Date: Wed, 18 Oct 2017 17:27:31 +0000 From: bugzilla-noreply@freebsd.org To: freebsd-ports-bugs@FreeBSD.org Subject: [Bug 223098] [PATCH] biology/mummer: fix installing scripts and support binaries Message-ID: <bug-223098-13@https.bugs.freebsd.org/bugzilla/>
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https://bugs.freebsd.org/bugzilla/show_bug.cgi?id=3D223098 Bug ID: 223098 Summary: [PATCH] biology/mummer: fix installing scripts and support binaries Product: Ports & Packages Version: Latest Hardware: Any OS: Any Status: New Keywords: patch Severity: Affects Many People Priority: --- Component: Individual Port(s) Assignee: freebsd-ports-bugs@FreeBSD.org Reporter: mzaki@niid.go.jp Keywords: patch Created attachment 187287 --> https://bugs.freebsd.org/bugzilla/attachment.cgi?id=3D187287&action= =3Dedit svn diff for biology/mummer Most scripts doesn't work due to incorrect installation. For example, % nucmer Can't locate Foundation.pm in @INC (you may need to install the Foundation module) (@INC contains: /wrkdirs/usr/ports/biology/mummer/work/MUMmer3.23/scripts /usr/local/lib/perl5/site_perl/mach/5.24 /usr/local/lib/perl5/site_perl /usr/local/lib/perl5/5.24/mach /usr/local/lib/perl5/5.24 .) at /usr/local/bin/nucmer line 19. BEGIN failed--compilation aborted at /usr/local/bin/nucmer line 19. 1) Foundation.pm, distributed within the tarball, is not installed at all. 2) @INC directs /wrkdirs/... i.e. $WRKSRC on the package building system. The attached patch fixes this by * configuring scripts via USES=3Dshebangfix * installing Foundation.pm, an awk script, and support binaries to ${PREFIX}/libexec/mummer The port passed poudriere testport in my environment (10.3 amd64). --=20 You are receiving this mail because: You are the assignee for the bug.=
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