Date: Sun, 2 Jun 2019 08:46:53 GMT From: pkg-fallout@FreeBSD.org To: stephen@FreeBSD.org Cc: pkg-fallout@FreeBSD.org Subject: [package - 112amd64-default][math/octave-forge-dicom] Failed for octave-forge-dicom-0.2.2_1 in configure Message-ID: <201906020846.x528krCN086342@beefy9.nyi.freebsd.org>
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You are receiving this mail as a port that you maintain is failing to build on the FreeBSD package build server. Please investigate the failure and submit a PR to fix build. Maintainer: stephen@FreeBSD.org Last committer: stephen@FreeBSD.org Ident: $FreeBSD: head/math/octave-forge-dicom/Makefile 503259 2019-06-01 21:59:13Z stephen $ Log URL: http://beefy9.nyi.freebsd.org/data/112amd64-default/503281/logs/octave-forge-dicom-0.2.2_1.log Build URL: http://beefy9.nyi.freebsd.org/build.html?mastername=112amd64-default&build=503281 Log: =>> Building math/octave-forge-dicom build started at Sun Jun 2 08:45:03 UTC 2019 port directory: /usr/ports/math/octave-forge-dicom package name: octave-forge-dicom-0.2.2_1 building for: FreeBSD 112amd64-default-job-09 11.2-RELEASE-p10 FreeBSD 11.2-RELEASE-p10 amd64 maintained by: stephen@FreeBSD.org Makefile ident: $FreeBSD: head/math/octave-forge-dicom/Makefile 503259 2019-06-01 21:59:13Z stephen $ Poudriere version: 3.2.8-4-g701d8fe1 Host OSVERSION: 1300018 Jail OSVERSION: 1102000 Job Id: 09 ---Begin Environment--- SHELL=/bin/csh OSVERSION=1102000 UNAME_v=FreeBSD 11.2-RELEASE-p10 UNAME_r=11.2-RELEASE-p10 BLOCKSIZE=K MAIL=/var/mail/root STATUS=1 HOME=/root PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin LOCALBASE=/usr/local USER=root LIBEXECPREFIX=/usr/local/libexec/poudriere POUDRIERE_VERSION=3.2.8-4-g701d8fe1 MASTERMNT=/usr/local/poudriere/data/.m/112amd64-default/ref POUDRIERE_BUILD_TYPE=bulk PACKAGE_BUILDING=yes SAVED_TERM= PWD=/usr/local/poudriere/data/.m/112amd64-default/ref/.p/pool P_PORTS_FEATURES=FLAVORS SELECTED_OPTIONS MASTERNAME=112amd64-default SCRIPTPREFIX=/usr/local/share/poudriere OLDPWD=/usr/local/poudriere/data/.m/112amd64-default/ref/.p SCRIPTPATH=/usr/local/share/poudriere/bulk.sh POUDRIEREPATH=/usr/local/bin/poudriere ---End Environment--- ---Begin Poudriere Port Flags/Env--- PORT_FLAGS= PKGENV= FLAVOR= DEPENDS_ARGS= MAKE_ARGS= ---End Poudriere Port Flags/Env--- ---Begin OPTIONS List--- ---End OPTIONS List--- --MAINTAINER-- stephen@FreeBSD.org --End MAINTAINER-- --CONFIGURE_ARGS-- --prefix=/usr/local ${_LATE_CONFIGURE_ARGS} --End CONFIGURE_ARGS-- --CONFIGURE_ENV-- F77="gfortran8" FC="gfortran8" FFLAGS="-O -Wl,-rpath=/usr/local/lib/gcc8" FCFLAGS="-Wl,-rpath=/usr/local/lib/gcc8" MAKE=gmake XDG_DATA_HOME=/wrkdirs/usr/ports/math/octave-forge-dicom/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/math/octave-forge-dicom/work HOME=/wrkdirs/usr/ports/math/octave-forge-dicom/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/math/octave-forge-dicom/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin SHELL=/bin/sh CONFIG_SHELL=/bin/sh ADDR2LINE="/usr/local/bin/addr2line" AR="/usr/local/bin/ar" AS="/usr/local/bin/as" CPPFILT="/usr/local/bin/c++filt" GPROF="/usr/local/bin/gprof" LD="/usr/local/bin/ld" NM="/usr/local/bin/nm" OBJCOPY="/usr/local/bin/objcopy" OBJDUMP="/usr/local/bin/objdump" RANLIB="/usr/local/bin/ranlib" READELF="/usr/local/bin/readelf" SIZE="/usr/local/bin/size" STRINGS="/usr/local/bin/strings" CONFIG_SITE=/usr/ports/Templates/config.site lt_cv_sys_max_cmd_len=262144 --End CONFIGURE_ENV-- --MAKE_ENV-- PACKAGE=/wrkdirs/usr/ports/math/octave-forge-dicom/work/dicom-0.2.2.tar.gz F77="gfortran8" FC="gfortran8" FFLAGS="-O -Wl,-rpath=/usr/local/lib/gcc8" FCFLAGS="-Wl,-rpath=/usr/local/lib/gcc8" XDG_DATA_HOME=/wrkdirs/usr/ports/math/octave-forge-dicom/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/math/octave-forge-dicom/work HOME=/wrkdirs/usr/ports/math/octave-forge-dicom/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/math/octave-forge-dicom/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin NO_PIE=yes MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES ADDR2LINE="/usr/local/bin/addr2line" AR="/usr/local/bin/ar" AS="/usr/local/bin/as" CPPFILT="/usr/local/bin/c++filt" GPROF="/usr/local/bin/gprof" LD="/usr/local/bin/ld" NM="/usr/local/bin/nm" OBJCOPY="/usr/local/bin/objcopy" OBJDUMP="/usr/local/bin/objdump" RANLIB="/usr/local/bin/ranlib" READELF="/usr/local/bin/readelf" SIZE="/usr/local/bin/size" STRINGS="/usr/local/bin/strings" PREFIX=/usr/local LOCALBAS E=/usr/local CC="cc" CFLAGS="-O2 -pipe -fstack-protector-strong -fno-strict-aliasing " CPP="cpp" CPPFLAGS="" LDFLAGS=" -Wl,-rpath=/usr/local/lib/gcc8 -L/usr/local/lib/gcc8 -B/usr/local/bin -fstack-protector-strong " LIBS="" CXX="c++" CXXFLAGS="-O2 -pipe -fstack-protector-strong -fno-strict-aliasing -std=gnu++11 " MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" --End MAKE_ENV-- --PLIST_SUB-- OSREL=11.2 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib DOCSDIR="share/doc/octave-forge-dicom" EXAMPLESDIR="share/examples/octave-forge-dicom" DATADIR="share/octave-forge-dicom" WWWDIR="www/octave-forge-dicom" ETCDIR="etc/octave-forge-dicom" --End PLIST_SUB-- --SUB_LIST-- PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/octave-forge-dicom DOCSDIR=/usr/local/share/doc/octave-forge-dicom EXAMPLESDIR=/usr/local/share/examples/octave-forge-dicom WWWDIR=/usr/local/www/octave-forge-dicom ETCDIR=/usr/local/etc/octave-forge-dicom --End SUB_LIST-- ---Begin make.conf--- USE_PACKAGE_DEPENDS=yes BATCH=yes WRKDIRPREFIX=/wrkdirs PORTSDIR=/usr/ports PACKAGES=/packages DISTDIR=/distfiles PACKAGE_BUILDING=yes PACKAGE_BUILDING_FLAVORS=yes #### /usr/local/etc/poudriere.d/make.conf #### # XXX: We really need this but cannot use it while 'make checksum' does not # try the next mirror on checksum failure. It currently retries the same # failed mirror and then fails rather then trying another. It *does* # try the next if the size is mismatched though. #MASTER_SITE_FREEBSD=yes # Build ALLOW_MAKE_JOBS_PACKAGES with 2 jobs MAKE_JOBS_NUMBER=2 # stable/10 includes src.conf too late but make.conf is in sys.mk .if ${.CURDIR:M/poudriere/jails/10*/usr/src/usr.bin/xlint*} # Disable build of llib now that head no longer has lint(1) LINT= true .endif #### /usr/ports/Mk/Scripts/ports_env.sh #### _CCVERSION_921dbbb2=FreeBSD clang version 6.0.0 (tags/RELEASE_600/final 326565) (based on LLVM 6.0.0) Target: x86_64-unknown-freebsd11.2 Thread model: posix InstalledDir: /usr/bin _ALTCCVERSION_921dbbb2=none _CXXINTERNAL_acaad9ca=FreeBSD clang version 6.0.0 (tags/RELEASE_600/final 326565) (based on LLVM 6.0.0) Target: x86_64-unknown-freebsd11.2 Thread model: posix InstalledDir: /usr/bin "/usr/bin/ld" "--eh-frame-hdr" "-dynamic-linker" "/libexec/ld-elf.so.1" "--hash-style=both" "--enable-new-dtags" "-o" "a.out" "/usr/lib/crt1.o" "/usr/lib/crti.o" "/usr/lib/crtbegin.o" "-L/usr/lib" "/dev/null" "-lc++" "-lm" "-lgcc" "--as-needed" "-lgcc_s" "--no-as-needed" "-lc" "-lgcc" "--as-needed" "-lgcc_s" "--no-as-needed" "/usr/lib/crtend.o" "/usr/lib/crtn.o" CC_OUTPUT_921dbbb2_58173849=yes CC_OUTPUT_921dbbb2_9bdba57c=yes CC_OUTPUT_921dbbb2_6a4fe7f5=yes CC_OUTPUT_921dbbb2_6bcac02b=yes CC_OUTPUT_921dbbb2_67d20829=yes CC_OUTPUT_921dbbb2_bfa62e83=yes CC_OUTPUT_921dbbb2_f0b4d593=yes CC_OUTPUT_921dbbb2_308abb44=yes CC_OUTPUT_921dbbb2_f00456e5=yes CC_OUTPUT_921dbbb2_65ad290d=yes CC_OUTPUT_921dbbb2_f2776b26=yes CC_OUTPUT_921dbbb2_b2657cc3=yes CC_OUTPUT_921dbbb2_380987f7=yes CC_OUTPUT_921dbbb2_160933ec=yes CC_OUTPUT_921dbbb2_fb62803b=yes _OBJC_CCVERSION_921dbbb2=FreeBSD clang version 6.0.0 (tags/RELEASE_600/final 326565) (based on LLVM 6.0.0) Target: x86_64-unknown-freebsd11.2 Thread model: posix InstalledDir: /usr/bin _OBJC_ALTCCVERSION_921dbbb2=none ARCH=amd64 OPSYS=FreeBSD _OSRELEASE=11.2-RELEASE-p10 OSREL=11.2 OSVERSION=1102000 PYTHONBASE=/usr/local HAVE_COMPAT_IA32_KERN=YES CONFIGURE_MAX_CMD_LEN=262144 HAVE_PORTS_ENV=1 #### Misc Poudriere #### GID=0 UID=0 DISABLE_MAKE_JOBS=poudriere ---End make.conf--- --Resource limits-- cpu time (seconds, -t) unlimited file size (512-blocks, -f) unlimited data seg size (kbytes, -d) 33554432 stack size (kbytes, -s) 524288 core file size (512-blocks, -c) unlimited max memory size (kbytes, -m) unlimited locked memory (kbytes, -l) unlimited max user processes (-u) 89999 open files (-n) 1024 virtual mem size (kbytes, -v) unlimited swap limit (kbytes, -w) unlimited socket buffer size (bytes, -b) unlimited pseudo-terminals (-p) unlimited kqueues (-k) unlimited umtx shared locks (-o) unlimited --End resource limits-- =======================<phase: check-sanity >============================ ===> License GPLv3 accepted by the user =========================================================================== =======================<phase: pkg-depends >============================ ===> octave-forge-dicom-0.2.2_1 depends on file: /usr/local/sbin/pkg - not found ===> Installing existing package /packages/All/pkg-1.11.1.txz [112amd64-default-job-09] Installing pkg-1.11.1... [112amd64-default-job-09] Extracting pkg-1.11.1: .......... done ===> octave-forge-dicom-0.2.2_1 depends on file: /usr/local/sbin/pkg - found ===> Returning to build of octave-forge-dicom-0.2.2_1 =========================================================================== =======================<phase: fetch-depends >============================ =========================================================================== =======================<phase: fetch >============================ ===> License GPLv3 accepted by the user ===> Fetching all distfiles required by octave-forge-dicom-0.2.2_1 for building =========================================================================== =======================<phase: checksum >============================ ===> License GPLv3 accepted by the user ===> Fetching all distfiles required by octave-forge-dicom-0.2.2_1 for building => SHA256 Checksum OK for octave-forge/dicom-0.2.2.tar.gz. =========================================================================== =======================<phase: extract-depends>============================ =========================================================================== =======================<phase: extract >============================ ===> License GPLv3 accepted by the user ===> Fetching all distfiles required by octave-forge-dicom-0.2.2_1 for building ===> Extracting for octave-forge-dicom-0.2.2_1 => SHA256 Checksum OK for octave-forge/dicom-0.2.2.tar.gz. =========================================================================== =======================<phase: patch-depends >============================ =========================================================================== =======================<phase: patch >============================ ===> Patching for octave-forge-dicom-0.2.2_1 =========================================================================== =======================<phase: build-depends >============================ ===> octave-forge-dicom-0.2.2_1 depends on executable: octave - not found ===> Installing existing package /packages/All/octave-5.1.0_5.txz [112amd64-default-job-09] Installing octave-5.1.0_5... [112amd64-default-job-09] `-- Installing GraphicsMagick-1.3.31_3,1... [112amd64-default-job-09] | `-- Installing freetype2-2.9.1... [112amd64-default-job-09] | `-- Extracting freetype2-2.9.1: .......... done [112amd64-default-job-09] | `-- Installing gcc8-8.3.0_2... [112amd64-default-job-09] | | `-- Installing binutils-2.32_1,1... [112amd64-default-job-09] | | `-- Installing gettext-runtime-0.19.8.1_2... [112amd64-default-job-09] | | | `-- Installing indexinfo-0.3.1... [112amd64-default-job-09] | | | `-- Extracting indexinfo-0.3.1: .... done [112amd64-default-job-09] | | `-- Extracting gettext-runtime-0.19.8.1_2: .......... done [112amd64-default-job-09] | | `-- Extracting binutils-2.32_1,1: .......... done [112amd64-default-job-09] | | `-- Installing gmp-6.1.2_1... <snip> tcsd_mode="emulator" tpmd_enable="YES" To use TPM, add your_account to '_tss' group like following: # pw groupmod _tss -m your_account Message from dejavu-2.37_1: Make sure that the freetype module is loaded. If it is not, add the following line to the "Modules" section of your X Windows configuration file: Load "freetype" Add the following line to the "Files" section of X Windows configuration file: FontPath "/usr/local/share/fonts/dejavu/" Note: your X Windows configuration file is typically /etc/X11/XF86Config if you are using XFree86, and /etc/X11/xorg.conf if you are using X.Org. Message from perl5-5.28.2: The /usr/bin/perl symlink has been removed starting with Perl 5.20. For shebangs, you should either use: #!/usr/local/bin/perl or #!/usr/bin/env perl The first one will only work if you have a /usr/local/bin/perl, the second will work as long as perl is in PATH. Message from python27-2.7.16_1: =========================================================================== Note that some standard Python modules are provided as separate ports as they require additional dependencies. They are available as: bsddb databases/py-bsddb gdbm databases/py-gdbm sqlite3 databases/py-sqlite3 tkinter x11-toolkits/py-tkinter =========================================================================== Message from libinotify-20180201_1: ============================================================================ Libinotify functionality on FreeBSD is missing support for - detecting a file being moved into or out of a directory within the same filesystem - certain modifications to a symbolic link (rather than the file it points to.) in addition to the known limitations on all platforms using kqueue(2) where various open and close notifications are unimplemented. This means the following regression tests will fail: Directory notifications: IN_MOVED_FROM IN_MOVED_TO Open/close notifications: IN_OPEN IN_CLOSE_NOWRITE IN_CLOSE_WRITE Symbolic Link notifications: IN_DONT_FOLLOW IN_ATTRIB IN_MOVE_SELF IN_DELETE_SELF Kernel patches to address the missing directory and symbolic link notifications are available from: https://github.com/libinotify-kqueue/libinotify-kqueue/tree/master/patches ============================================================================= You might want to consider increasing the kern.maxfiles tunable if you plan to use this library for applications that need to monitor activity of a lot of files. ============================================================================= Message from openjdk8-8.212.4.1: ====================================================================== This OpenJDK implementation requires fdescfs(5) mounted on /dev/fd and procfs(5) mounted on /proc. If you have not done it yet, please do the following: mount -t fdescfs fdesc /dev/fd mount -t procfs proc /proc To make it permanent, you need the following lines in /etc/fstab: fdesc /dev/fd fdescfs rw 0 0 proc /proc procfs rw 0 0 ====================================================================== Message from qtchooser-66: qtchooser is a wrapper that allows selecting whether Qt4 or Qt5 binaries for qmake, moc and other tools will be run when invoking the binaries in $PATH. By default, the Qt5 versions are run. It is possible to change the behavior by setting the QT_SELECT environment variable to "qt4". See qtchooser(1) for more information. Message from qt5-sql-5.12.2: ====================================================================== To enable Qt database support, install the database plugin ports. The following plugin ports are available: - databases/qt5-sqldrivers-ibase InterBase/Firebird - databases/qt5-sqldrivers-mysql MySQL - databases/qt5-sqldrivers-odbc Open Database Connectivity - databases/qt5-sqldrivers-pgsql PostgreSQL - databases/qt5-sqldrivers-sqlite2 SQLite 2 - databases/qt5-sqldrivers-sqlite3 SQLite 3 - databases/qt5-sqldrivers-tds FreeTDS ====================================================================== Message from metis-5.1.0_7: ===> NOTICE: The metis port currently does not have a maintainer. As a result, it is more likely to have unresolved issues, not be up-to-date, or even be removed in the future. To volunteer to maintain this port, please create an issue at: https://bugs.freebsd.org/bugzilla More information about port maintainership is available at: https://www.freebsd.org/doc/en/articles/contributing/ports-contributing.html#maintain-port ===> octave-forge-dicom-0.2.2_1 depends on executable: octave - found ===> Returning to build of octave-forge-dicom-0.2.2_1 ===> octave-forge-dicom-0.2.2_1 depends on executable: gfortran8 - found ===> octave-forge-dicom-0.2.2_1 depends on executable: gmake - not found ===> Installing existing package /packages/All/gmake-4.2.1_3.txz [112amd64-default-job-09] Installing gmake-4.2.1_3... [112amd64-default-job-09] Extracting gmake-4.2.1_3: .......... done ===> octave-forge-dicom-0.2.2_1 depends on executable: gmake - found ===> Returning to build of octave-forge-dicom-0.2.2_1 ===> octave-forge-dicom-0.2.2_1 depends on file: /usr/local/bin/as - found =========================================================================== =======================<phase: lib-depends >============================ ===> octave-forge-dicom-0.2.2_1 depends on shared library: libgdcmCommon.so - not found ===> Installing existing package /packages/All/gdcm-3.0.0.txz [112amd64-default-job-09] Installing gdcm-3.0.0... [112amd64-default-job-09] `-- Installing openjpeg-2.3.1... [112amd64-default-job-09] `-- Extracting openjpeg-2.3.1: .......... done [112amd64-default-job-09] Extracting gdcm-3.0.0: .......... done ===> octave-forge-dicom-0.2.2_1 depends on shared library: libgdcmCommon.so - found (/usr/local/lib/libgdcmCommon.so) ===> Returning to build of octave-forge-dicom-0.2.2_1 ===> octave-forge-dicom-0.2.2_1 depends on shared library: libpcre.so - found (/usr/local/lib/libpcre.so) =========================================================================== =======================<phase: configure >============================ ===> Configuring for octave-forge-dicom-0.2.2_1 configure: loading site script /usr/ports/Templates/config.site checking build system type... amd64-portbld-freebsd11.2 checking host system type... amd64-portbld-freebsd11.2 checking target system type... amd64-portbld-freebsd11.2 checking for a sed that does not truncate output... (cached) /usr/bin/sed checking for uniq... uniq checking for sort... sort checking for mkoctfile... /usr/local/bin/mkoctfile checking whether the C++ compiler works... yes checking for C++ compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C++ compiler... yes checking whether c++ accepts -g... yes checking interpreter get_load_path... yes checking is_map or isstruct... isstruct checking valid_identifier or octave::valid_identifier... octave::valid_identifier checking file_stat or octave::sys::file_stat... octave::sys::file_stat checking for cmake... no checking for GDCM... ./configure: --find-package: not found ./configure: --find-package: not found no configure: WARNING: No GDCM detected using cmake - trying fallback detection checking for gdcm headers path... not found ./configure: 1: Syntax error: Bad fd number ===> Script "configure" failed unexpectedly. Please report the problem to stephen@FreeBSD.org [maintainer] and attach the "/wrkdirs/usr/ports/math/octave-forge-dicom/work/dicom-0.2.2/src/config.log" including the output of the failure of your make command. Also, it might be a good idea to provide an overview of all packages installed on your system (e.g. a /usr/local/sbin/pkg-static info -g -Ea). *** Error code 1 Stop. make: stopped in /usr/ports/math/octave-forge-dicom
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