Date: Mon, 16 Jul 2018 18:11:44 +0000 (UTC) From: Yuri Victorovich <yuri@FreeBSD.org> To: ports-committers@freebsd.org, svn-ports-all@freebsd.org, svn-ports-head@freebsd.org Subject: svn commit: r474752 - head/biology/htslib Message-ID: <201807161811.w6GIBi8g050783@repo.freebsd.org>
next in thread | raw e-mail | index | archive | help
Author: yuri Date: Mon Jul 16 18:11:44 2018 New Revision: 474752 URL: https://svnweb.freebsd.org/changeset/ports/474752 Log: biology/htslib: Update 1.6 -> 1.8 Port changes: * Use DISTVERSION * Add USES=localbase instead of CPPFLAGS/LDFLAGS * Move USES=ssl to CURL_USES=ssl * Update WWW PR: 228908 Approved by: maintainer's timeout (cartwright@asu.edu; 35 days) Modified: head/biology/htslib/Makefile head/biology/htslib/distinfo head/biology/htslib/pkg-descr head/biology/htslib/pkg-plist Modified: head/biology/htslib/Makefile ============================================================================== --- head/biology/htslib/Makefile Mon Jul 16 17:07:19 2018 (r474751) +++ head/biology/htslib/Makefile Mon Jul 16 18:11:44 2018 (r474752) @@ -2,7 +2,7 @@ # $FreeBSD$ PORTNAME= htslib -PORTVERSION= 1.6 +DISTVERSION= 1.8 CATEGORIES= biology devel MAINTAINER= cartwright@asu.edu @@ -14,10 +14,9 @@ LICENSE_FILE= ${WRKSRC}/LICENSE TEST_DEPENDS= bash:shells/bash +USES= autoreconf gmake localbase pathfix perl5 shebangfix USE_GITHUB= yes GH_ACCOUNT= samtools - -USES= autoreconf gmake pathfix perl5 shebangfix USE_PERL5= test USE_LDCONFIG= yes GNU_CONFIGURE= yes @@ -28,11 +27,9 @@ OPTIONS_DEFINE= CURL OPTIONS_DEFAULT= CURL CURL_DESC= Use libcurl for network file access (HTTPS and S3 support). +CURL_USES= ssl CURL_LIB_DEPENDS= libcurl.so:ftp/curl CURL_CONFIGURE_ENABLE= libcurl - -CPPFLAGS+= -I${LOCALBASE}/include -LDFLAGS+= -L${LOCALBASE}/lib PLIST_SUB= PORTVERSION="${PORTVERSION}" Modified: head/biology/htslib/distinfo ============================================================================== --- head/biology/htslib/distinfo Mon Jul 16 17:07:19 2018 (r474751) +++ head/biology/htslib/distinfo Mon Jul 16 18:11:44 2018 (r474752) @@ -1,3 +1,3 @@ -TIMESTAMP = 1508301522 -SHA256 (samtools-htslib-1.6_GH0.tar.gz) = 4215c9153c27603cbaaf542f2ec128c5e839380d6df6edd4dbf67955170740c6 -SIZE (samtools-htslib-1.6_GH0.tar.gz) = 1155672 +TIMESTAMP = 1528766078 +SHA256 (samtools-htslib-1.8_GH0.tar.gz) = ad52105c0f9ce6474c8f5d2f208b8e71982436ee1ca5225162932b08aff48b23 +SIZE (samtools-htslib-1.8_GH0.tar.gz) = 1262465 Modified: head/biology/htslib/pkg-descr ============================================================================== --- head/biology/htslib/pkg-descr Mon Jul 16 17:07:19 2018 (r474751) +++ head/biology/htslib/pkg-descr Mon Jul 16 18:11:44 2018 (r474752) @@ -2,4 +2,4 @@ HTSlib is an implementation of a unified C library for formats, such as SAM, CRAM, VCF, and BCF, used for high-throughput sequencing data. It is the core library used by samtools and bcftools. -WWW: http://www.htslib.org/ +WWW: https://www.htslib.org/ Modified: head/biology/htslib/pkg-plist ============================================================================== --- head/biology/htslib/pkg-plist Mon Jul 16 17:07:19 2018 (r474751) +++ head/biology/htslib/pkg-plist Mon Jul 16 18:11:44 2018 (r474752) @@ -32,6 +32,7 @@ lib/libhts.so lib/libhts.so.%%PORTVERSION%% lib/libhts.so.2 libdata/pkgconfig/htslib.pc +man/man1/bgzip.1.gz man/man1/htsfile.1.gz man/man1/tabix.1.gz man/man5/faidx.5.gz
Want to link to this message? Use this URL: <https://mail-archive.FreeBSD.org/cgi/mid.cgi?201807161811.w6GIBi8g050783>