Date: Sun, 16 Dec 2018 07:34:05 +0000 (UTC) From: Yuri Victorovich <yuri@FreeBSD.org> To: ports-committers@freebsd.org, svn-ports-all@freebsd.org, svn-ports-head@freebsd.org Subject: svn commit: r487559 - in head/math: . combblas combblas/files Message-ID: <201812160734.wBG7Y5rL089944@repo.freebsd.org>
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Author: yuri Date: Sun Dec 16 07:34:05 2018 New Revision: 487559 URL: https://svnweb.freebsd.org/changeset/ports/487559 Log: New port: math/combblas: Combinatorial BLAS library: an extensible parallel graph library Added: head/math/combblas/ head/math/combblas/Makefile (contents, props changed) head/math/combblas/distinfo (contents, props changed) head/math/combblas/files/ head/math/combblas/files/patch-include_CombBLAS_PBBS_utils.h (contents, props changed) head/math/combblas/files/patch-include_CombBLAS_mmio.h (contents, props changed) head/math/combblas/pkg-descr (contents, props changed) head/math/combblas/pkg-plist (contents, props changed) Modified: head/math/Makefile Modified: head/math/Makefile ============================================================================== --- head/math/Makefile Sun Dec 16 06:27:36 2018 (r487558) +++ head/math/Makefile Sun Dec 16 07:34:05 2018 (r487559) @@ -175,6 +175,7 @@ SUBDIR += coin-or-data-stochastic SUBDIR += coinmp SUBDIR += coinutils + SUBDIR += combblas SUBDIR += concorde SUBDIR += convertall SUBDIR += coq Added: head/math/combblas/Makefile ============================================================================== --- /dev/null 00:00:00 1970 (empty, because file is newly added) +++ head/math/combblas/Makefile Sun Dec 16 07:34:05 2018 (r487559) @@ -0,0 +1,33 @@ +# $FreeBSD$ + +PORTNAME= CombBLAS +DISTVERSION= 1.6.2 +CATEGORIES= math +MASTER_SITES= https://people.eecs.berkeley.edu/~aydin/${PORTNAME}_FILES/ +DISTNAME= ${PORTNAME}_beta_${DISTVERSION:S/.//:S/./_/} + +MAINTAINER= yuri@FreeBSD.org +COMMENT= Combinatorial BLAS library: an extensible parallel graph library + +LICENSE= MIT +LICENSE_FILE= ${WRKSRC}/LICENSE + +LIB_DEPENDS= libmpi.so:net/mpich +RUN_DEPENDS= ${LOCALBASE}/lib/gcc${GCC_DEFAULT}/libgcc_s.so.1:lang/gcc${GCC_DEFAULT} # because of the link flags induced by mpich + +USES= cmake:outsource localbase:ldflags tar:tgz +USE_LDCONFIG= yes + +CMAKE_ON= BUILD_SHARED_LIBS +LDFLAGS+= ${LOCALBASE}/llvm${LLVM_DEFAULT}/lib/libomp.so + +# use clang from ports because cmake can't find OpenMP with base clang, see https://bugs.freebsd.org/bugzilla/show_bug.cgi?id=223678 +BUILD_DEPENDS+= clang${LLVM_DEFAULT}:devel/llvm${LLVM_DEFAULT} +CPP= clang-cpp${LLVM_DEFAULT} +CC= clang${LLVM_DEFAULT} +CXX= clang++${LLVM_DEFAULT} + +post-extract: + @cd ${WRKSRC}/include && ${RM} .DS_Store ._.DS_Store CombBLAS/._CombBLAS.h + +.include <bsd.port.mk> Added: head/math/combblas/distinfo ============================================================================== --- /dev/null 00:00:00 1970 (empty, because file is newly added) +++ head/math/combblas/distinfo Sun Dec 16 07:34:05 2018 (r487559) @@ -0,0 +1,3 @@ +TIMESTAMP = 1544940787 +SHA256 (CombBLAS_beta_16_2.tgz) = 2a35c725606f18d010c110c66814b6558dae26f6807ac01c843c788fdb5b3ca9 +SIZE (CombBLAS_beta_16_2.tgz) = 1555398 Added: head/math/combblas/files/patch-include_CombBLAS_PBBS_utils.h ============================================================================== --- /dev/null 00:00:00 1970 (empty, because file is newly added) +++ head/math/combblas/files/patch-include_CombBLAS_PBBS_utils.h Sun Dec 16 07:34:05 2018 (r487559) @@ -0,0 +1,11 @@ +--- include/CombBLAS/PBBS/utils.h.orig 2018-12-16 06:18:22 UTC ++++ include/CombBLAS/PBBS/utils.h +@@ -26,7 +26,7 @@ + #include <algorithm> + #include <limits.h> + +-#if defined(__APPLE__) ++#if defined(__APPLE__) || defined(__FreeBSD__) || defined(__DragonFly__) + #define PTCMPXCH " cmpxchgl %2,%1\n" + #else + #define PTCMPXCH " cmpxchgq %2,%1\n" Added: head/math/combblas/files/patch-include_CombBLAS_mmio.h ============================================================================== --- /dev/null 00:00:00 1970 (empty, because file is newly added) +++ head/math/combblas/files/patch-include_CombBLAS_mmio.h Sun Dec 16 07:34:05 2018 (r487559) @@ -0,0 +1,11 @@ +--- include/CombBLAS/mmio.h.orig 2018-12-16 06:16:28 UTC ++++ include/CombBLAS/mmio.h +@@ -13,6 +13,8 @@ + #define MatrixMarketBanner "%%MatrixMarket" + #define MM_MAX_TOKEN_LENGTH 64 + ++#include <sys/types.h> ++ + typedef char MM_typecode[4]; + + char *mm_typecode_to_str(MM_typecode matcode); Added: head/math/combblas/pkg-descr ============================================================================== --- /dev/null 00:00:00 1970 (empty, because file is newly added) +++ head/math/combblas/pkg-descr Sun Dec 16 07:34:05 2018 (r487559) @@ -0,0 +1,12 @@ +The Combinatorial BLAS (CombBLAS) is an extensible distributed-memory parallel +graph library offering a small but powerful set of linear algebra primitives +specifically targeting graph analytics. + +* The Combinatorial BLAS development influences the Graph BLAS standardization + process. +* CombBLAS achieves scalability via its two dimensional distribution and + coarse-grained parallelism. +* CombBLAS powers HipMCL, a highly-scalable parallel implementation of the + Markov Cluster Algorithm (MCL). + +WWW: https://people.eecs.berkeley.edu/~aydin/CombBLAS/html/ Added: head/math/combblas/pkg-plist ============================================================================== --- /dev/null 00:00:00 1970 (empty, because file is newly added) +++ head/math/combblas/pkg-plist Sun Dec 16 07:34:05 2018 (r487559) @@ -0,0 +1,130 @@ +include/CombBLAS/BFSFriends.h +include/CombBLAS/BitMap.h +include/CombBLAS/BitMapCarousel.h +include/CombBLAS/BitMapFringe.h +include/CombBLAS/CombBLAS.h +include/CombBLAS/CommGrid.h +include/CombBLAS/Compare.h +include/CombBLAS/Deleter.h +include/CombBLAS/DenseParMat.cpp +include/CombBLAS/DenseParMat.h +include/CombBLAS/DistEdgeList.cpp +include/CombBLAS/DistEdgeList.h +include/CombBLAS/Exception.h +include/CombBLAS/FileHeader.h +include/CombBLAS/Friends.h +include/CombBLAS/FullyDist.h +include/CombBLAS/FullyDistSpVec.cpp +include/CombBLAS/FullyDistSpVec.h +include/CombBLAS/FullyDistVec.cpp +include/CombBLAS/FullyDistVec.h +include/CombBLAS/HeapEntry.h +include/CombBLAS/Isect.h +include/CombBLAS/LocArr.h +include/CombBLAS/MMmul.h +include/CombBLAS/MPIOp.h +include/CombBLAS/MPIType.h +include/CombBLAS/MemoryPool.h +include/CombBLAS/MultiwayMerge.h +include/CombBLAS/Operations.h +include/CombBLAS/OptBuf.h +include/CombBLAS/PBBS/radixSort.h +include/CombBLAS/PBBS/utils.h +include/CombBLAS/PBBS/utils.h.orig +include/CombBLAS/ParFriends.h +include/CombBLAS/ParFriendsExt.h +include/CombBLAS/PreAllocatedSPA.h +include/CombBLAS/RefGen21.h +include/CombBLAS/SemanticGraph.h +include/CombBLAS/Semirings.h +include/CombBLAS/SequenceHeaps/heap-CLR.h +include/CombBLAS/SequenceHeaps/heap2.h +include/CombBLAS/SequenceHeaps/heap4.h +include/CombBLAS/SequenceHeaps/hold.C +include/CombBLAS/SequenceHeaps/knheap.C +include/CombBLAS/SequenceHeaps/knheap.h +include/CombBLAS/SequenceHeaps/knupdown3.C +include/CombBLAS/SequenceHeaps/knwiggle.C +include/CombBLAS/SequenceHeaps/multiMergeUnrolled.C +include/CombBLAS/SequenceHeaps/util.h +include/CombBLAS/SpCCols.cpp +include/CombBLAS/SpCCols.h +include/CombBLAS/SpDCCols.cpp +include/CombBLAS/SpDCCols.h +include/CombBLAS/SpDefs.h +include/CombBLAS/SpHelper.h +include/CombBLAS/SpImpl.cpp +include/CombBLAS/SpImpl.h +include/CombBLAS/SpMat.cpp +include/CombBLAS/SpMat.h +include/CombBLAS/SpParHelper.cpp +include/CombBLAS/SpParHelper.h +include/CombBLAS/SpParMat.cpp +include/CombBLAS/SpParMat.h +include/CombBLAS/SpTuples.cpp +include/CombBLAS/SpTuples.h +include/CombBLAS/StackEntry.h +include/CombBLAS/ThreadedFriends.h +include/CombBLAS/VecIterator.cpp +include/CombBLAS/VecIterator.h +include/CombBLAS/csc.cpp +include/CombBLAS/csc.h +include/CombBLAS/dcsc.cpp +include/CombBLAS/dcsc.h +include/CombBLAS/hash.hpp +include/CombBLAS/mmio.h +include/CombBLAS/mmio.h.orig +include/CombBLAS/mtSpGEMM.h +include/CombBLAS/myenableif.h +include/CombBLAS/papi_combblas_globals.h +include/CombBLAS/promote.h +include/Tommy/tommychain.h +include/Tommy/tommyhash.c +include/Tommy/tommyhash.h +include/Tommy/tommyhashdyn.c +include/Tommy/tommyhashdyn.h +include/Tommy/tommylist.c +include/Tommy/tommylist.h +include/Tommy/tommytypes.h +include/graph500/generator/apply_permutation_mpi.h +include/graph500/generator/btrd_binomial_distribution.h +include/graph500/generator/graph_generator.h +include/graph500/generator/make_graph.h +include/graph500/generator/mod_arith.h +include/graph500/generator/mod_arith_32bit.h +include/graph500/generator/mod_arith_64bit.h +include/graph500/generator/mod_arith_xmt.h +include/graph500/generator/permutation_gen.h +include/graph500/generator/scramble_edges.h +include/graph500/generator/splittable_mrg.h +include/graph500/generator/utils.h +include/psort/MersenneTwister.h +include/psort/funnel.h +include/psort/funnel.timpl.h +include/psort/psort.h +include/psort/psort_alltoall.h +include/psort/psort_merge.h +include/psort/psort_samplesort.h +include/psort/psort_seqsort.h +include/psort/psort_splitters.h +include/psort/psort_util.h +include/psort/sort.h +include/psort/sort.timpl.h +include/usort/binUtils.h +include/usort/dtypes.h +include/usort/indexHolder.h +include/usort/ompUtils.h +include/usort/ompUtils.tcc +include/usort/parUtils.h +include/usort/parUtils.tcc +include/usort/seqUtils.h +include/usort/seqUtils.tcc +include/usort/sort_profiler.h +lib/cmake/CombBLAS/CombBLASConfig.cmake +lib/cmake/CombBLAS/CombBLASConfigVersion.cmake +lib/cmake/CombBLAS/CombBLASTargets-%%CMAKE_BUILD_TYPE%%.cmake +lib/cmake/CombBLAS/CombBLASTargets.cmake +lib/libCombBLAS.so +lib/libCombBLAS.so.1.16.0 +lib/libGraphGenlib.so +lib/libUsortlib.so
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