Date: Fri, 1 Aug 2014 23:54:21 GMT From: pkg-fallout@FreeBSD.org To: bf@FreeBSD.org Cc: pkg-fallout@FreeBSD.org Subject: [package - head-amd64-default][math/libR] Failed for libR-3.0.2_2 in configure Message-ID: <201408012354.s71NsLdo080121@beefy2.isc.freebsd.org>
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You are receiving this mail as a port that you maintain is failing to build on the FreeBSD package build server. Please investigate the failure and submit a PR to fix build. Maintainer: bf@FreeBSD.org Last committer: bapt@FreeBSD.org Ident: $FreeBSD: head/math/libR/Makefile 350130 2014-04-04 14:44:45Z bapt $ Log URL: http://beefy2.isc.freebsd.org/data/head-amd64-default/2014-08-01_05h57m11s/logs/libR-3.0.2_2.log Build URL: http://beefy2.isc.freebsd.org/build.html?mastername=head-amd64-default&build=2014-08-01_05h57m11s Log: ====>> Building math/libR build started at Fri Aug 1 23:53:59 UTC 2014 port directory: /usr/ports/math/libR building for: FreeBSD head-amd64-default-job-20 11.0-CURRENT FreeBSD 11.0-CURRENT r269282 amd64 maintained by: bf@FreeBSD.org Makefile ident: $FreeBSD: head/math/libR/Makefile 350130 2014-04-04 14:44:45Z bapt $ Poudriere version: 3.1-pre Host OSVERSION: 1100027 Jail OSVERSION: 1100028 !!! Jail is newer than host. (Jail: 1100028, Host: 1100027) !!! !!! This is not supported. !!! !!! Host kernel must be same or newer than jail. !!! !!! Expect build failures. !!! ---Begin Environment--- OSVERSION=1100028 UNAME_v=FreeBSD 11.0-CURRENT r269282 UNAME_r=11.0-CURRENT BLOCKSIZE=K MAIL=/var/mail/root STATUS=1 SAVED_TERM= MASTERMNT=/usr/local/poudriere/data/.m/head-amd64-default/ref PKG_EXT=txz PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/games:/usr/local/sbin:/usr/local/bin:/root/bin POUDRIERE_BUILD_TYPE=bulk PKGNG=1 PKGNAME=libR-3.0.2_2 PKG_DELETE=/usr/local/sbin/pkg-static delete -y -f PKG_ADD=/usr/local/sbin/pkg-static add OLDPWD=/root PWD=/usr/local/poudriere/data/.m/head-amd64-default/ref/.p/pool MASTERNAME=head-amd64-default USER=root HOME=/root POUDRIERE_VERSION=3.1-pre LOCALBASE=/usr/local PACKAGE_BUILDING=yes PKG_VERSION=/.p/pkg-static version PKG_BIN=/usr/local/sbin/pkg-static ---End Environment--- ---Begin OPTIONS List--- ===> The following configuration options are available for libR-3.0.2_2: ATLAS=off: Use ATLAS instead of BLAS/LAPACK DOCS=on: Build and/or install documentation ICU=on: Use ICU for collation in multibyte locales MISSING=off: use libmissing rather than libquadmath PCRE_PORT=on: Use devel/pcre instead of the bundled PCRE THREADS=on: Threading support ===> Use 'make config' to modify these settings ---End OPTIONS List--- --CONFIGURE_ARGS-- --enable-memory-profiling rdocdir=/usr/local/share/doc/libR --with-system-bzlib --with-system-zlib --with-blas="no" --with-lapack="no" --with-ICU --with-system-pcre --enable-threads=posix --disable-BLAS-shlib --without-pic --without-x --prefix=/usr/local ${_LATE_CONFIGURE_ARGS} --End CONFIGURE_ARGS-- --CONFIGURE_ENV-- LIBR_LDFLAGS=" -L/usr/local/lib -fno-builtin-coshl -fno-builtin-erfcl -fno-builtin-erfl -fno-builtin-lgammal -fno-builtin-powl -fno-builtin-sinhl -fno-builtin-tanhl -fno-builtin-tgammal -Wl,-rpath=/usr/local/lib/gcc47 -L/usr/local/lib/gcc47 -B/usr/local/bin -Wl,-rpath=/usr/local/lib/gcc47 -L/usr/local/lib/gcc47" OBJC="gcc47" SED="/usr/local/bin/gsed" ac_cv_have_decl_powl=yes ac_cv_have_decl_log1pl=yes FCFLAGS="-O -Wl,-rpath=/usr/local/lib/gcc47" INSTALL_DATA="install -o root -g wheel -m 644" R_LD_LIBRARY_PATH="/usr/local/lib/gcc47:/usr/local/lib" TAR="/usr/bin/tar" XDG_DATA_HOME=/wrkdirs/usr/ports/math/libR/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/math/libR/work HOME=/wrkdirs/usr/ports/math/libR/work TMPDIR="/tmp" SHLIB_LDFLAGS="-fpic" SHLIB_CXXLDFLAGS="-fpic" XDG_DATA_HOME=/wrkdirs/usr/ports/math/libR/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/math/libR/work HOME=/wrkdirs/usr/ports/math/libR/work TMPDIR="/tmp" F77="gfortran47" FC="gfortran47" FFLAGS="-O -Wl,-rpath=/usr/local/l ib/gcc47" FCFLAGS="-Wl,-rpath=/usr/local/lib/gcc47" SHELL=/bin/sh CONFIG_SHELL=/bin/sh ADDR2LINE="/usr/local/bin/addr2line" AR="/usr/local/bin/ar" AS="/usr/local/bin/as" CPPFILT="/usr/local/bin/c++filt" GPROF="/usr/local/bin/gprof" LD="/usr/local/bin/ld" NM="/usr/local/bin/nm" OBJCOPY="/usr/local/bin/objcopy" OBJDUMP="/usr/local/bin/objdump" RANLIB="/usr/local/bin/ranlib" READELF="/usr/local/bin/readelf" SIZE="/usr/local/bin/size" STRINGS="/usr/local/bin/strings" CONFIG_SITE=/usr/ports/Templates/config.site lt_cv_sys_max_cmd_len=262144 --End CONFIGURE_ENV-- --MAKE_ENV-- XDG_DATA_HOME=/wrkdirs/usr/ports/math/libR/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/math/libR/work HOME=/wrkdirs/usr/ports/math/libR/work TMPDIR="/tmp" XDG_DATA_HOME=/wrkdirs/usr/ports/math/libR/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/math/libR/work HOME=/wrkdirs/usr/ports/math/libR/work TMPDIR="/tmp" F77="gfortran47" FC="gfortran47" FFLAGS="-O -Wl,-rpath=/usr/local/lib/gcc47" FCFLAGS="-Wl,-rpath=/usr/local/lib/gcc47" NO_PIE=yes SHELL=/bin/sh NO_LINT=YES ADDR2LINE="/usr/local/bin/addr2line" AR="/usr/local/bin/ar" AS="/usr/local/bin/as" CPPFILT="/usr/local/bin/c++filt" GPROF="/usr/local/bin/gprof" LD="/usr/local/bin/ld" NM="/usr/local/bin/nm" OBJCOPY="/usr/local/bin/objcopy" OBJDUMP="/usr/local/bin/objdump" RANLIB="/usr/local/bin/ranlib" READELF="/usr/local/bin/readelf" SIZE="/usr/local/bin/size" STRINGS="/usr/local/bin/strings" PREFIX=/usr/local LOCALBASE=/usr/local LIBDIR="/usr/lib" CC="gcc47" CFLAGS="-O2 -pipe -fno-builtin-coshl -fno-builtin-erfcl -fno-builtin-erfl -fno-buil tin-lgammal -fno-builtin-powl -fno-builtin-sinhl -fno-builtin-tanhl -fno-builtin-tgammal -Wl,-rpath=/usr/local/lib/gcc47 -fno-strict-aliasing" CPP="cpp47" CPPFLAGS="-I/usr/local/include" LDFLAGS=" -L/usr/local/lib -fno-builtin-coshl -fno-builtin-erfcl -fno-builtin-erfl -fno-builtin-lgammal -fno-builtin-powl -fno-builtin-sinhl -fno-builtin-tanhl -fno-builtin-tgammal -Wl,-rpath=/usr/local/lib/gcc47 -L/usr/local/lib/gcc47 -B/usr/local/bin -Wl,-rpath=/usr/local/lib/gcc47 -L/usr/local/lib/gcc47" LIBS="" CXX="g++47" CXXFLAGS="-O2 -pipe -fno-builtin-coshl -fno-builtin-erfcl -fno-builtin-erfl -fno-builtin-lgammal -fno-builtin-powl -fno-builtin-sinhl -fno-builtin-tanhl -fno-builtin-tgammal -Wl,-rpath=/usr/local/lib/gcc47 -fno-strict-aliasing -Wl,-rpath=/usr/local/lib/gcc47" MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -o root -g wheel -m 555" BSD_INSTALL_LIB="install -s -o root -g wheel -m 444" BSD_INSTALL_SCRIPT="install -o root -g wheel -m 555" BSD_INSTALL_DATA="insta ll -o root -g wheel -m 444" BSD_INSTALL_MA! N="install -o root -g wheel -m 444" --End MAKE_ENV-- --PLIST_SUB-- R_SOVERSION="1" RBLAS_SOVERSION="2" RLAPACK_SOVERSION="4" LAPACK="" NLS="" OSREL=11.0 PREFIX=%D LOCALBASE=/usr/local PORTDOCS="" PORTEXAMPLES="" PORTDATA="" LIB32DIR=lib DOCSDIR="share/doc/libR" EXAMPLESDIR="share/examples/libR" DATADIR="share/libR" WWWDIR="www/libR" ETCDIR="etc/libR" --End PLIST_SUB-- --SUB_LIST-- PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/libR DOCSDIR=/usr/local/share/doc/libR EXAMPLESDIR=/usr/local/share/examples/libR WWWDIR=/usr/local/www/libR ETCDIR=/usr/local/etc/libR --End SUB_LIST-- ---Begin make.conf--- USE_PACKAGE_DEPENDS=yes BATCH=yes WRKDIRPREFIX=/wrkdirs USE_PACKAGE_DEPENDS=yes BATCH=yes WRKDIRPREFIX=/wrkdirs PORTSDIR=/usr/ports PACKAGES=/packages DISTDIR=/distfiles #### /usr/local/etc/poudriere.d/make.conf #### WITH_PKGNG=yes # clean-restricted ran via poudriere.conf NO_RESTRICTED #NO_RESTRICTED=yes DISABLE_MAKE_JOBS=poudriere ---End make.conf--- =======================<phase: check-sanity >============================ ===> License GPLv2 accepted by the user =========================================================================== =======================<phase: pkg-depends >============================ ===> libR-3.0.2_2 depends on file: /usr/local/sbin/pkg - not found ===> Verifying install for /usr/local/sbin/pkg in /usr/ports/ports-mgmt/pkg ===> Installing existing package /packages/All/pkg-1.3.3.txz Message for pkg-1.3.3: If you are upgrading from the old package format, first run: # pkg2ng ===> Returning to build of libR-3.0.2_2 =========================================================================== =======================<phase: fetch-depends >============================ =========================================================================== =======================<phase: fetch >============================ ===> License GPLv2 accepted by the user cd /portdistfiles/; _PATCH_SITES_DEFAULT=" http://distcache.FreeBSD.org/local-distfiles/bf/ http://distcache.us-east.FreeBSD.org/local-distfiles/bf/ http://distcache.eu.FreeBSD.org/local-distfiles/bf/ http://distcache.us-west.FreeBSD.org/local-distfiles/bf/" ; for _file in R-patched-20131112-r64207.diff.bz2; do file=`echo $_file | /usr/bin/sed -E -e 's/:[^-:][^:]*$//'` ; select=`echo ${_file#${file}} | /usr/bin/sed -e 's/^://' -e 's/,/ /g'` ; file=`echo $file | /usr/bin/sed -E -e 's/:-[^:]+$//'` ; force_fetch=false; filebasename=${file##*/}; for afile in ; do afile=${afile##*/}; if [ "x$afile" = "x$filebasename" ]; then force_fetch=true; fi; done; if [ ! -f $file -a ! -f $filebasename -o "$force_fetch" = "true" ]; then if [ -L $file -o -L ${file##*/} ]; then echo "=> /portdistfiles//$file is a broken symlink."; echo "=> Perhaps a filesystem (most likely a CD) isn't mounted?"; echo "=> Please correct this problem and try again."; exit 1; fi; echo "=> $file doesn't seem to exist in /portdistfiles/."; if [ ! -z "$select" ] ; then __PATCH_SITES_TMP= ; for group in $select; do if [ ! -z \${_PATCH_SITES_${group}} ] ; then eval ___PATCH_SITES_TMP="\${_PATCH_SITES_${group}}" ; __PATCH_SITES_TMP="${__PATCH_SITES_TMP} ${___PATCH_SITES_TMP}" ; fi; done; ___PATCH_SITES_TMP= ; SORTED_PATCH_SITES_CMD_TMP="echo `echo ${__PATCH_SITES_TMP} | /usr/bin/awk 'BEGIN { RS = " "; ORS = " "; IGNORECASE = 1 ; gl = "://[^/]*/"; } /:\\/\\/[^\\/]*\\// { good["://[^/]*/"] = good["://[^/]*/"] " " $0 ; next; } { rest = rest " " $0; } END { n=split(gl, gla); for(i=1;i<=n;i++) { print good[gla[i]]; } print rest; }'` http://distcache.FreeBSD.org/ports-distfiles/" ; else SORTED_PATCH_SITES_CMD_TMP="cd /usr/ports/math/libR && make patch-sites-DEFAULT" ; fi; sites_remaining=0; sites="`eval $SORTED_PATCH_SITES_CMD_TMP`"; for site in ${sites}; do sites_remaining=$((${sites_remaining} + 1)); done; for site in ${sites}; do sites_remaining=$((${sites_remaining} - 1)); echo "=> Attempting to fetch ${site}$! {file}"; CKSIZE=`alg=SIZE; if [ \( -n "" -a -n "" \) -o ! -f "/usr/ports/math/libR/../R/distinfo" ]; then exit; fi; DIR=; /usr/bin/awk -v alg=$alg -v file=${DIR:+$DIR/}${file} '$1 == alg && $2 == "(" file ")" {print $4}' /usr/ports/math/libR/../R/distinfo`; case ${file} in */*) /bin/mkdir -p ${file%/*}; args="-o ${file} ${site}${file}";; *) args=${site}${file};; esac; if /usr/bin/env SSL_NO_VERIFY_PEER=1 SSL_NO_VERIFY_HOSTNAME=1 /usr/bin/fetch -Fpr ${CKSIZE:+-S $CKSIZE} ${args} ; then actual_size=`stat -f %z "${file}"`; if [ -n "" ] || [ -z "${CKSIZE}" ] || [ ${actual_size} -eq ${CKSIZE} ]; then continue 2; else echo "=> Fetched file size mismatch (expected ${CKSIZE}, actual ${actual_size})"; if [ ${sites_remaining} -gt 1 ]; then echo "=> Trying next site"; /bin/rm -f -f ${file}; fi; fi; fi; done; echo "=> Couldn't fetch it - please try to retrieve this"; echo "=> port manually into /portdistfiles/ and try again."; exit 1; fi; done ===> Fetching all distfiles required by libR-3.0.2_2 for building =========================================================================== =======================<phase: checksum >============================ ===> License GPLv2 accepted by the user cd /portdistfiles/; _PATCH_SITES_DEFAULT=" http://distcache.FreeBSD.org/local-distfiles/bf/ http://distcache.us-east.FreeBSD.org/local-distfiles/bf/ http://distcache.eu.FreeBSD.org/local-distfiles/bf/ http://distcache.us-west.FreeBSD.org/local-distfiles/bf/" ; for _file in R-patched-20131112-r64207.diff.bz2; do file=`echo $_file | /usr/bin/sed -E -e 's/:[^-:][^:]*$//'` ; select=`echo ${_file#${file}} | /usr/bin/sed -e 's/^://' -e 's/,/ /g'` ; file=`echo $file | /usr/bin/sed -E -e 's/:-[^:]+$//'` ; force_fetch=false; filebasename=${file##*/}; for afile in ; do afile=${afile##*/}; if [ "x$afile" = "x$filebasename" ]; then force_fetch=true; fi; done; if [ ! -f $file -a ! -f $filebasename -o "$force_fetch" = "true" ]; then if [ -L $file -o -L ${file##*/} ]; then echo "=> /portdistfiles//$file is a broken symlink."; echo "=> Perhaps a filesystem (most likely a CD) isn't mounted?"; echo "=> Please correct this problem and try again."; exit 1; fi; echo "=> $file doesn't seem to exist in /portdistfiles/."; if [ ! -z "$select" ] ; then __PATCH_SITES_TMP= ; for group in $select; do if [ ! -z \${_PATCH_SITES_${group}} ] ; then eval ___PATCH_SITES_TMP="\${_PATCH_SITES_${group}}" ; __PATCH_SITES_TMP="${__PATCH_SITES_TMP} ${___PATCH_SITES_TMP}" ; fi; done; ___PATCH_SITES_TMP= ; SORTED_PATCH_SITES_CMD_TMP="echo `echo ${__PATCH_SITES_TMP} | /usr/bin/awk 'BEGIN { RS = " "; ORS = " "; IGNORECASE = 1 ; gl = "://[^/]*/"; } /:\\/\\/[^\\/]*\\// { good["://[^/]*/"] = good["://[^/]*/"] " " $0 ; next; } { rest = rest " " $0; } END { n=split(gl, gla); for(i=1;i<=n;i++) { print good[gla[i]]; } print rest; }'` http://distcache.FreeBSD.org/ports-distfiles/" ; else SORTED_PATCH_SITES_CMD_TMP="cd /usr/ports/math/libR && make patch-sites-DEFAULT" ; fi; sites_remaining=0; sites="`eval $SORTED_PATCH_SITES_CMD_TMP`"; for site in ${sites}; do sites_remaining=$((${sites_remaining} + 1)); done; for site in ${sites}; do sites_remaining=$((${sites_remaining} - 1)); echo "=> Attempting to fetch ${site}$! {file}"; CKSIZE=`alg=SIZE; if [ \( -n "" -a -n "" \) -o ! -f "/usr/ports/math/libR/../R/distinfo" ]; then exit; fi; DIR=; /usr/bin/awk -v alg=$alg -v file=${DIR:+$DIR/}${file} '$1 == alg && $2 == "(" file ")" {print $4}' /usr/ports/math/libR/../R/distinfo`; case ${file} in */*) /bin/mkdir -p ${file%/*}; args="-o ${file} ${site}${file}";; *) args=${site}${file};; esac; if /usr/bin/env SSL_NO_VERIFY_PEER=1 SSL_NO_VERIFY_HOSTNAME=1 /usr/bin/fetch -Fpr ${CKSIZE:+-S $CKSIZE} ${args} ; then actual_size=`stat -f %z "${file}"`; if [ -n "" ] || [ -z "${CKSIZE}" ] || [ ${actual_size} -eq ${CKSIZE} ]; then continue 2; else echo "=> Fetched file size mismatch (expected ${CKSIZE}, actual ${actual_size})"; if [ ${sites_remaining} -gt 1 ]; then echo "=> Trying next site"; /bin/rm -f -f ${file}; fi; fi; fi; done; echo "=> Couldn't fetch it - please try to retrieve this"; echo "=> port manually into /portdistfiles/ and try again."; exit 1; fi; done ===> Fetching all distfiles required by libR-3.0.2_2 for building => SHA256 Checksum OK for R-3.0.2.tar.gz. => SHA256 Checksum OK for R-patched-20131112-r64207.diff.bz2. =========================================================================== =======================<phase: extract-depends>============================ =========================================================================== =======================<phase: extract >============================ ===> License GPLv2 accepted by the user cd /portdistfiles/; _PATCH_SITES_DEFAULT=" http://distcache.FreeBSD.org/local-distfiles/bf/ http://distcache.us-east.FreeBSD.org/local-distfiles/bf/ http://distcache.eu.FreeBSD.org/local-distfiles/bf/ http://distcache.us-west.FreeBSD.org/local-distfiles/bf/" ; for _file in R-patched-20131112-r64207.diff.bz2; do file=`echo $_file | /usr/bin/sed -E -e 's/:[^-:][^:]*$//'` ; select=`echo ${_file#${file}} | /usr/bin/sed -e 's/^://' -e 's/,/ /g'` ; file=`echo $file | /usr/bin/sed -E -e 's/:-[^:]+$//'` ; force_fetch=false; filebasename=${file##*/}; for afile in ; do afile=${afile##*/}; if [ "x$afile" = "x$filebasename" ]; then force_fetch=true; fi; done; if [ ! -f $file -a ! -f $filebasename -o "$force_fetch" = "true" ]; then if [ -L $file -o -L ${file##*/} ]; then echo "=> /portdistfiles//$file is a broken symlink."; echo "=> Perhaps a filesystem (most likely a CD) isn't mounted?"; echo "=> Please correct this problem and try again."; exit 1; fi; echo "=> $file doesn't seem to exist in /portdistfiles/."; if [ ! -z "$select" ] ; then __PATCH_SITES_TMP= ; for group in $select; do if [ ! -z \${_PATCH_SITES_${group}} ] ; then eval ___PATCH_SITES_TMP="\${_PATCH_SITES_${group}}" ; __PATCH_SITES_TMP="${__PATCH_SITES_TMP} ${___PATCH_SITES_TMP}" ; fi; done; ___PATCH_SITES_TMP= ; SORTED_PATCH_SITES_CMD_TMP="echo `echo ${__PATCH_SITES_TMP} | /usr/bin/awk 'BEGIN { RS = " "; ORS = " "; IGNORECASE = 1 ; gl = "://[^/]*/"; } /:\\/\\/[^\\/]*\\// { good["://[^/]*/"] = good["://[^/]*/"] " " $0 ; next; } { rest = rest " " $0; } END { n=split(gl, gla); for(i=1;i<=n;i++) { print good[gla[i]]; } print rest; }'` http://distcache.FreeBSD.org/ports-distfiles/" ; else SORTED_PATCH_SITES_CMD_TMP="cd /usr/ports/math/libR && make patch-sites-DEFAULT" ; fi; sites_remaining=0; sites="`eval $SORTED_PATCH_SITES_CMD_TMP`"; for site in ${sites}; do sites_remaining=$((${sites_remaining} + 1)); done; for site in ${sites}; do sites_remaining=$((${sites_remaining} - 1)); echo "=> Attempting to fetch ${site}$! {file}"; CKSIZE=`alg=SIZE; if [ \( -n "" -a -n "" \) -o ! -f "/usr/ports/math/libR/../R/distinfo" ]; then exit; fi; DIR=; /usr/bin/awk -v alg=$alg -v file=${DIR:+$DIR/}${file} '$1 == alg && $2 == "(" file ")" {print $4}' /usr/ports/math/libR/../R/distinfo`; case ${file} in */*) /bin/mkdir -p ${file%/*}; args="-o ${file} ${site}${file}";; *) args=${site}${file};; esac; if /usr/bin/env SSL_NO_VERIFY_PEER=1 SSL_NO_VERIFY_HOSTNAME=1 /usr/bin/fetch -Fpr ${CKSIZE:+-S $CKSIZE} ${args} ; then actual_size=`stat -f %z "${file}"`; if [ -n "" ] || [ -z "${CKSIZE}" ] || [ ${actual_size} -eq ${CKSIZE} ]; then continue 2; else echo "=> Fetched file size mismatch (expected ${CKSIZE}, actual ${actual_size})"; if [ ${sites_remaining} -gt 1 ]; then echo "=> Trying next site"; /bin/rm -f -f ${file}; fi; fi; fi; done; echo "=> Couldn't fetch it - please try to retrieve this"; echo "=> port manually into /portdistfiles/ and try again."; exit 1; fi; done ===> Fetching all distfiles required by libR-3.0.2_2 for building ===> Extracting for libR-3.0.2_2 => SHA256 Checksum OK for R-3.0.2.tar.gz. => SHA256 Checksum OK for R-patched-20131112-r64207.diff.bz2. =========================================================================== =======================<phase: patch-depends >============================ =========================================================================== =======================<phase: patch >============================ ===> Patching for libR-3.0.2_2 ===> Applying distribution patches for libR-3.0.2_2 ===> Applying FreeBSD patches for libR-3.0.2_2 =========================================================================== =======================<phase: build-depends >============================ ===> libR-3.0.2_2 depends on file: /usr/local/bin/gsed - not found ===> Verifying install for /usr/local/bin/gsed in /usr/ports/textproc/gsed ===> Installing existing package /packages/All/gsed-4.2.2.txz ===> Returning to build of libR-3.0.2_2 ===> libR-3.0.2_2 depends on executable: gfortran47 - not found ===> Verifying install for gfortran47 in /usr/ports/lang/gcc ===> Installing existing package /packages/All/gcc-4.7.4.txz Message for gcc-4.7.4: To ensure binaries built with this toolchain find appropriate versions of the necessary run-time libraries, you may want to link using -Wl,-rpath=/usr/local/lib/gcc47 For ports leveraging USE_GCC, USES=compiler, or USES=fortran this happens transparently. ===> Returning to build of libR-3.0.2_2 ===> libR-3.0.2_2 depends on executable: gcc47 - found ===> libR-3.0.2_2 depends on file: /usr/local/bin/as - found =========================================================================== =======================<phase: lib-depends >============================ ===> libR-3.0.2_2 depends on shared library: libicui18n.so - not found ===> Verifying for libicui18n.so in /usr/ports/devel/icu ===> Installing existing package /packages/All/icu-53.1.txz ===> Returning to build of libR-3.0.2_2 ===> libR-3.0.2_2 depends on shared library: libpcre.so - not found ===> Verifying for libpcre.so in /usr/ports/devel/pcre ===> Installing existing package /packages/All/pcre-8.34_2.txz ===> Returning to build of libR-3.0.2_2 ===> libR-3.0.2_2 depends on shared library: libintl.so - found (/usr/local/lib/libintl.so.9) =========================================================================== =======================<phase: configure >============================ ===> Configuring for libR-3.0.2_2 ===> FreeBSD 10 autotools fix applied to /wrkdirs/usr/ports/math/libR/work/R-3.0.2/m4/libtool.m4 ===> FreeBSD 10 autotools fix applied to /wrkdirs/usr/ports/math/libR/work/R-3.0.2/tools/config.rpath ===> FreeBSD 10 autotools fix applied to /wrkdirs/usr/ports/math/libR/work/R-3.0.2/configure configure: loading site script /usr/ports/Templates/config.site checking build system type... amd64-portbld-freebsd11.0 checking host system type... amd64-portbld-freebsd11.0 loading site script './config.site' loading build-specific script './config.site' checking for pwd... /bin/pwd checking whether builddir is srcdir... yes checking for working aclocal... missing checking for working autoconf... missing checking for working automake... missing checking for working autoheader... missing checking for gawk... (cached) /usr/bin/awk checking whether ln -s works... yes checking for bison... no checking for byacc... byacc checking for /usr/local/bin/ar... /usr/local/bin/ar checking for a BSD-compatible install... /usr/bin/install -c -o root -g wheel checking for sed... (cached) /usr/bin/sed checking for which... /usr/bin/which checking for less... /usr/bin/less checking for /usr/bin/tar... /usr/bin/tar checking for tex... no checking for pdftex... no configure: WARNING: you cannot build PDF versions of the R manuals checking for pdflatex... no configure: WARNING: you cannot build PDF versions of vignettes and help pages checking for makeindex... no checking for makeinfo... no configure: WARNING: you cannot build info or HTML versions of the R manuals checking for texi2dvi... no checking for kpsewhich... no checking for unzip... /usr/bin/unzip checking for zip... no checking for gzip... /usr/bin/gzip checking for bzip2... /usr/bin/bzip2 checking for firefox... no checking for mozilla... no checking for galeon... no checking for opera... no checking for xdg-open... no checking for kfmclient... no checking for gnome-moz-remote... no checking for open... no configure: WARNING: I could not determine a browser checking for acroread... no checking for acroread4... no checking for xdg-open... no checking for evince... no checking for xpdf... no checking for gv... no checking for gnome-gv... no checking for ggv... no checking for okular... no checking for kpdf... no checking for open... no checking for gpdf... no checking for kghostview... no configure: WARNING: I could not determine a PDF viewer checking for notangle... false checking for realpath... /bin/realpath checking for pkg-config... no checking for gcc... gcc47 checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc47 accepts -g... yes checking for gcc47 option to accept ISO C89... none needed checking how to run the C preprocessor... cpp47 checking for grep that handles long lines and -e... (cached) /usr/bin/grep checking for egrep... (cached) /usr/bin/egrep checking whether gcc47 needs -traditional... no checking how to run the C preprocessor... cpp47 defining F77 to be gfortran47 checking whether we are using the GNU Fortran 77 compiler... yes checking whether gfortran47 accepts -g... yes checking whether we are using the GNU C++ compiler... yes checking whether g++47 accepts -g... yes checking how to run the C++ preprocessor... g++47 -E checking whether __attribute__((visibility())) is supported... yes checking whether gcc47 accepts -fvisibility... yes checking whether gfortran47 accepts -fvisibility... yes checking for ANSI C header files... (cached) yes checking for sys/types.h... (cached) yes checking for sys/stat.h... (cached) yes checking for stdlib.h... (cached) yes checking for string.h... (cached) yes checking for memory.h... (cached) yes checking for strings.h... (cached) yes checking for inttypes.h... (cached) yes checking for stdint.h... (cached) yes checking for unistd.h... (cached) yes checking for minix/config.h... (cached) no checking whether it is safe to define __EXTENSIONS__... yes checking whether we are using the GNU Objective C compiler... yes checking whether gcc47 accepts -g... yes checking for Objective C++ compiler... trying some possibilities checking whether g++47 can compile ObjC++... no no working compiler found checking for a sed that does not truncate output... (cached) /usr/bin/sed checking for fgrep... (cached) /usr/bin/fgrep checking for ld used by gcc47... /usr/local/bin/ld checking if the linker (/usr/local/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/local/bin/nm checking the name lister (/usr/local/bin/nm) interface... BSD nm checking the maximum length of command line arguments... (cached) 262144 checking whether the shell understands some XSI constructs... yes checking whether the shell understands "+="... no checking for /usr/local/bin/ld option to reload object files... -r checking for objdump... /usr/local/bin/objdump checking how to recognize dependent libraries... pass_all checking for strip... strip checking for ranlib... /usr/local/bin/ranlib checking command to parse /usr/local/bin/nm output from gcc47 object... ok checking for dlfcn.h... (cached) yes checking whether we are using the GNU C++ compiler... (cached) yes checking whether g++47 accepts -g... (cached) yes checking how to run the C++ preprocessor... g++47 -E checking whether we are using the GNU Fortran 77 compiler... (cached) yes checking whether gfortran47 accepts -g... (cached) yes checking for objdir... .libs checking if gcc47 supports -fno-rtti -fno-exceptions... no checking for gcc47 option to produce PIC... -fPIC -DPIC checking if gcc47 PIC flag -fPIC -DPIC works... yes checking if gcc47 static flag -static works... yes checking if gcc47 supports -c -o file.o... yes checking if gcc47 supports -c -o file.o... (cached) yes checking whether the gcc47 linker (/usr/local/bin/ld) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... freebsd11.0 ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... no checking for ld used by g++47... /usr/local/bin/ld checking if the linker (/usr/local/bin/ld) is GNU ld... yes checking whether the g++47 linker (/usr/local/bin/ld) supports shared libraries... yes checking for g++47 option to produce PIC... -fPIC -DPIC checking if g++47 PIC flag -fPIC -DPIC works... yes checking if g++47 static flag -static works... yes checking if g++47 supports -c -o file.o... yes checking if g++47 supports -c -o file.o... (cached) yes checking whether the g++47 linker (/usr/local/bin/ld) supports shared libraries... yes checking dynamic linker characteristics... freebsd11.0 ld.so checking how to hardcode library paths into programs... immediate checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... no checking for gfortran47 option to produce PIC... -fPIC checking if gfortran47 PIC flag -fPIC works... yes checking if gfortran47 static flag -static works... yes checking if gfortran47 supports -c -o file.o... yes checking if gfortran47 supports -c -o file.o... (cached) yes checking whether the gfortran47 linker (/usr/local/bin/ld) supports shared libraries... yes checking dynamic linker characteristics... freebsd11.0 ld.so checking how to hardcode library paths into programs... immediate checking for cos in -lquadmath -lm... yes checking for sin in -lquadmath -lm... yes checking for dlopen in -ldl... no checking readline/history.h usability... no checking readline/history.h presence... no checking for readline/history.h... no checking readline/readline.h usability... no checking readline/readline.h presence... no checking for readline/readline.h... no checking for rl_callback_read_char in -lreadline... no checking for main in -lncurses... yes checking for rl_callback_read_char in -lreadline... no checking for history_truncate_file... no configure: error: --with-readline=yes (default) and headers/libs are not available ===> Script "configure" failed unexpectedly. Please report the problem to bf@FreeBSD.org [maintainer] and attach the "/wrkdirs/usr/ports/math/libR/work/R-3.0.2/config.log" including the output of the failure of your make command. Also, it might be a good idea to provide an overview of all packages installed on your system (e.g. a /usr/local/sbin/pkg-static info -g -Ea). *** Error code 1 Stop. make: stopped in /usr/ports/math/libR
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