Date: Sat, 4 Nov 2023 13:15:27 GMT From: "Jason W. Bacon" <jwb@FreeBSD.org> To: ports-committers@FreeBSD.org, dev-commits-ports-all@FreeBSD.org, dev-commits-ports-main@FreeBSD.org Subject: git: 8a2deaeb09da - main - biology/kallisto: Update to 0.50.1,1 Message-ID: <202311041315.3A4DFRfw002480@gitrepo.freebsd.org>
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The branch main has been updated by jwb: URL: https://cgit.FreeBSD.org/ports/commit/?id=8a2deaeb09da2b11c7061bd7120c9078717157ee commit 8a2deaeb09da2b11c7061bd7120c9078717157ee Author: Jason W. Bacon <jwb@FreeBSD.org> AuthorDate: 2023-11-04 13:12:42 +0000 Commit: Jason W. Bacon <jwb@FreeBSD.org> CommitDate: 2023-11-04 13:15:25 +0000 biology/kallisto: Update to 0.50.1,1 Update kallisto index version to 13 A few other new features Changes: https://github.com/pachterlab/kallisto/releases Reported by: portscout --- biology/kallisto/Makefile | 3 +-- biology/kallisto/distinfo | 6 +++--- biology/kallisto/files/patch-src_main.cpp | 10 ++++++++++ 3 files changed, 14 insertions(+), 5 deletions(-) diff --git a/biology/kallisto/Makefile b/biology/kallisto/Makefile index 4ae2b8bd94ec..8774208d9097 100644 --- a/biology/kallisto/Makefile +++ b/biology/kallisto/Makefile @@ -1,7 +1,6 @@ PORTNAME= kallisto DISTVERSIONPREFIX= v -DISTVERSION= 0.50.0 -PORTREVISION= 2 +DISTVERSION= 0.50.1 PORTEPOCH= 1 CATEGORIES= biology diff --git a/biology/kallisto/distinfo b/biology/kallisto/distinfo index e216bb4ae394..f01c0d8e6e1c 100644 --- a/biology/kallisto/distinfo +++ b/biology/kallisto/distinfo @@ -1,3 +1,3 @@ -TIMESTAMP = 1688395958 -SHA256 (pachterlab-kallisto-v0.50.0_GH0.tar.gz) = f9cc0058d08206cb6dde4a4dcaf8a778df5a939a6e021508eea9b00b0d6d5368 -SIZE (pachterlab-kallisto-v0.50.0_GH0.tar.gz) = 5939018 +TIMESTAMP = 1698923323 +SHA256 (pachterlab-kallisto-v0.50.1_GH0.tar.gz) = 030752bab3b0e33cd3f23f6d8feddd74194e5513532ffbf23519e84db2a86d34 +SIZE (pachterlab-kallisto-v0.50.1_GH0.tar.gz) = 5947303 diff --git a/biology/kallisto/files/patch-src_main.cpp b/biology/kallisto/files/patch-src_main.cpp new file mode 100644 index 000000000000..2eadc428781c --- /dev/null +++ b/biology/kallisto/files/patch-src_main.cpp @@ -0,0 +1,10 @@ +--- src/main.cpp.orig 2023-11-02 11:38:09 UTC ++++ src/main.cpp +@@ -11,6 +11,7 @@ + #include <limits> + + #include <cstdio> ++#include <unistd.h> // rmdir() + + #include "common.h" + #include "ProcessReads.h"
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