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Date:      Sun, 24 Jan 2021 10:07:14 +0000
From:      bugzilla-noreply@freebsd.org
To:        ports-bugs@FreeBSD.org
Subject:   [Bug 252965] biology/kallisto: failure with HDF5 1.12
Message-ID:  <bug-252965-7788@https.bugs.freebsd.org/bugzilla/>

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https://bugs.freebsd.org/bugzilla/show_bug.cgi?id=3D252965

            Bug ID: 252965
           Summary: biology/kallisto: failure with HDF5 1.12
           Product: Ports & Packages
           Version: Latest
          Hardware: Any
                OS: Any
            Status: New
          Severity: Affects Only Me
          Priority: ---
         Component: Individual Port(s)
          Assignee: jwb@freebsd.org
          Reporter: thierry@FreeBSD.org
          Assignee: jwb@freebsd.org
             Flags: maintainer-feedback?(jwb@freebsd.org)

science/hdf5 should be upgraded to 1.12, but some ports are not compatible =
with
this version, and it has been suggested to repocopy the actual port to
science/hdf5-110.

PR 251894 propose a patch to do that, and an exp-run has been launched to
detect the incompatibilities.

Unfortunately, your port biology/kallisto failed: see
http://package18.nyi.freebsd.org/data/121amd64-default-foo/2021-01-20_21h30=
m48s/logs/errors/kallisto-0.46.1,1.log
(this looks like a missing -lz?)

Could you please propose a patch, either to fix it with 1.12 or to switch to
hdf5-110?

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