui.dir/qrc_qtgui.cpp.o.d -o avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/qrc_qtgui.cpp.o -c avogadro/qtgui/qrc_qtgui.cpp [132/458] : && /nxb-bin/usr/bin/c++ -fPIC -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fstack-protector-strong -shared -Wl,-soname,libAvogadroQtGui.so.1 -o lib/libAvogadroQtGui.so.1.92.0 avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/AvogadroQtGui_autogen/mocs_compilation.cpp.o avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/backgroundfileformat.cpp.o avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/containerwidget.cpp.o avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/customelementdialog.cpp.o avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/elementdetail_p.cpp.o avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/elementitem_p.cpp.o avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/elementtranslator.cpp.o avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/extensionplugin.cpp.o avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/filebrowsewidget.cpp.o a vogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/fileformatdialog.cpp.o avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/generichighlighter.cpp.o avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/hydrogentools.cpp.o avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/interfacescript.cpp.o avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/interfacewidget.cpp.o avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/meshgenerator.cpp.o avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/molecule.cpp.o avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/moleculemodel.cpp.o avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/multiviewwidget.cpp.o avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/periodictablescene_p.cpp.o avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/periodictableview.cpp.o avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/pythonscript.cpp.o avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/rwmolecule.cpp.o avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/sceneplugin.cpp.o avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/scenepluginmodel.cpp.o avogadro/qtgui/CMakeF iles/AvogadroQtGui.dir/scriptloader.cpp.o av! ogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/toolplugin.cpp.o avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/utilities.cpp.o avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/viewfactory.cpp.o avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/qrc_qtgui.cpp.o -Wl,-rpath,/wrkdirs/usr/ports/science/avogadrolibs/work/.build/lib:/usr/local/lib/qt5:/usr/local/lib: lib/libAvogadroIO.so.1.92.0 /usr/local/lib/qt5/libQt5Widgets.so.5.13.0 lib/libAvogadroCore.so.1.92.0 /usr/local/lib/qt5/libQt5Gui.so.5.13.0 /usr/local/lib/qt5/libQt5Core.so.5.13.0 -Wl,-rpath-link,/usr/local/lib && : [133/458] /usr/local/bin/cmake -E cmake_symlink_library lib/libAvogadroQtGui.so.1.92.0 lib/libAvogadroQtGui.so.1 lib/libAvogadroQtGui.so && : [134/458] cd /wrkdirs/usr/ports/science/avogadrolibs/work/.build/avogadro/qtplugins/symmetry && /usr/local/bin/cmake -E cmake_autogen /wrkdirs/usr/ports/science/avogadrolibs/work/.build/avogadro/qtplugins/symmetry/CMakeFiles/SymmetryScene_autogen.dir/AutogenInfo.cmake Release [135/458] /nxb-bin/usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -Iavogadro/qtplugins/symmetry/SymmetryScene_autogen/include -I. -I/wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.92.1 -Iavogadro/core -Iavogadro/io -Iavogadro/quantumio -Iavogadro/rendering -Iavogadro/qtgui -Iavogadro/qtopengl -Iavogadro/molequeue -I/usr/local/lib/cmake/libmsym/../../../include -Iavogadro/qtplugins/symmetry -isystem /usr/local/include/eigen3 -isystem /usr/local/include/qt5 -isystem /usr/local/include/qt5/QtWidgets -isystem /usr/local/include/qt5/QtGui -isystem /usr/local/include/qt5/QtCore -isystem /usr/local/lib/qt5/mkspecs/freebsd-clang -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -std=c++11 -MD -MT avogadro /qtplugins/symmetry/CMakeFiles/SymmetryScene.dir/SymmetryScene_autogen/mocs_compilation.cpp.o -MF avogadro/qtplugins/symmetry/CMakeFiles/SymmetryScene.dir/SymmetryScene_autogen/mocs_compilation.cpp.o.d -o avogadro/qtplugins/symmetry/CMakeFiles/SymmetryScene.dir/SymmetryScene_autogen/mocs_compilation.cpp.o -c avogadro/qtplugins/symmetry/SymmetryScene_autogen/mocs_compilation.cpp [136/458] /nxb-bin/usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -Iavogadro/qtplugins/symmetry/SymmetryScene_autogen/include -I. -I/wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.92.1 -Iavogadro/core -Iavogadro/io -Iavogadro/quantumio -Iavogadro/rendering -Iavogadro/qtgui -Iavogadro/qtopengl -Iavogadro/molequeue -I/usr/local/lib/cmake/libmsym/../../../include -Iavogadro/qtplugins/symmetry -isystem /usr/local/include/eigen3 -isystem /usr/local/include/qt5 -isystem /usr/local/include/qt5/QtWidgets -isystem /usr/local/include/qt5/QtGui -isystem /usr/local/include/qt5/QtCore -isystem /usr/local/lib/qt5/mkspecs/freebsd-clang -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -std=c++11 -MD -MT avogadro /qtplugins/symmetry/CMakeFiles/SymmetryScene.dir/symmetryscene.cpp.o -MF avogadro/qtplugins/symmetry/CMakeFiles/SymmetryScene.dir/symmetryscene.cpp.o.d -o avogadro/qtplugins/symmetry/CMakeFiles/SymmetryScene.dir/symmetryscene.cpp.o -c /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.92.1/avogadro/qtplugins/symmetry/symmetryscene.cpp [137/458] /nxb-bin/usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -Iavogadro/qtplugins/symmetry/SymmetryScene_autogen/include -I. -I/wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.92.1 -Iavogadro/core -Iavogadro/io -Iavogadro/quantumio -Iavogadro/rendering -Iavogadro/qtgui -Iavogadro/qtopengl -Iavogadro/molequeue -I/usr/local/lib/cmake/libmsym/../../../include -Iavogadro/qtplugins/symmetry -isystem /usr/local/include/eigen3 -isystem /usr/local/include/qt5 -isystem /usr/local/include/qt5/QtWidgets -isystem /usr/local/include/qt5/QtGui -isystem /usr/local/include/qt5/QtCore -isystem /usr/local/lib/qt5/mkspecs/freebsd-clang -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -std=c++11 -MD -MT avogadro /qtplugins/symmetry/CMakeFiles/SymmetryScene.dir/SymmetryScenePlugin.cpp.o -MF avogadro/qtplugins/symmetry/CMakeFiles/SymmetryScene.dir/SymmetryScenePlugin.cpp.o.d -o avogadro/qtplugins/symmetry/CMakeFiles/SymmetryScene.dir/SymmetryScenePlugin.cpp.o -c avogadro/qtplugins/symmetry/SymmetryScenePlugin.cpp [138/458] : && /usr/local/bin/cmake -E remove lib/avogadro2/staticplugins/SymmetryScene.a && /nxb-bin/usr/bin/ar qc lib/avogadro2/staticplugins/SymmetryScene.a avogadro/qtplugins/symmetry/CMakeFiles/SymmetryScene.dir/SymmetryScene_autogen/mocs_compilation.cpp.o avogadro/qtplugins/symmetry/CMakeFiles/SymmetryScene.dir/symmetryscene.cpp.o avogadro/qtplugins/symmetry/CMakeFiles/SymmetryScene.dir/SymmetryScenePlugin.cpp.o && /nxb-bin/usr/bin/ranlib lib/avogadro2/staticplugins/SymmetryScene.a && : [139/458] cd /wrkdirs/usr/ports/science/avogadrolibs/work/.build/avogadro/qtplugins/symmetry && /usr/local/bin/cmake -E cmake_autogen /wrkdirs/usr/ports/science/avogadrolibs/work/.build/avogadro/qtplugins/symmetry/CMakeFiles/Symmetry_autogen.dir/AutogenInfo.cmake Release [140/458] cd /wrkdirs/usr/ports/science/avogadrolibs/work/.build/avogadro/qtplugins/symmetry && /usr/local/lib/qt5/bin/uic -o /wrkdirs/usr/ports/science/avogadrolibs/work/.build/avogadro/qtplugins/symmetry/ui_symmetrywidget.h /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.92.1/avogadro/qtplugins/symmetry/symmetrywidget.ui [141/458] /nxb-bin/usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -Iavogadro/qtplugins/symmetry/Symmetry_autogen/include -I. -I/wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.92.1 -Iavogadro/core -Iavogadro/io -Iavogadro/quantumio -Iavogadro/rendering -Iavogadro/qtgui -Iavogadro/qtopengl -Iavogadro/molequeue -I/usr/local/lib/cmake/libmsym/../../../include -Iavogadro/qtplugins/symmetry -isystem /usr/local/include/eigen3 -isystem /usr/local/include/qt5 -isystem /usr/local/include/qt5/QtWidgets -isystem /usr/local/include/qt5/QtGui -isystem /usr/local/include/qt5/QtCore -isystem /usr/local/lib/qt5/mkspecs/freebsd-clang -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -std=c++11 -MD -MT avogadro/qtpl ugins/symmetry/CMakeFiles/Symmetry.dir/Symmetry_autogen/mocs_compilation.cpp.o -MF avogadro/qtplugins/symmetry/CMakeFiles/Symmetry.dir/Symmetry_autogen/mocs_compilation.cpp.o.d -o avogadro/qtplugins/symmetry/CMakeFiles/Symmetry.dir/Symmetry_autogen/mocs_compilation.cpp.o -c avogadro/qtplugins/symmetry/Symmetry_autogen/mocs_compilation.cpp [142/458] /nxb-bin/usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -Iavogadro/qtplugins/symmetry/Symmetry_autogen/include -I. -I/wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.92.1 -Iavogadro/core -Iavogadro/io -Iavogadro/quantumio -Iavogadro/rendering -Iavogadro/qtgui -Iavogadro/qtopengl -Iavogadro/molequeue -I/usr/local/lib/cmake/libmsym/../../../include -Iavogadro/qtplugins/symmetry -isystem /usr/local/include/eigen3 -isystem /usr/local/include/qt5 -isystem /usr/local/include/qt5/QtWidgets -isystem /usr/local/include/qt5/QtGui -isystem /usr/local/include/qt5/QtCore -isystem /usr/local/lib/qt5/mkspecs/freebsd-clang -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -std=c++11 -MD -MT avogadro/qtpl ugins/symmetry/CMakeFiles/Symmetry.dir/symmetry.cpp.o -MF avogadro/qtplugins/symmetry/CMakeFiles/Symmetry.dir/symmetry.cpp.o.d -o avogadro/qtplugins/symmetry/CMakeFiles/Symmetry.dir/symmetry.cpp.o -c /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.92.1/avogadro/qtplugins/symmetry/symmetry.cpp [143/458] /nxb-bin/usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -Iavogadro/qtplugins/symmetry/Symmetry_autogen/include -I. -I/wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.92.1 -Iavogadro/core -Iavogadro/io -Iavogadro/quantumio -Iavogadro/rendering -Iavogadro/qtgui -Iavogadro/qtopengl -Iavogadro/molequeue -I/usr/local/lib/cmake/libmsym/../../../include -Iavogadro/qtplugins/symmetry -isystem /usr/local/include/eigen3 -isystem /usr/local/include/qt5 -isystem /usr/local/include/qt5/QtWidgets -isystem /usr/local/include/qt5/QtGui -isystem /usr/local/include/qt5/QtCore -isystem /usr/local/lib/qt5/mkspecs/freebsd-clang -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -std=c++11 -MD -MT avogadro/qtpl ugins/symmetry/CMakeFiles/Symmetry.dir/symmetrywidget.cpp.o -MF avogadro/qtplugins/symmetry/CMakeFiles/Symmetry.dir/symmetrywidget.cpp.o.d -o avogadro/qtplugins/symmetry/CMakeFiles/Symmetry.dir/symmetrywidget.cpp.o -c /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.92.1/avogadro/qtplugins/symmetry/symmetrywidget.cpp [144/458] /nxb-bin/usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -Iavogadro/qtplugins/symmetry/Symmetry_autogen/include -I. -I/wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.92.1 -Iavogadro/core -Iavogadro/io -Iavogadro/quantumio -Iavogadro/rendering -Iavogadro/qtgui -Iavogadro/qtopengl -Iavogadro/molequeue -I/usr/local/lib/cmake/libmsym/../../../include -Iavogadro/qtplugins/symmetry -isystem /usr/local/include/eigen3 -isystem /usr/local/include/qt5 -isystem /usr/local/include/qt5/QtWidgets -isystem /usr/local/include/qt5/QtGui -isystem /usr/local/include/qt5/QtCore -isystem /usr/local/lib/qt5/mkspecs/freebsd-clang -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -std=c++11 -MD -MT avogadro/qtpl ugins/symmetry/CMakeFiles/Symmetry.dir/operationstablemodel.cpp.o -MF avogadro/qtplugins/symmetry/CMakeFiles/Symmetry.dir/operationstablemodel.cpp.o.d -o avogadro/qtplugins/symmetry/CMakeFiles/Symmetry.dir/operationstablemodel.cpp.o -c /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.92.1/avogadro/qtplugins/symmetry/operationstablemodel.cpp [145/458] /nxb-bin/usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -Iavogadro/qtplugins/symmetry/Symmetry_autogen/include -I. -I/wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.92.1 -Iavogadro/core -Iavogadro/io -Iavogadro/quantumio -Iavogadro/rendering -Iavogadro/qtgui -Iavogadro/qtopengl -Iavogadro/molequeue -I/usr/local/lib/cmake/libmsym/../../../include -Iavogadro/qtplugins/symmetry -isystem /usr/local/include/eigen3 -isystem /usr/local/include/qt5 -isystem /usr/local/include/qt5/QtWidgets -isystem /usr/local/include/qt5/QtGui -isystem /usr/local/include/qt5/QtCore -isystem /usr/local/lib/qt5/mkspecs/freebsd-clang -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -std=c++11 -MD -MT avogadro/qtpl ugins/symmetry/CMakeFiles/Symmetry.dir/richtextdelegate.cpp.o -MF avogadro/qtplugins/symmetry/CMakeFiles/Symmetry.dir/richtextdelegate.cpp.o.d -o avogadro/qtplugins/symmetry/CMakeFiles/Symmetry.dir/richtextdelegate.cpp.o -c /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.92.1/avogadro/qtplugins/symmetry/richtextdelegate.cpp /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.92.1/avogadro/qtplugins/symmetry/richtextdelegate.cpp:25:3: warning: 'QStyleOptionViewItemV4' is deprecated [-Wdeprecated-declarations] QStyleOptionViewItemV4 ov4 = o; ^ /usr/local/include/qt5/QtWidgets/qstyleoption.h:465:9: note: 'QStyleOptionViewItemV4' has been explicitly marked deprecated here typedef Q_DECL_DEPRECATED QStyleOptionViewItem QStyleOptionViewItemV4; ^ /usr/local/include/qt5/QtCore/qcompilerdetection.h:233:45: note: expanded from macro 'Q_DECL_DEPRECATED' # define Q_DECL_DEPRECATED __attribute__ ((__deprecated__)) ^ /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.92.1/avogadro/qtplugins/symmetry/richtextdelegate.cpp:36:3: warning: 'QStyleOptionViewItemV4' is deprecated [-Wdeprecated-declarations] QStyleOptionViewItemV4 ov4 = o; ^ /usr/local/include/qt5/QtWidgets/qstyleoption.h:465:9: note: 'QStyleOptionViewItemV4' has been explicitly marked deprecated here typedef Q_DECL_DEPRECATED QStyleOptionViewItem QStyleOptionViewItemV4; ^ /usr/local/include/qt5/QtCore/qcompilerdetection.h:233:45: note: expanded from macro 'Q_DECL_DEPRECATED' # define Q_DECL_DEPRECATED __attribute__ ((__deprecated__)) ^ 2 warnings generated. [146/458] /nxb-bin/usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -Iavogadro/qtplugins/symmetry/Symmetry_autogen/include -I. -I/wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.92.1 -Iavogadro/core -Iavogadro/io -Iavogadro/quantumio -Iavogadro/rendering -Iavogadro/qtgui -Iavogadro/qtopengl -Iavogadro/molequeue -I/usr/local/lib/cmake/libmsym/../../../include -Iavogadro/qtplugins/symmetry -isystem /usr/local/include/eigen3 -isystem /usr/local/include/qt5 -isystem /usr/local/include/qt5/QtWidgets -isystem /usr/local/include/qt5/QtGui -isystem /usr/local/include/qt5/QtCore -isystem /usr/local/lib/qt5/mkspecs/freebsd-clang -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -std=c++11 -MD -MT avogadro/qtpl ugins/symmetry/CMakeFiles/Symmetry.dir/symmetryutil.cpp.o -MF avogadro/qtplugins/symmetry/CMakeFiles/Symmetry.dir/symmetryutil.cpp.o.d -o avogadro/qtplugins/symmetry/CMakeFiles/Symmetry.dir/symmetryutil.cpp.o -c /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.92.1/avogadro/qtplugins/symmetry/symmetryutil.cpp /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.92.1/avogadro/qtplugins/symmetry/symmetryutil.cpp:32:52: warning: 'trUtf8' is deprecated [-Wdeprecated-declarations] pointGroup = pointGroup.replace(1, 1, QObject::trUtf8("\u221e")); ^ /usr/local/include/qt5/QtCore/qobject.h:119:5: note: 'trUtf8' has been explicitly marked deprecated here Q_OBJECT ^ /usr/local/include/qt5/QtCore/qobjectdefs.h:182:5: note: expanded from macro 'Q_OBJECT' QT_TR_FUNCTIONS \ ^ /usr/local/include/qt5/QtCore/qobjectdefs.h:142:5: note: expanded from macro 'QT_TR_FUNCTIONS' QT_DEPRECATED static inline QString trUtf8(const char *s, const char *c = nullptr, int n = -1) \ ^ /usr/local/include/qt5/QtCore/qglobal.h:292:25: note: expanded from macro 'QT_DEPRECATED' # define QT_DEPRECATED Q_DECL_DEPRECATED ^ /usr/local/include/qt5/QtCore/qcompilerdetection.h:233:45: note: expanded from macro 'Q_DECL_DEPRECATED' # define Q_DECL_DEPRECATED __attribute__ ((__deprecated__)) ^ 1 warning generated. [147/458] /nxb-bin/usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -Iavogadro/qtplugins/symmetry/Symmetry_autogen/include -I. -I/wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.92.1 -Iavogadro/core -Iavogadro/io -Iavogadro/quantumio -Iavogadro/rendering -Iavogadro/qtgui -Iavogadro/qtopengl -Iavogadro/molequeue -I/usr/local/lib/cmake/libmsym/../../../include -Iavogadro/qtplugins/symmetry -isystem /usr/local/include/eigen3 -isystem /usr/local/include/qt5 -isystem /usr/local/include/qt5/QtWidgets -isystem /usr/local/include/qt5/QtGui -isystem /usr/local/include/qt5/QtCore -isystem /usr/local/lib/qt5/mkspecs/freebsd-clang -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -std=c++11 -MD -MT avogadro/qtpl ugins/symmetry/CMakeFiles/Symmetry.dir/SymmetryPlugin.cpp.o -MF avogadro/qtplugins/symmetry/CMakeFiles/Symmetry.dir/SymmetryPlugin.cpp.o.d -o avogadro/qtplugins/symmetry/CMakeFiles/Symmetry.dir/SymmetryPlugin.cpp.o -c avogadro/qtplugins/symmetry/SymmetryPlugin.cpp [148/458] : && /usr/local/bin/cmake -E remove lib/avogadro2/staticplugins/Symmetry.a && /nxb-bin/usr/bin/ar qc lib/avogadro2/staticplugins/Symmetry.a avogadro/qtplugins/symmetry/CMakeFiles/Symmetry.dir/Symmetry_autogen/mocs_compilation.cpp.o avogadro/qtplugins/symmetry/CMakeFiles/Symmetry.dir/symmetry.cpp.o avogadro/qtplugins/symmetry/CMakeFiles/Symmetry.dir/symmetrywidget.cpp.o avogadro/qtplugins/symmetry/CMakeFiles/Symmetry.dir/operationstablemodel.cpp.o avogadro/qtplugins/symmetry/CMakeFiles/Symmetry.dir/richtextdelegate.cpp.o avogadro/qtplugins/symmetry/CMakeFiles/Symmetry.dir/symmetryutil.cpp.o avogadro/qtplugins/symmetry/CMakeFiles/Symmetry.dir/SymmetryPlugin.cpp.o && /nxb-bin/usr/bin/ranlib lib/avogadro2/staticplugins/Symmetry.a && : [149/458] cd /wrkdirs/usr/ports/science/avogadrolibs/work/.build/avogadro/qtplugins/ballandstick && /usr/local/bin/cmake -E cmake_autogen /wrkdirs/usr/ports/science/avogadrolibs/work/.build/avogadro/qtplugins/ballandstick/CMakeFiles/BallStick_autogen.dir/AutogenInfo.cmake Release [150/458] /nxb-bin/usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -Iavogadro/qtplugins/ballandstick/BallStick_autogen/include -I. -I/wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.92.1 -Iavogadro/core -Iavogadro/io -Iavogadro/quantumio -Iavogadro/rendering -Iavogadro/qtgui -Iavogadro/qtopengl -Iavogadro/molequeue -Iavogadro/qtplugins/ballandstick -isystem /usr/local/include/eigen3 -isystem /usr/local/include/qt5 -isystem /usr/local/include/qt5/QtWidgets -isystem /usr/local/include/qt5/QtGui -isystem /usr/local/include/qt5/QtCore -isystem /usr/local/lib/qt5/mkspecs/freebsd-clang -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -std=c++11 -MD -MT avogadro/qtplugins/ballandstick/CMakeFiles/BallStick .dir/BallStick_autogen/mocs_compilation.cpp.o -MF avogadro/qtplugins/ballandstick/CMakeFiles/BallStick.dir/BallStick_autogen/mocs_compilation.cpp.o.d -o avogadro/qtplugins/ballandstick/CMakeFiles/BallStick.dir/BallStick_autogen/mocs_compilation.cpp.o -c avogadro/qtplugins/ballandstick/BallStick_autogen/mocs_compilation.cpp [151/458] /nxb-bin/usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -Iavogadro/qtplugins/ballandstick/BallStick_autogen/include -I. -I/wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.92.1 -Iavogadro/core -Iavogadro/io -Iavogadro/quantumio -Iavogadro/rendering -Iavogadro/qtgui -Iavogadro/qtopengl -Iavogadro/molequeue -Iavogadro/qtplugins/ballandstick -isystem /usr/local/include/eigen3 -isystem /usr/local/include/qt5 -isystem /usr/local/include/qt5/QtWidgets -isystem /usr/local/include/qt5/QtGui -isystem /usr/local/include/qt5/QtCore -isystem /usr/local/lib/qt5/mkspecs/freebsd-clang -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -std=c++11 -MD -MT avogadro/qtplugins/ballandstick/CMakeFiles/BallStick .dir/ballandstick.cpp.o -MF avogadro/qtplugins/ballandstick/CMakeFiles/BallStick.dir/ballandstick.cpp.o.d -o avogadro/qtplugins/ballandstick/CMakeFiles/BallStick.dir/ballandstick.cpp.o -c /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.92.1/avogadro/qtplugins/ballandstick/ballandstick.cpp [152/458] /nxb-bin/usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -Iavogadro/qtplugins/ballandstick/BallStick_autogen/include -I. -I/wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.92.1 -Iavogadro/core -Iavogadro/io -Iavogadro/quantumio -Iavogadro/rendering -Iavogadro/qtgui -Iavogadro/qtopengl -Iavogadro/molequeue -Iavogadro/qtplugins/ballandstick -isystem /usr/local/include/eigen3 -isystem /usr/local/include/qt5 -isystem /usr/local/include/qt5/QtWidgets -isystem /usr/local/include/qt5/QtGui -isystem /usr/local/include/qt5/QtCore -isystem /usr/local/lib/qt5/mkspecs/freebsd-clang -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -std=c++11 -MD -MT avogadro/qtplugins/ballandstick/CMakeFiles/BallStick .dir/BallStickPlugin.cpp.o -MF avogadro/qtplugins/ballandstick/CMakeFiles/BallStick.dir/BallStickPlugin.cpp.o.d -o avogadro/qtplugins/ballandstick/CMakeFiles/BallStick.dir/BallStickPlugin.cpp.o -c avogadro/qtplugins/ballandstick/BallStickPlugin.cpp [153/458] : && /usr/local/bin/cmake -E remove lib/avogadro2/staticplugins/BallStick.a && /nxb-bin/usr/bin/ar qc lib/avogadro2/staticplugins/BallStick.a avogadro/qtplugins/ballandstick/CMakeFiles/BallStick.dir/BallStick_autogen/mocs_compilation.cpp.o avogadro/qtplugins/ballandstick/CMakeFiles/BallStick.dir/ballandstick.cpp.o avogadro/qtplugins/ballandstick/CMakeFiles/BallStick.dir/BallStickPlugin.cpp.o && /nxb-bin/usr/bin/ranlib lib/avogadro2/staticplugins/BallStick.a && : [154/458] cd /wrkdirs/usr/ports/science/avogadrolibs/work/.build/avogadro/qtplugins/licorice && /usr/local/bin/cmake -E cmake_autogen /wrkdirs/usr/ports/science/avogadrolibs/work/.build/avogadro/qtplugins/licorice/CMakeFiles/Licorice_autogen.dir/AutogenInfo.cmake Release [155/458] /nxb-bin/usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -Iavogadro/qtplugins/licorice/Licorice_autogen/include -I. -I/wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.92.1 -Iavogadro/core -Iavogadro/io -Iavogadro/quantumio -Iavogadro/rendering -Iavogadro/qtgui -Iavogadro/qtopengl -Iavogadro/molequeue -Iavogadro/qtplugins/licorice -isystem /usr/local/include/eigen3 -isystem /usr/local/include/qt5 -isystem /usr/local/include/qt5/QtWidgets -isystem /usr/local/include/qt5/QtGui -isystem /usr/local/include/qt5/QtCore -isystem /usr/local/lib/qt5/mkspecs/freebsd-clang -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -std=c++11 -MD -MT avogadro/qtplugins/licorice/CMakeFiles/Licorice.dir/Licorice_ autogen/mocs_compilation.cpp.o -MF avogadro/qtplugins/licorice/CMakeFiles/Licorice.dir/Licorice_autogen/mocs_compilation.cpp.o.d -o avogadro/qtplugins/licorice/CMakeFiles/Licorice.dir/Licorice_autogen/mocs_compilation.cpp.o -c avogadro/qtplugins/licorice/Licorice_autogen/mocs_compilation.cpp [156/458] /nxb-bin/usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -Iavogadro/qtplugins/licorice/Licorice_autogen/include -I. -I/wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.92.1 -Iavogadro/core -Iavogadro/io -Iavogadro/quantumio -Iavogadro/rendering -Iavogadro/qtgui -Iavogadro/qtopengl -Iavogadro/molequeue -Iavogadro/qtplugins/licorice -isystem /usr/local/include/eigen3 -isystem /usr/local/include/qt5 -isystem /usr/local/include/qt5/QtWidgets -isystem /usr/local/include/qt5/QtGui -isystem /usr/local/include/qt5/QtCore -isystem /usr/local/lib/qt5/mkspecs/freebsd-clang -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -std=c++11 -MD -MT avogadro/qtplugins/licorice/CMakeFiles/Licorice.dir/licorice. cpp.o -MF avogadro/qtplugins/licorice/CMakeFiles/Licorice.dir/licorice.cpp.o.d -o avogadro/qtplugins/licorice/CMakeFiles/Licorice.dir/licorice.cpp.o -c /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.92.1/avogadro/qtplugins/licorice/licorice.cpp [157/458] /nxb-bin/usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -Iavogadro/qtplugins/licorice/Licorice_autogen/include -I. -I/wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.92.1 -Iavogadro/core -Iavogadro/io -Iavogadro/quantumio -Iavogadro/rendering -Iavogadro/qtgui -Iavogadro/qtopengl -Iavogadro/molequeue -Iavogadro/qtplugins/licorice -isystem /usr/local/include/eigen3 -isystem /usr/local/include/qt5 -isystem /usr/local/include/qt5/QtWidgets -isystem /usr/local/include/qt5/QtGui -isystem /usr/local/include/qt5/QtCore -isystem /usr/local/lib/qt5/mkspecs/freebsd-clang -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -std=c++11 -MD -MT avogadro/qtplugins/licorice/CMakeFiles/Licorice.dir/LicoriceP lugin.cpp.o -MF avogadro/qtplugins/licorice/CMakeFiles/Licorice.dir/LicoricePlugin.cpp.o.d -o avogadro/qtplugins/licorice/CMakeFiles/Licorice.dir/LicoricePlugin.cpp.o -c avogadro/qtplugins/licorice/LicoricePlugin.cpp [158/458] : && /usr/local/bin/cmake -E remove lib/avogadro2/staticplugins/Licorice.a && /nxb-bin/usr/bin/ar qc lib/avogadro2/staticplugins/Licorice.a avogadro/qtplugins/licorice/CMakeFiles/Licorice.dir/Licorice_autogen/mocs_compilation.cpp.o avogadro/qtplugins/licorice/CMakeFiles/Licorice.dir/licorice.cpp.o avogadro/qtplugins/licorice/CMakeFiles/Licorice.dir/LicoricePlugin.cpp.o && /nxb-bin/usr/bin/ranlib lib/avogadro2/staticplugins/Licorice.a && : [159/458] cd /wrkdirs/usr/ports/science/avogadrolibs/work/.build/avogadro/qtplugins/vanderwaals && /usr/local/bin/cmake -E cmake_autogen /wrkdirs/usr/ports/science/avogadrolibs/work/.build/avogadro/qtplugins/vanderwaals/CMakeFiles/VanDerWaals_autogen.dir/AutogenInfo.cmake Release FAILED: avogadro/qtplugins/vanderwaals/CMakeFiles/VanDerWaals_autogen avogadro/qtplugins/vanderwaals/VanDerWaals_autogen/mocs_compilation.cpp cd /wrkdirs/usr/ports/science/avogadrolibs/work/.build/avogadro/qtplugins/vanderwaals && /usr/local/bin/cmake -E cmake_autogen /wrkdirs/usr/ports/science/avogadrolibs/work/.build/avogadro/qtplugins/vanderwaals/CMakeFiles/VanDerWaals_autogen.dir/AutogenInfo.cmake Release Fatal error 'thread 0xf3d0c200 exits with resources held!' at line 320 in file /usr/local/poudriere/jails/120armv7/usr/src/lib/libthr/thread/thr_exit.c (errno = 0) qemu: uncaught target signal 6 (Abort trap) - core dumped ninja: build stopped: subcommand failed. *** Error code 1 Stop. make: stopped in /usr/ports/science/avogadrolibs
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